Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:15361439-15711877

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dll1 17 15367354 to 15376048 8694 - protein coding gene delta like canonical Notch ligand 1
Tssr146510 17 15368580 to 15368591 11 - TSS region transcription start site region 146510
Cpgi8629 17 15374527 to 15377243 2716 CpG island CpG island 8629
Tssr142751 17 15374626 to 15374637 11 + TSS region transcription start site region 142751
Tssr146511 17 15374863 to 15374879 16 - TSS region transcription start site region 146511
A930024N18Rik 17 15375000 to 15379475 4475 + lincRNA gene RIKEN cDNA A930024N18 gene
Tssr146512 17 15375218 to 15375264 46 - TSS region transcription start site region 146512
Tssr146513 17 15375969 to 15375983 14 - TSS region transcription start site region 146513
Cpgi8630 17 15380437 to 15381338 901 CpG island CpG island 8630
Cpgi8631 17 15395852 to 15396577 725 CpG island CpG island 8631
Fam120b 17 15396202 to 15433581 37379 + protein coding gene family with sequence similarity 120, member B
Tssr142752 17 15396240 to 15396317 77 + TSS region transcription start site region 142752
A430055H19Rik 17 15399655 to 15401442 1787 unclassified gene RIKEN cDNA A430055H19 gene
Gm49668 17 15421802 to 15434965 13163 - lincRNA gene predicted gene, 49668
Tssr146514 17 15432209 to 15432220 11 - TSS region transcription start site region 146514
Tssr146515 17 15433312 to 15433322 10 - TSS region transcription start site region 146515
Tssr146516 17 15433329 to 15433337 8 - TSS region transcription start site region 146516
Tssr146517 17 15434819 to 15434850 31 - TSS region transcription start site region 146517
Tssr146518 17 15434851 to 15434867 16 - TSS region transcription start site region 146518
Gm49669 17 15459805 to 15460160 355 + pseudogene predicted gene, 49669
Psmb1 17 15475721 to 15498276 22555 - protein coding gene proteasome (prosome, macropain) subunit, beta type 1
Tssr146519 17 15476162 to 15476196 34 - TSS region transcription start site region 146519
Cpgi8632 17 15497850 to 15498560 710 CpG island CpG island 8632
Tssr146520 17 15498263 to 15498274 11 - TSS region transcription start site region 146520
Tssr146521 17 15498282 to 15498304 22 - TSS region transcription start site region 146521
Cpgi8633 17 15499690 to 15500505 815 CpG island CpG island 8633
Tbp 17 15499888 to 15517427 17539 + protein coding gene TATA box binding protein
Tssr146522 17 15499894 to 15499909 15 - TSS region transcription start site region 146522
Tssr142753 17 15499908 to 15499959 51 + TSS region transcription start site region 142753
Tssr142754 17 15499961 to 15499976 15 + TSS region transcription start site region 142754
Tssr142755 17 15500144 to 15500183 39 + TSS region transcription start site region 142755
Pdcd2 17 15521575 to 15527301 5726 - protein coding gene programmed cell death 2
Cpgi8634 17 15526801 to 15527506 705 CpG island CpG island 8634
Tssr146523 17 15527267 to 15527278 11 - TSS region transcription start site region 146523
Tssr146524 17 15527281 to 15527315 34 - TSS region transcription start site region 146524
Tssr146525 17 15527317 to 15527329 12 - TSS region transcription start site region 146525
Gm7177 17 15535025 to 15536480 1455 - pseudogene predicted gene 7177
Cpgi8635 17 15536439 to 15536877 438 CpG island CpG island 8635
Prdm9 17 15543079 to 15564354 21275 - protein coding gene PR domain containing 9
Gm18564 17 15547845 to 15550394 2549 + pseudogene predicted gene, 18564
Cpgi8636 17 15563788 to 15564632 844 CpG island CpG island 8636
Tssr146526 17 15564299 to 15564313 14 - TSS region transcription start site region 146526
Tssr146527 17 15564322 to 15564359 37 - TSS region transcription start site region 146527
Gm6686 17 15566164 to 15566421 257 - pseudogene predicted pseudogene 6686
Gm7450 17 15575999 to 15577151 1152 - pseudogene predicted gene 7450
Cpgi8637 17 15577356 to 15577608 252 CpG island CpG island 8637
Tssr5017 17 15577493 to 15577497 4 - TSS region transcription start site region 5017
Tssr142756 17 15597895 to 15597911 16 + TSS region transcription start site region 142756
Gm3507 17 15597928 to 15598445 517 + pseudogene predicted gene 3507
4933401D09Rik 17 15631788 to 15641102 9314 + lincRNA gene RIKEN cDNA 4933401D09 gene
D17Jcs22 17 15683013 to 15683226 213 DNA segment DNA segment, Chr 17, John C. Schimenti 22
5830433I10Rik 17 15702465 to 15704708 2243 - lncRNA gene RIKEN cDNA 5830433I10 gene
Cpgi8638 17 15704260 to 15706179 1919 CpG island CpG island 8638
Tssr146528 17 15704422 to 15704431 9 - TSS region transcription start site region 146528
Tssr146529 17 15704792 to 15704810 18 - TSS region transcription start site region 146529
Tssr142757 17 15704963 to 15704994 31 + TSS region transcription start site region 142757
Chd1 17 15704967 to 15772610 67643 + protein coding gene chromodomain helicase DNA binding protein 1
Tssr142758 17 15705002 to 15705033 31 + TSS region transcription start site region 142758
Tssr142759 17 15705097 to 15705142 45 + TSS region transcription start site region 142759
Tssr146530 17 15706112 to 15706133 21 - TSS region transcription start site region 146530
Tssr146531 17 15706144 to 15706163 19 - TSS region transcription start site region 146531
Tssr142760 17 15706551 to 15706561 10 + TSS region transcription start site region 142760
Tssr142761 17 15706577 to 15706586 9 + TSS region transcription start site region 142761