Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:14345500-15014235

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smoc2 17 14279506 to 14404790 125284 + protein coding gene SPARC related modular calcium binding 2
D17Jcs33 17 14381888 to 14382135 247 DNA segment DNA segment, Chr 17, John C. Schimenti 33
4930474M22Rik 17 14389113 to 14398942 9829 - antisense lncRNA gene RIKEN cDNA 4930474M22 gene
Tssr146495 17 14398931 to 14398941 10 - TSS region transcription start site region 146495
Tssr5014 17 14398944 to 14398952 8 - TSS region transcription start site region 5014
Tssr142738 17 14399027 to 14399036 9 + TSS region transcription start site region 142738
Tssr142739 17 14399235 to 14399246 11 + TSS region transcription start site region 142739
Tssr142740 17 14399260 to 14399272 12 + TSS region transcription start site region 142740
Gm49720 17 14413490 to 14413946 456 + pseudogene predicted gene, 49720
Gm38551 17 14449882 to 14488180 38298 + lincRNA gene predicted gene, 38551
Gm34916 17 14503452 to 14522426 18974 - lncRNA gene predicted gene, 34916
Tssr142741 17 14512854 to 14512856 2 + TSS region transcription start site region 142741
D17Jcs32 17 14513737 to 14513939 202 DNA segment DNA segment, Chr 17, John C. Schimenti 32
Tssr142742 17 14546341 to 14546361 20 + TSS region transcription start site region 142742
D17Jcs31 17 14589645 to 14589922 277 DNA segment DNA segment, Chr 17, John C. Schimenti 31
Tssr142743 17 14595887 to 14595892 5 + TSS region transcription start site region 142743
Thbs2 17 14665500 to 14694235 28735 - protein coding gene thrombospondin 2
Tssr146496 17 14665626 to 14665630 4 - TSS region transcription start site region 146496
Tssr146497 17 14676235 to 14676239 4 - TSS region transcription start site region 146497
Tssr142744 17 14676984 to 14676992 8 + TSS region transcription start site region 142744
Tssr146498 17 14680006 to 14680015 9 - TSS region transcription start site region 146498
Tssr146499 17 14690147 to 14690162 15 - TSS region transcription start site region 146499
Tssr146500 17 14694082 to 14694099 17 - TSS region transcription start site region 146500
Tssr146501 17 14694223 to 14694242 19 - TSS region transcription start site region 146501
Gm3222 17 14709066 to 14710055 989 + pseudogene predicted pseudogene 3222
Gm23352 17 14791941 to 14792004 63 - snRNA gene predicted gene, 23352
Wdr27 17 14818519 to 14943158 124639 - protein coding gene WD repeat domain 27
Tssr146502 17 14909504 to 14909524 20 - TSS region transcription start site region 146502
1190001L17Rik 17 14939309 to 14943076 3767 unclassified gene RIKEN cDNA 1190001L17 gene
Gm7393 17 14941965 to 14942703 738 + pseudogene predicted gene 7393
Cpgi8627 17 14942855 to 14943969 1114 CpG island CpG island 8627
Tssr146503 17 14943038 to 14943055 17 - TSS region transcription start site region 146503
Tssr5015 17 14943059 to 14943086 27 - TSS region transcription start site region 5015
Tssr146504 17 14943100 to 14943111 11 - TSS region transcription start site region 146504
Tssr146505 17 14943114 to 14943151 37 - TSS region transcription start site region 146505
1600012H06Rik 17 14943184 to 14945939 2755 + protein coding gene RIKEN cDNA 1600012H06 gene
Tssr142745 17 14943189 to 14943201 12 + TSS region transcription start site region 142745
Tssr142746 17 14943204 to 14943281 77 + TSS region transcription start site region 142746
Phf10 17 14945009 to 14961273 16264 - protein coding gene PHD finger protein 10
Tssr142747 17 14945145 to 14945164 19 + TSS region transcription start site region 142747
Tssr142748 17 14945298 to 14945325 27 + TSS region transcription start site region 142748
Tssr142749 17 14945518 to 14945550 32 + TSS region transcription start site region 142749
Cpgi8628 17 14960600 to 14961186 586 CpG island CpG island 8628
Tssr5016 17 14961229 to 14961304 75 - TSS region transcription start site region 5016
Gm3417 17 14964242 to 14978790 14548 - protein coding gene predicted gene 3417
9030025P20Rik 17 14978806 to 14991577 12771 + protein coding gene RIKEN cDNA 9030025P20 gene
Gm3255 17 14987880 to 14990704 2824 - unclassified gene predicted gene 3255
Gm3448 17 14995783 to 15010184 14401 - protein coding gene predicted gene 3448
Gm3435 17 15010176 to 15022449 12273 + protein coding gene predicted gene 3435