Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:13878519-15883158

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Afdn 17 13760541 to 13905798 145257 + protein coding gene afadin, adherens junction formation factor
Tssr146490 17 13899204 to 13899211 7 - TSS region transcription start site region 146490
Gm49121 17 13911248 to 13936778 25530 + pseudogene predicted gene, 49121
Gm7168 17 13948373 to 13950678 2305 + protein coding gene predicted gene 7168
Gm33889 17 13991607 to 13998962 7355 - lncRNA gene predicted gene, 33889
Gm7356 17 14000224 to 14003393 3169 - protein coding gene predicted gene 7356
Gm34107 17 14050060 to 14057117 7057 - lncRNA gene predicted gene, 34107
Gm7358 17 14057225 to 14059531 2306 - protein coding gene predicted gene 7358
4930488N24Rik 17 14104924 to 14106450 1526 - pseudogene RIKEN cDNA 4930488N24 gene
Gm49903 17 14125868 to 14126297 429 - pseudogene predicted gene, 49903
D17Jcs122 17 14129978 to 14130192 214 DNA segment DNA segment, Chr 17, John C. Schimenti 122
Gm34426 17 14169641 to 14170941 1300 + lncRNA gene predicted gene, 34426
Tssr142727 17 14169692 to 14169703 11 + TSS region transcription start site region 142727
Tssr142728 17 14169707 to 14169733 26 + TSS region transcription start site region 142728
Dact2 17 14195230 to 14204337 9107 - protein coding gene dishevelled-binding antagonist of beta-catenin 2
Tssr5013 17 14202525 to 14202529 4 + TSS region transcription start site region 5013
Cpgi8625 17 14202989 to 14204299 1310 CpG island CpG island 8625
Tssr146491 17 14203695 to 14203779 84 - TSS region transcription start site region 146491
Gm34510 17 14203719 to 14212602 8883 + antisense lncRNA gene predicted gene, 34510
Tssr142729 17 14203720 to 14203765 45 + TSS region transcription start site region 142729
Tssr146492 17 14204234 to 14204251 17 - TSS region transcription start site region 146492
Tssr146493 17 14204257 to 14204281 24 - TSS region transcription start site region 146493
Gm41531 17 14226084 to 14239480 13396 + lncRNA gene predicted gene, 41531
Tssr142730 17 14226551 to 14226569 18 + TSS region transcription start site region 142730
D17Jcs35 17 14229341 to 14229597 256 DNA segment DNA segment, Chr 17, John C. Schimenti 35
Gm34772 17 14246418 to 14253614 7196 - lncRNA gene predicted gene, 34772
Tssr142731 17 14249732 to 14249741 9 + TSS region transcription start site region 142731
Tssr142732 17 14249809 to 14249830 21 + TSS region transcription start site region 142732
Tssr142733 17 14249833 to 14249856 23 + TSS region transcription start site region 142733
Gm34567 17 14249851 to 14277755 27904 + lincRNA gene predicted gene, 34567
Tssr142734 17 14249884 to 14249897 13 + TSS region transcription start site region 142734
Tssr146494 17 14252702 to 14252711 9 - TSS region transcription start site region 146494
Tssr142735 17 14261053 to 14261054 1 + TSS region transcription start site region 142735
Cpgi8626 17 14278967 to 14280871 1904 CpG island CpG island 8626
Tssr142736 17 14279506 to 14279513 7 + TSS region transcription start site region 142736
Smoc2 17 14279506 to 14404790 125284 + protein coding gene SPARC related modular calcium binding 2
Tssr142737 17 14279531 to 14279550 19 + TSS region transcription start site region 142737
D17Jcs34 17 14332737 to 14333003 266 DNA segment DNA segment, Chr 17, John C. Schimenti 34
D17Jcs33 17 14381888 to 14382135 247 DNA segment DNA segment, Chr 17, John C. Schimenti 33
4930474M22Rik 17 14389113 to 14398942 9829 - antisense lncRNA gene RIKEN cDNA 4930474M22 gene
Tssr146495 17 14398931 to 14398941 10 - TSS region transcription start site region 146495
Tssr5014 17 14398944 to 14398952 8 - TSS region transcription start site region 5014
Tssr142738 17 14399027 to 14399036 9 + TSS region transcription start site region 142738
Tssr142739 17 14399235 to 14399246 11 + TSS region transcription start site region 142739
Tssr142740 17 14399260 to 14399272 12 + TSS region transcription start site region 142740
Gm49720 17 14413490 to 14413946 456 + pseudogene predicted gene, 49720
Gm38551 17 14449882 to 14488180 38298 + lincRNA gene predicted gene, 38551
Gm34916 17 14503452 to 14522426 18974 - lncRNA gene predicted gene, 34916
Tssr142741 17 14512854 to 14512856 2 + TSS region transcription start site region 142741
D17Jcs32 17 14513737 to 14513939 202 DNA segment DNA segment, Chr 17, John C. Schimenti 32
Tssr142742 17 14546341 to 14546361 20 + TSS region transcription start site region 142742
D17Jcs31 17 14589645 to 14589922 277 DNA segment DNA segment, Chr 17, John C. Schimenti 31
Tssr142743 17 14595887 to 14595892 5 + TSS region transcription start site region 142743
Thbs2 17 14665500 to 14694235 28735 - protein coding gene thrombospondin 2
Tssr146496 17 14665626 to 14665630 4 - TSS region transcription start site region 146496
Tssr146497 17 14676235 to 14676239 4 - TSS region transcription start site region 146497
Tssr142744 17 14676984 to 14676992 8 + TSS region transcription start site region 142744
Tssr146498 17 14680006 to 14680015 9 - TSS region transcription start site region 146498
Tssr146499 17 14690147 to 14690162 15 - TSS region transcription start site region 146499
Tssr146500 17 14694082 to 14694099 17 - TSS region transcription start site region 146500
Tssr146501 17 14694223 to 14694242 19 - TSS region transcription start site region 146501
Gm3222 17 14709066 to 14710055 989 + pseudogene predicted pseudogene 3222
Gm23352 17 14791941 to 14792004 63 - snRNA gene predicted gene, 23352
Wdr27 17 14818519 to 14943158 124639 - protein coding gene WD repeat domain 27
Tssr146502 17 14909504 to 14909524 20 - TSS region transcription start site region 146502
1190001L17Rik 17 14939309 to 14943076 3767 unclassified gene RIKEN cDNA 1190001L17 gene
Gm7393 17 14941965 to 14942703 738 + pseudogene predicted gene 7393
Cpgi8627 17 14942855 to 14943969 1114 CpG island CpG island 8627
Tssr146503 17 14943038 to 14943055 17 - TSS region transcription start site region 146503
Tssr5015 17 14943059 to 14943086 27 - TSS region transcription start site region 5015
Tssr146504 17 14943100 to 14943111 11 - TSS region transcription start site region 146504
Tssr146505 17 14943114 to 14943151 37 - TSS region transcription start site region 146505
1600012H06Rik 17 14943184 to 14945939 2755 + protein coding gene RIKEN cDNA 1600012H06 gene
Tssr142745 17 14943189 to 14943201 12 + TSS region transcription start site region 142745
Tssr142746 17 14943204 to 14943281 77 + TSS region transcription start site region 142746
Phf10 17 14945009 to 14961273 16264 - protein coding gene PHD finger protein 10
Tssr142747 17 14945145 to 14945164 19 + TSS region transcription start site region 142747
Tssr142748 17 14945298 to 14945325 27 + TSS region transcription start site region 142748
Tssr142749 17 14945518 to 14945550 32 + TSS region transcription start site region 142749
Cpgi8628 17 14960600 to 14961186 586 CpG island CpG island 8628
Tssr5016 17 14961229 to 14961304 75 - TSS region transcription start site region 5016
Gm3417 17 14964242 to 14978790 14548 - protein coding gene predicted gene 3417
9030025P20Rik 17 14978806 to 14991577 12771 + protein coding gene RIKEN cDNA 9030025P20 gene
Gm3255 17 14987880 to 14990704 2824 - unclassified gene predicted gene 3255
Gm3448 17 14995783 to 15010184 14401 - protein coding gene predicted gene 3448
Gm3435 17 15010176 to 15022449 12273 + protein coding gene predicted gene 3435
Tcte3 17 15027152 to 15041488 14336 - protein coding gene t-complex-associated testis expressed 3
Tssr146506 17 15041457 to 15041469 12 - TSS region transcription start site region 146506
Ermard 17 15041549 to 15090045 48496 + protein coding gene ER membrane associated RNA degradation
Gm35343 17 15046761 to 15055107 8346 - lncRNA gene predicted gene, 35343
D17Mit78 17 15061815 to 15061912 97 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 78
Gm41532 17 15080746 to 15086138 5392 + lncRNA gene predicted gene, 41532
Gm35203 17 15084317 to 15086185 1868 - lncRNA gene predicted gene, 35203
D17Jcs27 17 15143789 to 15144000 211 DNA segment DNA segment, Chr 17, John C. Schimenti 27
Gm35455 17 15152122 to 15172191 20069 + lincRNA gene predicted gene, 35455
Gm35502 17 15195082 to 15206274 11192 + lncRNA gene predicted gene, 35502
4930432N10Rik 17 15207601 to 15209388 1787 unclassified gene RIKEN cDNA 4930432N10 gene
Gm5091 17 15231585 to 15240783 9198 - lincRNA gene predicted gene 5091
Tssr146507 17 15239301 to 15239317 16 - TSS region transcription start site region 146507
Tssr146508 17 15240747 to 15240755 8 - TSS region transcription start site region 146508
Gm35576 17 15282286 to 15285416 3130 - lincRNA gene predicted gene, 35576
D17Aus17 17 15283650 to 15283904 254 DNA segment DNA segment, Chr 17, Austin 17
Gm7423 17 15321432 to 15321882 450 - pseudogene predicted gene 7423
Tssr142750 17 15327147 to 15327148 1 + TSS region transcription start site region 142750
Tssr146509 17 15329924 to 15329934 10 - TSS region transcription start site region 146509
Gm10510 17 15350813 to 15354461 3648 - lncRNA gene predicted gene 10510
Dll1 17 15367354 to 15376048 8694 - protein coding gene delta like canonical Notch ligand 1
Tssr146510 17 15368580 to 15368591 11 - TSS region transcription start site region 146510
Cpgi8629 17 15374527 to 15377243 2716 CpG island CpG island 8629
Tssr142751 17 15374626 to 15374637 11 + TSS region transcription start site region 142751
Tssr146511 17 15374863 to 15374879 16 - TSS region transcription start site region 146511
A930024N18Rik 17 15375000 to 15379475 4475 + lincRNA gene RIKEN cDNA A930024N18 gene
Tssr146512 17 15375218 to 15375264 46 - TSS region transcription start site region 146512
Tssr146513 17 15375969 to 15375983 14 - TSS region transcription start site region 146513
Cpgi8630 17 15380437 to 15381338 901 CpG island CpG island 8630
Cpgi8631 17 15395852 to 15396577 725 CpG island CpG island 8631
Fam120b 17 15396202 to 15433581 37379 + protein coding gene family with sequence similarity 120, member B
Tssr142752 17 15396240 to 15396317 77 + TSS region transcription start site region 142752
A430055H19Rik 17 15399655 to 15401442 1787 unclassified gene RIKEN cDNA A430055H19 gene
Gm49668 17 15421802 to 15434965 13163 - lincRNA gene predicted gene, 49668
Tssr146514 17 15432209 to 15432220 11 - TSS region transcription start site region 146514
Tssr146515 17 15433312 to 15433322 10 - TSS region transcription start site region 146515
Tssr146516 17 15433329 to 15433337 8 - TSS region transcription start site region 146516
Tssr146517 17 15434819 to 15434850 31 - TSS region transcription start site region 146517
Tssr146518 17 15434851 to 15434867 16 - TSS region transcription start site region 146518
Gm49669 17 15459805 to 15460160 355 + pseudogene predicted gene, 49669
Psmb1 17 15475721 to 15498276 22555 - protein coding gene proteasome (prosome, macropain) subunit, beta type 1
Tssr146519 17 15476162 to 15476196 34 - TSS region transcription start site region 146519
Cpgi8632 17 15497850 to 15498560 710 CpG island CpG island 8632
Tssr146520 17 15498263 to 15498274 11 - TSS region transcription start site region 146520
Tssr146521 17 15498282 to 15498304 22 - TSS region transcription start site region 146521
Cpgi8633 17 15499690 to 15500505 815 CpG island CpG island 8633
Tbp 17 15499888 to 15517427 17539 + protein coding gene TATA box binding protein
Tssr146522 17 15499894 to 15499909 15 - TSS region transcription start site region 146522
Tssr142753 17 15499908 to 15499959 51 + TSS region transcription start site region 142753
Tssr142754 17 15499961 to 15499976 15 + TSS region transcription start site region 142754
Tssr142755 17 15500144 to 15500183 39 + TSS region transcription start site region 142755
Pdcd2 17 15521575 to 15527301 5726 - protein coding gene programmed cell death 2
Cpgi8634 17 15526801 to 15527506 705 CpG island CpG island 8634
Tssr146523 17 15527267 to 15527278 11 - TSS region transcription start site region 146523
Tssr146524 17 15527281 to 15527315 34 - TSS region transcription start site region 146524
Tssr146525 17 15527317 to 15527329 12 - TSS region transcription start site region 146525
Gm7177 17 15535025 to 15536480 1455 - pseudogene predicted gene 7177
Cpgi8635 17 15536439 to 15536877 438 CpG island CpG island 8635
Prdm9 17 15543079 to 15564354 21275 - protein coding gene PR domain containing 9
Gm18564 17 15547845 to 15550394 2549 + pseudogene predicted gene, 18564
Cpgi8636 17 15563788 to 15564632 844 CpG island CpG island 8636
Tssr146526 17 15564299 to 15564313 14 - TSS region transcription start site region 146526
Tssr146527 17 15564322 to 15564359 37 - TSS region transcription start site region 146527
Gm6686 17 15566164 to 15566421 257 - pseudogene predicted pseudogene 6686
Gm7450 17 15575999 to 15577151 1152 - pseudogene predicted gene 7450
Cpgi8637 17 15577356 to 15577608 252 CpG island CpG island 8637
Tssr5017 17 15577493 to 15577497 4 - TSS region transcription start site region 5017
Tssr142756 17 15597895 to 15597911 16 + TSS region transcription start site region 142756
Gm3507 17 15597928 to 15598445 517 + pseudogene predicted gene 3507
4933401D09Rik 17 15631788 to 15641102 9314 + lincRNA gene RIKEN cDNA 4933401D09 gene
D17Jcs22 17 15683013 to 15683226 213 DNA segment DNA segment, Chr 17, John C. Schimenti 22
5830433I10Rik 17 15702465 to 15704708 2243 - lncRNA gene RIKEN cDNA 5830433I10 gene
Cpgi8638 17 15704260 to 15706179 1919 CpG island CpG island 8638
Tssr146528 17 15704422 to 15704431 9 - TSS region transcription start site region 146528
Tssr146529 17 15704792 to 15704810 18 - TSS region transcription start site region 146529
Tssr142757 17 15704963 to 15704994 31 + TSS region transcription start site region 142757
Chd1 17 15704967 to 15772610 67643 + protein coding gene chromodomain helicase DNA binding protein 1
Tssr142758 17 15705002 to 15705033 31 + TSS region transcription start site region 142758
Tssr142759 17 15705097 to 15705142 45 + TSS region transcription start site region 142759
Tssr146530 17 15706112 to 15706133 21 - TSS region transcription start site region 146530
Tssr146531 17 15706144 to 15706163 19 - TSS region transcription start site region 146531
Tssr142760 17 15706551 to 15706561 10 + TSS region transcription start site region 142760
Tssr142761 17 15706577 to 15706586 9 + TSS region transcription start site region 142761
Tssr142762 17 15731839 to 15731855 16 + TSS region transcription start site region 142762
Tssr142763 17 15731970 to 15731983 13 + TSS region transcription start site region 142763
Tssr142764 17 15735758 to 15735807 49 + TSS region transcription start site region 142764
Tssr142765 17 15745782 to 15745787 5 + TSS region transcription start site region 142765
Tssr142766 17 15747798 to 15747813 15 + TSS region transcription start site region 142766
Tssr142767 17 15751314 to 15751318 4 + TSS region transcription start site region 142767
Tssr142768 17 15755019 to 15755058 39 + TSS region transcription start site region 142768
D17Jcs21 17 15756389 to 15756581 192 DNA segment DNA segment, Chr 17, John C. Schimenti 21
Tssr142769 17 15758574 to 15758585 11 + TSS region transcription start site region 142769
Tssr142770 17 15758626 to 15758638 12 + TSS region transcription start site region 142770
Tssr142771 17 15772289 to 15772293 4 + TSS region transcription start site region 142771
Tssr142772 17 15777568 to 15777571 3 + TSS region transcription start site region 142772
Rgmb 17 15804661 to 15831817 27156 - protein coding gene repulsive guidance molecule family member B
Tssr146532 17 15807080 to 15807094 14 - TSS region transcription start site region 146532
Cpgi8639 17 15825425 to 15827284 1859 CpG island CpG island 8639
Tssr146533 17 15826488 to 15826512 24 - TSS region transcription start site region 146533
Tssr146534 17 15826521 to 15826590 69 - TSS region transcription start site region 146534
Tssr146535 17 15829825 to 15829839 14 - TSS region transcription start site region 146535
Tssr146536 17 15829882 to 15829902 20 - TSS region transcription start site region 146536
Cpgi8640 17 15830361 to 15831424 1063 CpG island CpG island 8640
Tssr146537 17 15830786 to 15830797 11 - TSS region transcription start site region 146537
Tssr146538 17 15830804 to 15830816 12 - TSS region transcription start site region 146538
Tssr146539 17 15830830 to 15830849 19 - TSS region transcription start site region 146539
Tssr146540 17 15831032 to 15831102 70 - TSS region transcription start site region 146540
Tssr146541 17 15831172 to 15831195 23 - TSS region transcription start site region 146541
Tssr146542 17 15831228 to 15831251 23 - TSS region transcription start site region 146542
Gm3292 17 15833168 to 15833477 309 - pseudogene predicted gene 3292
Gm25598 17 15837549 to 15837655 106 - snRNA gene predicted gene, 25598
Eif3s6-ps3 17 15845280 to 15846628 1348 + pseudogene eukaryotic translation initiation factor 3, subunit 6, pseudogene 3
D17Mit261 17 15858247 to 15858421 174 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 261
Gm41533 17 15877081 to 15907917 30836 - lncRNA gene predicted gene, 41533