Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:13842989-14564299

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Afdn 17 13760541 to 13905798 145257 + protein coding gene afadin, adherens junction formation factor
Tssr142714 17 13846088 to 13846093 5 + TSS region transcription start site region 142714
Tssr142715 17 13846095 to 13846119 24 + TSS region transcription start site region 142715
Tssr142716 17 13846153 to 13846160 7 + TSS region transcription start site region 142716
Tssr142717 17 13846172 to 13846183 11 + TSS region transcription start site region 142717
Tssr142718 17 13846191 to 13846196 5 + TSS region transcription start site region 142718
Tssr142719 17 13846757 to 13846766 9 + TSS region transcription start site region 142719
Tssr142720 17 13850050 to 13850055 5 + TSS region transcription start site region 142720
Gm3355 17 13862317 to 13862803 486 - pseudogene predicted gene 3355
Tssr5012 17 13867565 to 13867596 31 + TSS region transcription start site region 5012
Tssr142721 17 13874478 to 13874500 22 + TSS region transcription start site region 142721
Tssr142722 17 13874522 to 13874537 15 + TSS region transcription start site region 142722
Tssr142723 17 13874538 to 13874557 19 + TSS region transcription start site region 142723
Tssr142724 17 13874562 to 13874582 20 + TSS region transcription start site region 142724
Tssr142725 17 13874901 to 13874912 11 + TSS region transcription start site region 142725
Tssr142726 17 13874916 to 13874926 10 + TSS region transcription start site region 142726
Tssr146490 17 13899204 to 13899211 7 - TSS region transcription start site region 146490
Gm49121 17 13911248 to 13936778 25530 + pseudogene predicted gene, 49121
Gm7168 17 13948373 to 13950678 2305 + protein coding gene predicted gene 7168
Gm33889 17 13991607 to 13998962 7355 - lncRNA gene predicted gene, 33889
Gm7356 17 14000224 to 14003393 3169 - protein coding gene predicted gene 7356
Gm34107 17 14050060 to 14057117 7057 - lncRNA gene predicted gene, 34107
Gm7358 17 14057225 to 14059531 2306 - protein coding gene predicted gene 7358
4930488N24Rik 17 14104924 to 14106450 1526 - pseudogene RIKEN cDNA 4930488N24 gene
Gm49903 17 14125868 to 14126297 429 - pseudogene predicted gene, 49903
D17Jcs122 17 14129978 to 14130192 214 DNA segment DNA segment, Chr 17, John C. Schimenti 122
Gm34426 17 14169641 to 14170941 1300 + lncRNA gene predicted gene, 34426
Tssr142727 17 14169692 to 14169703 11 + TSS region transcription start site region 142727
Tssr142728 17 14169707 to 14169733 26 + TSS region transcription start site region 142728
Dact2 17 14195230 to 14204337 9107 - protein coding gene dishevelled-binding antagonist of beta-catenin 2
Tssr5013 17 14202525 to 14202529 4 + TSS region transcription start site region 5013
Cpgi8625 17 14202989 to 14204299 1310 CpG island CpG island 8625
Tssr146491 17 14203695 to 14203779 84 - TSS region transcription start site region 146491
Gm34510 17 14203719 to 14212602 8883 + antisense lncRNA gene predicted gene, 34510
Tssr142729 17 14203720 to 14203765 45 + TSS region transcription start site region 142729
Tssr146492 17 14204234 to 14204251 17 - TSS region transcription start site region 146492
Tssr146493 17 14204257 to 14204281 24 - TSS region transcription start site region 146493
Gm41531 17 14226084 to 14239480 13396 + lncRNA gene predicted gene, 41531
Tssr142730 17 14226551 to 14226569 18 + TSS region transcription start site region 142730
D17Jcs35 17 14229341 to 14229597 256 DNA segment DNA segment, Chr 17, John C. Schimenti 35
Gm34772 17 14246418 to 14253614 7196 - lncRNA gene predicted gene, 34772
Tssr142731 17 14249732 to 14249741 9 + TSS region transcription start site region 142731
Tssr142732 17 14249809 to 14249830 21 + TSS region transcription start site region 142732
Tssr142733 17 14249833 to 14249856 23 + TSS region transcription start site region 142733
Gm34567 17 14249851 to 14277755 27904 + lincRNA gene predicted gene, 34567
Tssr142734 17 14249884 to 14249897 13 + TSS region transcription start site region 142734
Tssr146494 17 14252702 to 14252711 9 - TSS region transcription start site region 146494
Tssr142735 17 14261053 to 14261054 1 + TSS region transcription start site region 142735
Cpgi8626 17 14278967 to 14280871 1904 CpG island CpG island 8626
Smoc2 17 14279506 to 14404790 125284 + protein coding gene SPARC related modular calcium binding 2
Tssr142736 17 14279506 to 14279513 7 + TSS region transcription start site region 142736
Tssr142737 17 14279531 to 14279550 19 + TSS region transcription start site region 142737
D17Jcs34 17 14332737 to 14333003 266 DNA segment DNA segment, Chr 17, John C. Schimenti 34
D17Jcs33 17 14381888 to 14382135 247 DNA segment DNA segment, Chr 17, John C. Schimenti 33
4930474M22Rik 17 14389113 to 14398942 9829 - antisense lncRNA gene RIKEN cDNA 4930474M22 gene
Tssr146495 17 14398931 to 14398941 10 - TSS region transcription start site region 146495
Tssr5014 17 14398944 to 14398952 8 - TSS region transcription start site region 5014
Tssr142738 17 14399027 to 14399036 9 + TSS region transcription start site region 142738
Tssr142739 17 14399235 to 14399246 11 + TSS region transcription start site region 142739
Tssr142740 17 14399260 to 14399272 12 + TSS region transcription start site region 142740
Gm49720 17 14413490 to 14413946 456 + pseudogene predicted gene, 49720
Gm38551 17 14449882 to 14488180 38298 + lincRNA gene predicted gene, 38551
Gm34916 17 14503452 to 14522426 18974 - lncRNA gene predicted gene, 34916
Tssr142741 17 14512854 to 14512856 2 + TSS region transcription start site region 142741
D17Jcs32 17 14513737 to 14513939 202 DNA segment DNA segment, Chr 17, John C. Schimenti 32
Tssr142742 17 14546341 to 14546361 20 + TSS region transcription start site region 142742