Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:12845042-13566209

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tme 17 12378609 to 13018119 639510 heritable phenotypic marker T-associated maternal effect
Airn 17 12741311 to 12859884 118573 + antisense lncRNA gene antisense Igf2r RNA
Mas1 17 12841079 to 12868143 27064 - protein coding gene MAS1 oncogene
Tssr146453 17 12851895 to 12851916 21 - TSS region transcription start site region 146453
Tssr142658 17 12859060 to 12859069 9 + TSS region transcription start site region 142658
Gm24085 17 12865125 to 12865240 115 - miRNA gene predicted gene, 24085
Tssr142659 17 12867024 to 12867037 13 + TSS region transcription start site region 142659
D17Jcs61 17 12867515 to 12867938 423 DNA segment DNA segment, Chr 17, John C. Schimenti 61
Tssr146454 17 12868126 to 12868148 22 - TSS region transcription start site region 146454
Mrgprh 17 12876034 to 12877842 1808 + protein coding gene MAS-related GPR, member H
Tssr142660 17 12878665 to 12878668 3 + TSS region transcription start site region 142660
Cpgi8615 17 12879963 to 12880381 418 CpG island CpG island 8615
Pnldc1 17 12888729 to 12910230 21501 - protein coding gene poly(A)-specific ribonuclease (PARN)-like domain containing 1
Tssr146455 17 12895572 to 12895579 7 - TSS region transcription start site region 146455
Tssr146456 17 12895593 to 12895609 16 - TSS region transcription start site region 146456
Gm49926 17 12897537 to 12899705 2168 + antisense lncRNA gene predicted gene, 49926
Cpgi8616 17 12909748 to 12910107 359 CpG island CpG island 8616
Tssr146457 17 12909871 to 12909877 6 - TSS region transcription start site region 146457
Tssr146458 17 12909881 to 12909897 16 - TSS region transcription start site region 146458
Tssr146459 17 12909912 to 12909954 42 - TSS region transcription start site region 146459
Tssr142661 17 12909963 to 12910012 49 + TSS region transcription start site region 142661
Mrpl18 17 12911349 to 12916345 4996 - protein coding gene mitochondrial ribosomal protein L18
Cpgi8617 17 12915541 to 12917017 1476 CpG island CpG island 8617
Tssr146460 17 12915635 to 12915656 21 - TSS region transcription start site region 146460
Tssr146461 17 12916002 to 12916044 42 - TSS region transcription start site region 146461
Tssr146462 17 12916091 to 12916119 28 - TSS region transcription start site region 146462
Tcp1 17 12916329 to 12925067 8738 + protein coding gene t-complex protein 1
Tssr142662 17 12916385 to 12916403 18 + TSS region transcription start site region 142662
Tssr146463 17 12916389 to 12916408 19 - TSS region transcription start site region 146463
Tssr142663 17 12916426 to 12916447 21 + TSS region transcription start site region 142663
Tssr142664 17 12916457 to 12916475 18 + TSS region transcription start site region 142664
Tssr142665 17 12916494 to 12916515 21 + TSS region transcription start site region 142665
Tssr146464 17 12916791 to 12916831 40 - TSS region transcription start site region 146464
Tssr142666 17 12917272 to 12917276 4 + TSS region transcription start site region 142666
Tssr142667 17 12918084 to 12918101 17 + TSS region transcription start site region 142667
Gm26130 17 12919585 to 12919722 137 + snoRNA gene predicted gene, 26130
Snora20 17 12922857 to 12922917 60 + snoRNA gene small nucleolar RNA, H/ACA box 20
Acat3 17 12923959 to 12940396 16437 - protein coding gene acetyl-Coenzyme A acetyltransferase 3
Gm20591 17 12936170 to 12943675 7505 + pseudogene predicted gene, 20591
Cpgi8618 17 12940088 to 12940392 304 CpG island CpG island 8618
Tssr146465 17 12940317 to 12940370 53 - TSS region transcription start site region 146465
Acat2 17 12943042 to 12960725 17683 - protein coding gene acetyl-Coenzyme A acetyltransferase 2
Cpgi8619 17 12960185 to 12961056 871 CpG island CpG island 8619
Tssr146466 17 12960306 to 12960386 80 - TSS region transcription start site region 146466
Tssr146467 17 12960701 to 12960723 22 - TSS region transcription start site region 146467
Tssr146468 17 12960729 to 12960738 9 - TSS region transcription start site region 146468
Gm15946 17 12962768 to 12963190 422 + pseudogene predicted gene 15946
Wtap 17 12966799 to 12992624 25825 - protein coding gene Wilms tumour 1-associating protein
Tssr142668 17 12990999 to 12991012 13 + TSS region transcription start site region 142668
Tssr146469 17 12991545 to 12991548 3 - TSS region transcription start site region 146469
Cpgi8620 17 12991703 to 12993021 1318 CpG island CpG island 8620
Tssr142669 17 12991850 to 12991900 50 + TSS region transcription start site region 142669
Tssr146470 17 12992172 to 12992186 14 - TSS region transcription start site region 146470
Tssr146471 17 12992188 to 12992226 38 - TSS region transcription start site region 146471
Tssr146472 17 12992227 to 12992249 22 - TSS region transcription start site region 146472
Tssr146473 17 12992487 to 12992554 67 - TSS region transcription start site region 146473
Tssr146474 17 12992585 to 12992598 13 - TSS region transcription start site region 146474
Tssr146475 17 12992603 to 12992648 45 - TSS region transcription start site region 146475
Tssr146476 17 12994167 to 12994171 4 - TSS region transcription start site region 146476
Cpgi8621 17 13007456 to 13008824 1368 CpG island CpG island 8621
Tssr142670 17 13007694 to 13007704 10 + TSS region transcription start site region 142670
Tssr146477 17 13007708 to 13007734 26 - TSS region transcription start site region 146477
Sod2 17 13007839 to 13018119 10280 + protein coding gene superoxide dismutase 2, mitochondrial
Tssr142671 17 13007924 to 13007954 30 + TSS region transcription start site region 142671
Tssr142672 17 13007955 to 13007988 33 + TSS region transcription start site region 142672
Tssr142673 17 13008158 to 13008188 30 + TSS region transcription start site region 142673
Tssr142674 17 13008189 to 13008192 3 + TSS region transcription start site region 142674
Tssr142675 17 13008200 to 13008211 11 + TSS region transcription start site region 142675
Tssr142676 17 13008241 to 13008252 11 + TSS region transcription start site region 142676
Tssr142677 17 13008285 to 13008297 12 + TSS region transcription start site region 142677
Tssr146478 17 13008302 to 13008354 52 - TSS region transcription start site region 146478
Tssr146479 17 13008355 to 13008396 41 - TSS region transcription start site region 146479
Tssr142678 17 13008395 to 13008399 4 + TSS region transcription start site region 142678
Tssr142679 17 13008700 to 13008712 12 + TSS region transcription start site region 142679
Tssr5007 17 13010263 to 13010266 3 + TSS region transcription start site region 5007
Tssr142680 17 13010314 to 13010321 7 + TSS region transcription start site region 142680
Tssr142681 17 13010333 to 13010344 11 + TSS region transcription start site region 142681
Tssr142682 17 13010358 to 13010404 46 + TSS region transcription start site region 142682
Tssr142683 17 13010515 to 13010530 15 + TSS region transcription start site region 142683
Tssr142684 17 13010875 to 13010889 14 + TSS region transcription start site region 142684
Tssr142685 17 13011207 to 13011211 4 + TSS region transcription start site region 142685
Tssr142686 17 13012116 to 13012129 13 + TSS region transcription start site region 142686
Tssr142687 17 13013181 to 13013202 21 + TSS region transcription start site region 142687
Tssr142688 17 13013460 to 13013499 39 + TSS region transcription start site region 142688
Tssr142689 17 13013506 to 13013587 81 + TSS region transcription start site region 142689
Tssr142690 17 13014552 to 13014556 4 + TSS region transcription start site region 142690
Tssr142691 17 13015021 to 13015035 14 + TSS region transcription start site region 142691
Tssr142692 17 13015087 to 13015101 14 + TSS region transcription start site region 142692
Tssr142693 17 13015128 to 13015140 12 + TSS region transcription start site region 142693
Tssr142694 17 13015164 to 13015179 15 + TSS region transcription start site region 142694
Tssr142695 17 13015204 to 13015224 20 + TSS region transcription start site region 142695
Tssr142696 17 13015246 to 13015261 15 + TSS region transcription start site region 142696
Tssr142697 17 13015517 to 13015533 16 + TSS region transcription start site region 142697
Tssr142698 17 13016278 to 13016289 11 + TSS region transcription start site region 142698
Tssr142699 17 13016409 to 13016428 19 + TSS region transcription start site region 142699
Tssr142700 17 13016540 to 13016550 10 + TSS region transcription start site region 142700
Tssr142701 17 13016589 to 13016594 5 + TSS region transcription start site region 142701
Tssr142702 17 13016629 to 13016644 15 + TSS region transcription start site region 142702
Tssr142703 17 13016665 to 13016683 18 + TSS region transcription start site region 142703
Tssr142704 17 13016736 to 13016740 4 + TSS region transcription start site region 142704
Tssr142705 17 13016954 to 13016985 31 + TSS region transcription start site region 142705
Tssr142706 17 13017027 to 13017081 54 + TSS region transcription start site region 142706
Tssr142707 17 13017086 to 13017092 6 + TSS region transcription start site region 142707
Tssr142708 17 13017200 to 13017213 13 + TSS region transcription start site region 142708
Gm36117 17 13033560 to 13040063 6503 + lncRNA gene predicted gene, 36117
Gpr31b 17 13051321 to 13052280 959 - protein coding gene G protein-coupled receptor 31, D17Leh66b region
Gm36226 17 13054612 to 13061020 6408 - lncRNA gene predicted gene, 36226
Tssr142709 17 13061099 to 13061112 13 + TSS region transcription start site region 142709
Tcp10b 17 13061109 to 13082226 21117 + protein coding gene t-complex protein 10b
Gm11166 17 13096679 to 13098472 1793 - lncRNA gene predicted gene 11166
Unc93a 17 13108617 to 13131810 23193 - protein coding gene unc-93 homolog A
Gm23050 17 13120531 to 13120695 164 - snRNA gene predicted gene, 23050
Gm36277 17 13132603 to 13143678 11075 + lncRNA gene predicted gene, 36277
Gm36798 17 13170362 to 13183762 13400 - lncRNA gene predicted gene, 36798
D17Mit222a 17 13184304 to 13184428 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 222a
Gm49898 17 13195878 to 13204448 8570 + lincRNA gene predicted gene, 49898
Gm10512 17 13205042 to 13206209 1167 + lncRNA gene predicted gene 10512
Smok2a 17 13221188 to 13227658 6470 + protein coding gene sperm motility kinase 2A
Tssr142710 17 13230210 to 13230214 4 + TSS region transcription start site region 142710
Smok2b 17 13230263 to 13237189 6926 + protein coding gene sperm motility kinase 2B
Gm26500 17 13249895 to 13250000 105 - snRNA gene predicted gene, 26500
Gm36589 17 13319921 to 13327352 7431 - lncRNA gene predicted gene, 36589
Gm36684 17 13330748 to 13333842 3094 + lincRNA gene predicted gene, 36684
Gpr31c 17 13344829 to 13345786 957 - pseudogene G protein-coupled receptor 31, D17Leh66c region
Tssr146480 17 13345800 to 13345802 2 - TSS region transcription start site region 146480
Gm36537 17 13349818 to 13354571 4753 - lncRNA gene predicted gene, 36537
Tcp10c 17 13354572 to 13377223 22651 + protein coding gene t-complex protein 10c
Gm19283 17 13384026 to 13385580 1554 - pseudogene predicted gene, 19283
Gm49934 17 13385186 to 13396325 11139 - unclassified gene predicted gene, 49934
Gm8597 17 13394025 to 13404191 10166 - pseudogene predicted gene 8597
Gm25730 17 13399042 to 13399206 164 - snRNA gene predicted gene, 25730
Rnu6 17 13432033 to 13432139 106 - snRNA gene U6 small nuclear RNA
D17Mit222b 17 13467561 to 13467669 108 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 222b
2700054A10Rik 17 13487021 to 13554094 67073 - lincRNA gene RIKEN cDNA 2700054A10 gene
Gm49936 17 13489273 to 13761378 272105 - lincRNA gene predicted gene, 49936
Gm16050 17 13500954 to 13511193 10239 + lincRNA gene predicted gene 16050
Gm8603 17 13516755 to 13518269 1514 + pseudogene predicted gene 8603
Smok4a 17 13521456 to 13528433 6977 + pseudogene sperm motility kinase 4A
Gm26375 17 13534064 to 13534169 105 - snRNA gene predicted gene, 26375