Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:12788126-12948148

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Airn 17 12741311 to 12859884 118573 + antisense lncRNA gene antisense Igf2r RNA
Gm49959 17 12784882 to 12791660 6778 - lincRNA gene predicted gene, 49959
Tssr142642 17 12788311 to 12788326 15 + TSS region transcription start site region 142642
Tssr142643 17 12789175 to 12789186 11 + TSS region transcription start site region 142643
Tssr142644 17 12791093 to 12791097 4 + TSS region transcription start site region 142644
Tssr142645 17 12792885 to 12792906 21 + TSS region transcription start site region 142645
Tssr142646 17 12793341 to 12793344 3 + TSS region transcription start site region 142646
Tssr142647 17 12793935 to 12793938 3 + TSS region transcription start site region 142647
Gm49958 17 12795746 to 12800795 5049 - lincRNA gene predicted gene, 49958
D17Jcs62 17 12795884 to 12796085 201 DNA segment DNA segment, Chr 17, John C. Schimenti 62
Tssr142648 17 12798595 to 12798609 14 + TSS region transcription start site region 142648
Tssr142649 17 12798974 to 12799004 30 + TSS region transcription start site region 142649
Tssr142650 17 12799144 to 12799162 18 + TSS region transcription start site region 142650
Tssr142651 17 12805627 to 12805652 25 + TSS region transcription start site region 142651
Tssr142652 17 12806115 to 12806147 32 + TSS region transcription start site region 142652
Tssr142653 17 12807166 to 12807204 38 + TSS region transcription start site region 142653
Tssr142654 17 12810542 to 12810564 22 + TSS region transcription start site region 142654
Gm16574 17 12818793 to 12819537 744 + pseudogene predicted gene 16574
Gm7162 17 12819819 to 12820842 1023 - pseudogene predicted gene 7162
Tssr142655 17 12821537 to 12821555 18 + TSS region transcription start site region 142655
Tssr142656 17 12822085 to 12822088 3 + TSS region transcription start site region 142656
Tssr142657 17 12823403 to 12823417 14 + TSS region transcription start site region 142657
Gm17592 17 12837815 to 12838158 343 - pseudogene predicted gene, 17592
Mas1 17 12841079 to 12868143 27064 - protein coding gene MAS1 oncogene
Tssr146453 17 12851895 to 12851916 21 - TSS region transcription start site region 146453
Tssr142658 17 12859060 to 12859069 9 + TSS region transcription start site region 142658
Gm24085 17 12865125 to 12865240 115 - miRNA gene predicted gene, 24085
Tssr142659 17 12867024 to 12867037 13 + TSS region transcription start site region 142659
D17Jcs61 17 12867515 to 12867938 423 DNA segment DNA segment, Chr 17, John C. Schimenti 61
Tssr146454 17 12868126 to 12868148 22 - TSS region transcription start site region 146454
Mrgprh 17 12876034 to 12877842 1808 + protein coding gene MAS-related GPR, member H
Tssr142660 17 12878665 to 12878668 3 + TSS region transcription start site region 142660
Cpgi8615 17 12879963 to 12880381 418 CpG island CpG island 8615
Pnldc1 17 12888729 to 12910230 21501 - protein coding gene poly(A)-specific ribonuclease (PARN)-like domain containing 1
Tssr146455 17 12895572 to 12895579 7 - TSS region transcription start site region 146455
Tssr146456 17 12895593 to 12895609 16 - TSS region transcription start site region 146456
Gm49926 17 12897537 to 12899705 2168 + antisense lncRNA gene predicted gene, 49926
Cpgi8616 17 12909748 to 12910107 359 CpG island CpG island 8616
Tssr146457 17 12909871 to 12909877 6 - TSS region transcription start site region 146457
Tssr146458 17 12909881 to 12909897 16 - TSS region transcription start site region 146458
Tssr146459 17 12909912 to 12909954 42 - TSS region transcription start site region 146459
Tssr142661 17 12909963 to 12910012 49 + TSS region transcription start site region 142661
Mrpl18 17 12911349 to 12916345 4996 - protein coding gene mitochondrial ribosomal protein L18
Cpgi8617 17 12915541 to 12917017 1476 CpG island CpG island 8617
Tssr146460 17 12915635 to 12915656 21 - TSS region transcription start site region 146460
Tssr146461 17 12916002 to 12916044 42 - TSS region transcription start site region 146461
Tssr146462 17 12916091 to 12916119 28 - TSS region transcription start site region 146462
Tcp1 17 12916329 to 12925067 8738 + protein coding gene t-complex protein 1
Tssr142662 17 12916385 to 12916403 18 + TSS region transcription start site region 142662
Tssr146463 17 12916389 to 12916408 19 - TSS region transcription start site region 146463
Tssr142663 17 12916426 to 12916447 21 + TSS region transcription start site region 142663
Tssr142664 17 12916457 to 12916475 18 + TSS region transcription start site region 142664
Tssr142665 17 12916494 to 12916515 21 + TSS region transcription start site region 142665
Tssr146464 17 12916791 to 12916831 40 - TSS region transcription start site region 146464
Tssr142666 17 12917272 to 12917276 4 + TSS region transcription start site region 142666
Tssr142667 17 12918084 to 12918101 17 + TSS region transcription start site region 142667
Gm26130 17 12919585 to 12919722 137 + snoRNA gene predicted gene, 26130
Snora20 17 12922857 to 12922917 60 + snoRNA gene small nucleolar RNA, H/ACA box 20
Acat3 17 12923959 to 12940396 16437 - protein coding gene acetyl-Coenzyme A acetyltransferase 3
Gm20591 17 12936170 to 12943675 7505 + pseudogene predicted gene, 20591
Cpgi8618 17 12940088 to 12940392 304 CpG island CpG island 8618
Tssr146465 17 12940317 to 12940370 53 - TSS region transcription start site region 146465
Acat2 17 12943042 to 12960725 17683 - protein coding gene acetyl-Coenzyme A acetyltransferase 2