Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:12676115-12936147

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D17Jcs63 17 12677353 to 12677526 173 DNA segment DNA segment, Chr 17, John C. Schimenti 63
Igf2r 17 12682406 to 12769664 87258 - protein coding gene insulin-like growth factor 2 receptor
Tssr146439 17 12682815 to 12682820 5 - TSS region transcription start site region 146439
Tssr146440 17 12688558 to 12688565 7 - TSS region transcription start site region 146440
Tssr146441 17 12688769 to 12688774 5 - TSS region transcription start site region 146441
Tssr146442 17 12691981 to 12691986 5 - TSS region transcription start site region 146442
Tssr146443 17 12691996 to 12692012 16 - TSS region transcription start site region 146443
Tssr146444 17 12692018 to 12692021 3 - TSS region transcription start site region 146444
Tssr146445 17 12692036 to 12692044 8 - TSS region transcription start site region 146445
Tssr146446 17 12692047 to 12692067 20 - TSS region transcription start site region 146446
Tssr146447 17 12716019 to 12716031 12 - TSS region transcription start site region 146447
Tssr146448 17 12725397 to 12725421 24 - TSS region transcription start site region 146448
Tssr146449 17 12740578 to 12740608 30 - TSS region transcription start site region 146449
Airn 17 12741311 to 12859884 118573 + antisense lncRNA gene antisense Igf2r RNA
Tssr142624 17 12741339 to 12741350 11 + TSS region transcription start site region 142624
Tssr142625 17 12741360 to 12741384 24 + TSS region transcription start site region 142625
Cpgi8613 17 12741360 to 12742660 1300 CpG island CpG island 8613
Tssr142626 17 12741385 to 12741399 14 + TSS region transcription start site region 142626
Tssr142627 17 12744692 to 12744700 8 + TSS region transcription start site region 142627
Tssr142628 17 12745851 to 12745887 36 + TSS region transcription start site region 142628
Tssr142629 17 12746488 to 12746500 12 + TSS region transcription start site region 142629
Tssr142630 17 12746531 to 12746543 12 + TSS region transcription start site region 142630
Tssr142631 17 12746671 to 12746684 13 + TSS region transcription start site region 142631
Tssr142632 17 12748375 to 12748379 4 + TSS region transcription start site region 142632
Tssr142633 17 12754813 to 12754827 14 + TSS region transcription start site region 142633
Tssr142634 17 12755434 to 12755456 22 + TSS region transcription start site region 142634
Tssr142635 17 12756018 to 12756032 14 + TSS region transcription start site region 142635
Tssr142636 17 12759189 to 12759201 12 + TSS region transcription start site region 142636
Tssr142637 17 12760178 to 12760183 5 + TSS region transcription start site region 142637
Tssr142638 17 12762929 to 12762935 6 + TSS region transcription start site region 142638
Tssr146450 17 12764013 to 12764016 3 - TSS region transcription start site region 146450
Tssr142639 17 12765349 to 12765375 26 + TSS region transcription start site region 142639
Cpgi8614 17 12769019 to 12770184 1165 CpG island CpG island 8614
Tssr146451 17 12769605 to 12769700 95 - TSS region transcription start site region 146451
Tssr146452 17 12769702 to 12769727 25 - TSS region transcription start site region 146452
Gm23833 17 12770631 to 12770882 251 + unclassified non-coding RNA gene predicted gene, 23833
Tssr142640 17 12775217 to 12775228 11 + TSS region transcription start site region 142640
Tssr142641 17 12775241 to 12775252 11 + TSS region transcription start site region 142641
Gm49959 17 12784882 to 12791660 6778 - lincRNA gene predicted gene, 49959
Tssr142642 17 12788311 to 12788326 15 + TSS region transcription start site region 142642
Tssr142643 17 12789175 to 12789186 11 + TSS region transcription start site region 142643
Tssr142644 17 12791093 to 12791097 4 + TSS region transcription start site region 142644
Tssr142645 17 12792885 to 12792906 21 + TSS region transcription start site region 142645
Tssr142646 17 12793341 to 12793344 3 + TSS region transcription start site region 142646
Tssr142647 17 12793935 to 12793938 3 + TSS region transcription start site region 142647
Gm49958 17 12795746 to 12800795 5049 - lincRNA gene predicted gene, 49958
D17Jcs62 17 12795884 to 12796085 201 DNA segment DNA segment, Chr 17, John C. Schimenti 62
Tssr142648 17 12798595 to 12798609 14 + TSS region transcription start site region 142648
Tssr142649 17 12798974 to 12799004 30 + TSS region transcription start site region 142649
Tssr142650 17 12799144 to 12799162 18 + TSS region transcription start site region 142650
Tssr142651 17 12805627 to 12805652 25 + TSS region transcription start site region 142651
Tssr142652 17 12806115 to 12806147 32 + TSS region transcription start site region 142652
Tssr142653 17 12807166 to 12807204 38 + TSS region transcription start site region 142653
Tssr142654 17 12810542 to 12810564 22 + TSS region transcription start site region 142654
Gm16574 17 12818793 to 12819537 744 + pseudogene predicted gene 16574
Gm7162 17 12819819 to 12820842 1023 - pseudogene predicted gene 7162
Tssr142655 17 12821537 to 12821555 18 + TSS region transcription start site region 142655
Tssr142656 17 12822085 to 12822088 3 + TSS region transcription start site region 142656
Tssr142657 17 12823403 to 12823417 14 + TSS region transcription start site region 142657
Gm17592 17 12837815 to 12838158 343 - pseudogene predicted gene, 17592
Mas1 17 12841079 to 12868143 27064 - protein coding gene MAS1 oncogene
Tssr146453 17 12851895 to 12851916 21 - TSS region transcription start site region 146453
Tssr142658 17 12859060 to 12859069 9 + TSS region transcription start site region 142658
Gm24085 17 12865125 to 12865240 115 - miRNA gene predicted gene, 24085
Tssr142659 17 12867024 to 12867037 13 + TSS region transcription start site region 142659
D17Jcs61 17 12867515 to 12867938 423 DNA segment DNA segment, Chr 17, John C. Schimenti 61
Tssr146454 17 12868126 to 12868148 22 - TSS region transcription start site region 146454
Mrgprh 17 12876034 to 12877842 1808 + protein coding gene MAS-related GPR, member H
Tssr142660 17 12878665 to 12878668 3 + TSS region transcription start site region 142660
Cpgi8615 17 12879963 to 12880381 418 CpG island CpG island 8615
Pnldc1 17 12888729 to 12910230 21501 - protein coding gene poly(A)-specific ribonuclease (PARN)-like domain containing 1
Tssr146455 17 12895572 to 12895579 7 - TSS region transcription start site region 146455
Tssr146456 17 12895593 to 12895609 16 - TSS region transcription start site region 146456
Gm49926 17 12897537 to 12899705 2168 + antisense lncRNA gene predicted gene, 49926
Cpgi8616 17 12909748 to 12910107 359 CpG island CpG island 8616
Tssr146457 17 12909871 to 12909877 6 - TSS region transcription start site region 146457
Tssr146458 17 12909881 to 12909897 16 - TSS region transcription start site region 146458
Tssr146459 17 12909912 to 12909954 42 - TSS region transcription start site region 146459
Tssr142661 17 12909963 to 12910012 49 + TSS region transcription start site region 142661
Mrpl18 17 12911349 to 12916345 4996 - protein coding gene mitochondrial ribosomal protein L18
Cpgi8617 17 12915541 to 12917017 1476 CpG island CpG island 8617
Tssr146460 17 12915635 to 12915656 21 - TSS region transcription start site region 146460
Tssr146461 17 12916002 to 12916044 42 - TSS region transcription start site region 146461
Tssr146462 17 12916091 to 12916119 28 - TSS region transcription start site region 146462
Tcp1 17 12916329 to 12925067 8738 + protein coding gene t-complex protein 1
Tssr142662 17 12916385 to 12916403 18 + TSS region transcription start site region 142662
Tssr146463 17 12916389 to 12916408 19 - TSS region transcription start site region 146463
Tssr142663 17 12916426 to 12916447 21 + TSS region transcription start site region 142663
Tssr142664 17 12916457 to 12916475 18 + TSS region transcription start site region 142664
Tssr142665 17 12916494 to 12916515 21 + TSS region transcription start site region 142665
Tssr146464 17 12916791 to 12916831 40 - TSS region transcription start site region 146464
Tssr142666 17 12917272 to 12917276 4 + TSS region transcription start site region 142666
Tssr142667 17 12918084 to 12918101 17 + TSS region transcription start site region 142667
Gm26130 17 12919585 to 12919722 137 + snoRNA gene predicted gene, 26130
Snora20 17 12922857 to 12922917 60 + snoRNA gene small nucleolar RNA, H/ACA box 20
Acat3 17 12923959 to 12940396 16437 - protein coding gene acetyl-Coenzyme A acetyltransferase 3