MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 17:12194156-12340856

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17 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Agpat4	17	12118709 to 12219649	100940	+	protein coding gene	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
Tssr142594	17	12195366 to 12195371	5	+	TSS region	transcription start site region 142594
Map3k4	17	12227621 to 12318796	91175	-	protein coding gene	mitogen-activated protein kinase kinase kinase 4
Gm46605	17	12264156 to 12270856	6700	+	lncRNA gene	predicted gene, 46605
D17Jcs66	17	12274244 to 12274424	180		DNA segment	DNA segment, Chr 17, John C. Schimenti 66
Tssr146417	17	12276389 to 12276391	2	-	TSS region	transcription start site region 146417
Gm49962	17	12280117 to 12280534	417	+	pseudogene	predicted gene, 49962
Gm24794	17	12301036 to 12301175	139	+	snoRNA gene	predicted gene, 24794
Cpgi8611	17	12318008 to 12319137	1129		CpG island	CpG island 8611
Tssr142595	17	12318069 to 12318074	5	+	TSS region	transcription start site region 142595
Tssr146418	17	12318672 to 12318684	12	-	TSS region	transcription start site region 146418
Tssr146419	17	12318704 to 12318713	9	-	TSS region	transcription start site region 146419
Tssr146420	17	12318767 to 12318803	36	-	TSS region	transcription start site region 146420
Tssr5005	17	12318807 to 12318815	8	-	TSS region	transcription start site region 5005
4732491K20Rik	17	12318853 to 12327250	8397	+	bidirectional promoter lncRNA gene	RIKEN cDNA 4732491K20 gene
Tssr142596	17	12318862 to 12318905	43	+	TSS region	transcription start site region 142596
Gm49964	17	12319015 to 12320728	1713	-	lincRNA gene	predicted gene, 49964