Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:12098091-12708102

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr146416 17 12108053 to 12108061 8 - TSS region transcription start site region 146416
Agpat4 17 12118709 to 12219649 100940 + protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
Cpgi8610 17 12118840 to 12119053 213 CpG island CpG island 8610
Tssr142588 17 12119154 to 12119180 26 + TSS region transcription start site region 142588
Tssr142589 17 12119251 to 12119265 14 + TSS region transcription start site region 142589
Tssr142590 17 12119274 to 12119348 74 + TSS region transcription start site region 142590
Tssr142591 17 12119350 to 12119361 11 + TSS region transcription start site region 142591
Tssr142592 17 12119365 to 12119377 12 + TSS region transcription start site region 142592
D17Jcs67 17 12150749 to 12150937 188 DNA segment DNA segment, Chr 17, John C. Schimenti 67
Tssr142593 17 12151705 to 12151723 18 + TSS region transcription start site region 142593
Tssr5004 17 12165846 to 12165850 4 + TSS region transcription start site region 5004
Tdgf1-ps2 17 12189910 to 12190445 535 + pseudogene teratocarcinoma-derived growth factor, pseudogene 2
Tssr142594 17 12195366 to 12195371 5 + TSS region transcription start site region 142594
Map3k4 17 12227621 to 12318796 91175 - protein coding gene mitogen-activated protein kinase kinase kinase 4
Gm46605 17 12264156 to 12270856 6700 + lncRNA gene predicted gene, 46605
D17Jcs66 17 12274244 to 12274424 180 DNA segment DNA segment, Chr 17, John C. Schimenti 66
Tssr146417 17 12276389 to 12276391 2 - TSS region transcription start site region 146417
Gm49962 17 12280117 to 12280534 417 + pseudogene predicted gene, 49962
Gm24794 17 12301036 to 12301175 139 + snoRNA gene predicted gene, 24794
Cpgi8611 17 12318008 to 12319137 1129 CpG island CpG island 8611
Tssr142595 17 12318069 to 12318074 5 + TSS region transcription start site region 142595
Tssr146418 17 12318672 to 12318684 12 - TSS region transcription start site region 146418
Tssr146419 17 12318704 to 12318713 9 - TSS region transcription start site region 146419
Tssr146420 17 12318767 to 12318803 36 - TSS region transcription start site region 146420
Tssr5005 17 12318807 to 12318815 8 - TSS region transcription start site region 5005
4732491K20Rik 17 12318853 to 12327250 8397 + bidirectional promoter lncRNA gene RIKEN cDNA 4732491K20 gene
Tssr142596 17 12318862 to 12318905 43 + TSS region transcription start site region 142596
Gm49964 17 12319015 to 12320728 1713 - lincRNA gene predicted gene, 49964
Gm6618 17 12356482 to 12357608 1126 + pseudogene predicted gene 6618
Gm41527 17 12359154 to 12370346 11192 - lncRNA gene predicted gene, 41527
Tssr142597 17 12378603 to 12378621 18 + TSS region transcription start site region 142597
Plg 17 12378609 to 12419384 40775 + protein coding gene plasminogen
Tme 17 12378609 to 13018119 639510 heritable phenotypic marker T-associated maternal effect
tclLub2 17 12378609 to 12675838 297229 heritable phenotypic marker t-complex lethal Lub2
Tssr142598 17 12378629 to 12378646 17 + TSS region transcription start site region 142598
Tssr142599 17 12378652 to 12378665 13 + TSS region transcription start site region 142599
Tssr142600 17 12382117 to 12382129 12 + TSS region transcription start site region 142600
Tssr142601 17 12382826 to 12382844 18 + TSS region transcription start site region 142601
Tssr142602 17 12384390 to 12384404 14 + TSS region transcription start site region 142602
Tssr142603 17 12390241 to 12390252 11 + TSS region transcription start site region 142603
Tssr142604 17 12390287 to 12390305 18 + TSS region transcription start site region 142604
Tssr142605 17 12391779 to 12391791 12 + TSS region transcription start site region 142605
Tssr142606 17 12391818 to 12391829 11 + TSS region transcription start site region 142606
Tssr146421 17 12393125 to 12393136 11 - TSS region transcription start site region 146421
Tssr142607 17 12393164 to 12393174 10 + TSS region transcription start site region 142607
Tssr142608 17 12395617 to 12395637 20 + TSS region transcription start site region 142608
Tssr146422 17 12395657 to 12395682 25 - TSS region transcription start site region 146422
Tssr142609 17 12396601 to 12396612 11 + TSS region transcription start site region 142609
Tssr142610 17 12396631 to 12396640 9 + TSS region transcription start site region 142610
Tssr142611 17 12403091 to 12403102 11 + TSS region transcription start site region 142611
Tssr142612 17 12404079 to 12404090 11 + TSS region transcription start site region 142612
Tssr142613 17 12409054 to 12409073 19 + TSS region transcription start site region 142613
Tssr142614 17 12410898 to 12410935 37 + TSS region transcription start site region 142614
Ceat1 17 12417795 to 26182159 13764364 QTL chronic experimental autoimmune thyroiditis 1
D17Mit114 17 12417795 to 12417944 149 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 114
Tssr142615 17 12419031 to 12419046 15 + TSS region transcription start site region 142615
Slc22a3 17 12419972 to 12507704 87732 - protein coding gene solute carrier family 22 (organic cation transporter), member 3
Tssr146423 17 12420451 to 12420456 5 - TSS region transcription start site region 146423
Tssr142616 17 12420928 to 12420933 5 + TSS region transcription start site region 142616
Gm3192 17 12430825 to 12431282 457 - pseudogene predicted gene 3192
Tssr142617 17 12466841 to 12466855 14 + TSS region transcription start site region 142617
C030013G03Rik 17 12466844 to 12479578 12734 + antisense lncRNA gene RIKEN cDNA C030013G03 gene
Cpgi8612 17 12506796 to 12507839 1043 CpG island CpG island 8612
Tssr146424 17 12507096 to 12507107 11 - TSS region transcription start site region 146424
Tssr146425 17 12507172 to 12507187 15 - TSS region transcription start site region 146425
Tssr146426 17 12507355 to 12507360 5 - TSS region transcription start site region 146426
Tssr146427 17 12507361 to 12507379 18 - TSS region transcription start site region 146427
Tssr146428 17 12507396 to 12507408 12 - TSS region transcription start site region 146428
Tssr146429 17 12507722 to 12507727 5 - TSS region transcription start site region 146429
D17Jcs64 17 12509508 to 12509784 276 DNA segment DNA segment, Chr 17, John C. Schimenti 64
Tssr5006 17 12550083 to 12550086 3 + TSS region transcription start site region 5006
Slc22a2 17 12584132 to 12628488 44356 + protein coding gene solute carrier family 22 (organic cation transporter), member 2
Tssr142618 17 12584183 to 12584195 12 + TSS region transcription start site region 142618
Tssr142619 17 12584215 to 12584236 21 + TSS region transcription start site region 142619
Tssr142620 17 12596344 to 12596360 16 + TSS region transcription start site region 142620
Tssr142621 17 12614707 to 12614716 9 + TSS region transcription start site region 142621
Tssr142622 17 12614749 to 12614755 6 + TSS region transcription start site region 142622
Tssr142623 17 12615283 to 12615290 7 + TSS region transcription start site region 142623
Slc22a1 17 12648869 to 12675829 26960 - protein coding gene solute carrier family 22 (organic cation transporter), member 1
Tssr146430 17 12652641 to 12652652 11 - TSS region transcription start site region 146430
Tssr146431 17 12652670 to 12652679 9 - TSS region transcription start site region 146431
Tssr146432 17 12652739 to 12652753 14 - TSS region transcription start site region 146432
Tssr146433 17 12674803 to 12674807 4 - TSS region transcription start site region 146433
Tssr146434 17 12675698 to 12675714 16 - TSS region transcription start site region 146434
Tssr146435 17 12675728 to 12675739 11 - TSS region transcription start site region 146435
Tssr146436 17 12675742 to 12675775 33 - TSS region transcription start site region 146436
Tssr146437 17 12675786 to 12675807 21 - TSS region transcription start site region 146437
Tssr146438 17 12675833 to 12675844 11 - TSS region transcription start site region 146438
D17Jcs63 17 12677353 to 12677526 173 DNA segment DNA segment, Chr 17, John C. Schimenti 63
Igf2r 17 12682406 to 12769664 87258 - protein coding gene insulin-like growth factor 2 receptor
Tssr146439 17 12682815 to 12682820 5 - TSS region transcription start site region 146439
Tssr146440 17 12688558 to 12688565 7 - TSS region transcription start site region 146440
Tssr146441 17 12688769 to 12688774 5 - TSS region transcription start site region 146441
Tssr146442 17 12691981 to 12691986 5 - TSS region transcription start site region 146442
Tssr146443 17 12691996 to 12692012 16 - TSS region transcription start site region 146443
Tssr146444 17 12692018 to 12692021 3 - TSS region transcription start site region 146444
Tssr146445 17 12692036 to 12692044 8 - TSS region transcription start site region 146445
Tssr146446 17 12692047 to 12692067 20 - TSS region transcription start site region 146446