Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:12089244-12459424

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr142587 17 12092710 to 12092711 1 + TSS region transcription start site region 142587
Tssr146416 17 12108053 to 12108061 8 - TSS region transcription start site region 146416
Agpat4 17 12118709 to 12219649 100940 + protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
Cpgi8610 17 12118840 to 12119053 213 CpG island CpG island 8610
Tssr142588 17 12119154 to 12119180 26 + TSS region transcription start site region 142588
Tssr142589 17 12119251 to 12119265 14 + TSS region transcription start site region 142589
Tssr142590 17 12119274 to 12119348 74 + TSS region transcription start site region 142590
Tssr142591 17 12119350 to 12119361 11 + TSS region transcription start site region 142591
Tssr142592 17 12119365 to 12119377 12 + TSS region transcription start site region 142592
D17Jcs67 17 12150749 to 12150937 188 DNA segment DNA segment, Chr 17, John C. Schimenti 67
Tssr142593 17 12151705 to 12151723 18 + TSS region transcription start site region 142593
Tssr5004 17 12165846 to 12165850 4 + TSS region transcription start site region 5004
Tdgf1-ps2 17 12189910 to 12190445 535 + pseudogene teratocarcinoma-derived growth factor, pseudogene 2
Tssr142594 17 12195366 to 12195371 5 + TSS region transcription start site region 142594
Map3k4 17 12227621 to 12318796 91175 - protein coding gene mitogen-activated protein kinase kinase kinase 4
Gm46605 17 12264156 to 12270856 6700 + lncRNA gene predicted gene, 46605
D17Jcs66 17 12274244 to 12274424 180 DNA segment DNA segment, Chr 17, John C. Schimenti 66
Tssr146417 17 12276389 to 12276391 2 - TSS region transcription start site region 146417
Gm49962 17 12280117 to 12280534 417 + pseudogene predicted gene, 49962
Gm24794 17 12301036 to 12301175 139 + snoRNA gene predicted gene, 24794
Cpgi8611 17 12318008 to 12319137 1129 CpG island CpG island 8611
Tssr142595 17 12318069 to 12318074 5 + TSS region transcription start site region 142595
Tssr146418 17 12318672 to 12318684 12 - TSS region transcription start site region 146418
Tssr146419 17 12318704 to 12318713 9 - TSS region transcription start site region 146419
Tssr146420 17 12318767 to 12318803 36 - TSS region transcription start site region 146420
Tssr5005 17 12318807 to 12318815 8 - TSS region transcription start site region 5005
4732491K20Rik 17 12318853 to 12327250 8397 + bidirectional promoter lncRNA gene RIKEN cDNA 4732491K20 gene
Tssr142596 17 12318862 to 12318905 43 + TSS region transcription start site region 142596
Gm49964 17 12319015 to 12320728 1713 - lincRNA gene predicted gene, 49964
Gm6618 17 12356482 to 12357608 1126 + pseudogene predicted gene 6618
Gm41527 17 12359154 to 12370346 11192 - lncRNA gene predicted gene, 41527
Tssr142597 17 12378603 to 12378621 18 + TSS region transcription start site region 142597
Tme 17 12378609 to 13018119 639510 heritable phenotypic marker T-associated maternal effect
tclLub2 17 12378609 to 12675838 297229 heritable phenotypic marker t-complex lethal Lub2
Plg 17 12378609 to 12419384 40775 + protein coding gene plasminogen
Tssr142598 17 12378629 to 12378646 17 + TSS region transcription start site region 142598
Tssr142599 17 12378652 to 12378665 13 + TSS region transcription start site region 142599
Tssr142600 17 12382117 to 12382129 12 + TSS region transcription start site region 142600
Tssr142601 17 12382826 to 12382844 18 + TSS region transcription start site region 142601
Tssr142602 17 12384390 to 12384404 14 + TSS region transcription start site region 142602
Tssr142603 17 12390241 to 12390252 11 + TSS region transcription start site region 142603
Tssr142604 17 12390287 to 12390305 18 + TSS region transcription start site region 142604
Tssr142605 17 12391779 to 12391791 12 + TSS region transcription start site region 142605
Tssr142606 17 12391818 to 12391829 11 + TSS region transcription start site region 142606
Tssr146421 17 12393125 to 12393136 11 - TSS region transcription start site region 146421
Tssr142607 17 12393164 to 12393174 10 + TSS region transcription start site region 142607
Tssr142608 17 12395617 to 12395637 20 + TSS region transcription start site region 142608
Tssr146422 17 12395657 to 12395682 25 - TSS region transcription start site region 146422
Tssr142609 17 12396601 to 12396612 11 + TSS region transcription start site region 142609
Tssr142610 17 12396631 to 12396640 9 + TSS region transcription start site region 142610
Tssr142611 17 12403091 to 12403102 11 + TSS region transcription start site region 142611
Tssr142612 17 12404079 to 12404090 11 + TSS region transcription start site region 142612
Tssr142613 17 12409054 to 12409073 19 + TSS region transcription start site region 142613
Tssr142614 17 12410898 to 12410935 37 + TSS region transcription start site region 142614
Ceat1 17 12417795 to 26182159 13764364 QTL chronic experimental autoimmune thyroiditis 1
D17Mit114 17 12417795 to 12417944 149 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 114
Tssr142615 17 12419031 to 12419046 15 + TSS region transcription start site region 142615
Slc22a3 17 12419972 to 12507704 87732 - protein coding gene solute carrier family 22 (organic cation transporter), member 3
Tssr146423 17 12420451 to 12420456 5 - TSS region transcription start site region 146423
Tssr142616 17 12420928 to 12420933 5 + TSS region transcription start site region 142616
Gm3192 17 12430825 to 12431282 457 - pseudogene predicted gene 3192