Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:11782621-12763796

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkn 17 10840384 to 12063361 1222977 + protein coding gene parkin RBR E3 ubiquitin protein ligase
Tssr146414 17 11861190 to 11861192 2 - TSS region transcription start site region 146414
D17Ertd648e 17 11863070 to 11883189 20119 - lncRNA gene DNA segment, Chr 17, ERATO Doi 648, expressed
Gm46604 17 11959483 to 12031404 71921 - lncRNA gene predicted gene, 46604
Tssr146415 17 11973534 to 11973580 46 - TSS region transcription start site region 146415
D17Mit113 17 11979442 to 11979566 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 113
Circp2 17 11979442 to 11979566 124 QTL circadian photosensitivity 2
Obrq13 17 11979442 to 24857795 12878353 QTL obesity resistance QTL 13
Nrq1 17 11979442 to 11979566 124 QTL noise-induced hearing loss resistant QTL 1
Nrq1a 17 11979442 to 11979566 124 QTL noise-induced hearing loss resistant QTL 1a
Tssr142586 17 12044708 to 12044719 11 + TSS region transcription start site region 142586
D17Mit245 17 12067324 to 12067523 199 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 245
Stheal11 17 12067324 to 83054339 70987015 QTL soft tissue heal 11
Tssr142587 17 12092710 to 12092711 1 + TSS region transcription start site region 142587
Tssr146416 17 12108053 to 12108061 8 - TSS region transcription start site region 146416
Agpat4 17 12118709 to 12219649 100940 + protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
Cpgi8610 17 12118840 to 12119053 213 CpG island CpG island 8610
Tssr142588 17 12119154 to 12119180 26 + TSS region transcription start site region 142588
Tssr142589 17 12119251 to 12119265 14 + TSS region transcription start site region 142589
Tssr142590 17 12119274 to 12119348 74 + TSS region transcription start site region 142590
Tssr142591 17 12119350 to 12119361 11 + TSS region transcription start site region 142591
Tssr142592 17 12119365 to 12119377 12 + TSS region transcription start site region 142592
D17Jcs67 17 12150749 to 12150937 188 DNA segment DNA segment, Chr 17, John C. Schimenti 67
Tssr142593 17 12151705 to 12151723 18 + TSS region transcription start site region 142593
Tssr5004 17 12165846 to 12165850 4 + TSS region transcription start site region 5004
Tdgf1-ps2 17 12189910 to 12190445 535 + pseudogene teratocarcinoma-derived growth factor, pseudogene 2
Tssr142594 17 12195366 to 12195371 5 + TSS region transcription start site region 142594
Map3k4 17 12227621 to 12318796 91175 - protein coding gene mitogen-activated protein kinase kinase kinase 4
Gm46605 17 12264156 to 12270856 6700 + lncRNA gene predicted gene, 46605
D17Jcs66 17 12274244 to 12274424 180 DNA segment DNA segment, Chr 17, John C. Schimenti 66
Tssr146417 17 12276389 to 12276391 2 - TSS region transcription start site region 146417
Gm49962 17 12280117 to 12280534 417 + pseudogene predicted gene, 49962
Gm24794 17 12301036 to 12301175 139 + snoRNA gene predicted gene, 24794
Cpgi8611 17 12318008 to 12319137 1129 CpG island CpG island 8611
Tssr142595 17 12318069 to 12318074 5 + TSS region transcription start site region 142595
Tssr146418 17 12318672 to 12318684 12 - TSS region transcription start site region 146418
Tssr146419 17 12318704 to 12318713 9 - TSS region transcription start site region 146419
Tssr146420 17 12318767 to 12318803 36 - TSS region transcription start site region 146420
Tssr5005 17 12318807 to 12318815 8 - TSS region transcription start site region 5005
4732491K20Rik 17 12318853 to 12327250 8397 + bidirectional promoter lncRNA gene RIKEN cDNA 4732491K20 gene
Tssr142596 17 12318862 to 12318905 43 + TSS region transcription start site region 142596
Gm49964 17 12319015 to 12320728 1713 - lincRNA gene predicted gene, 49964
Gm6618 17 12356482 to 12357608 1126 + pseudogene predicted gene 6618
Gm41527 17 12359154 to 12370346 11192 - lncRNA gene predicted gene, 41527
Tssr142597 17 12378603 to 12378621 18 + TSS region transcription start site region 142597
tclLub2 17 12378609 to 12675838 297229 heritable phenotypic marker t-complex lethal Lub2
Plg 17 12378609 to 12419384 40775 + protein coding gene plasminogen
Tme 17 12378609 to 13018119 639510 heritable phenotypic marker T-associated maternal effect
Tssr142598 17 12378629 to 12378646 17 + TSS region transcription start site region 142598
Tssr142599 17 12378652 to 12378665 13 + TSS region transcription start site region 142599
Tssr142600 17 12382117 to 12382129 12 + TSS region transcription start site region 142600
Tssr142601 17 12382826 to 12382844 18 + TSS region transcription start site region 142601
Tssr142602 17 12384390 to 12384404 14 + TSS region transcription start site region 142602
Tssr142603 17 12390241 to 12390252 11 + TSS region transcription start site region 142603
Tssr142604 17 12390287 to 12390305 18 + TSS region transcription start site region 142604
Tssr142605 17 12391779 to 12391791 12 + TSS region transcription start site region 142605
Tssr142606 17 12391818 to 12391829 11 + TSS region transcription start site region 142606
Tssr146421 17 12393125 to 12393136 11 - TSS region transcription start site region 146421
Tssr142607 17 12393164 to 12393174 10 + TSS region transcription start site region 142607
Tssr142608 17 12395617 to 12395637 20 + TSS region transcription start site region 142608
Tssr146422 17 12395657 to 12395682 25 - TSS region transcription start site region 146422
Tssr142609 17 12396601 to 12396612 11 + TSS region transcription start site region 142609
Tssr142610 17 12396631 to 12396640 9 + TSS region transcription start site region 142610
Tssr142611 17 12403091 to 12403102 11 + TSS region transcription start site region 142611
Tssr142612 17 12404079 to 12404090 11 + TSS region transcription start site region 142612
Tssr142613 17 12409054 to 12409073 19 + TSS region transcription start site region 142613
Tssr142614 17 12410898 to 12410935 37 + TSS region transcription start site region 142614
D17Mit114 17 12417795 to 12417944 149 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 114
Ceat1 17 12417795 to 26182159 13764364 QTL chronic experimental autoimmune thyroiditis 1
Tssr142615 17 12419031 to 12419046 15 + TSS region transcription start site region 142615
Slc22a3 17 12419972 to 12507704 87732 - protein coding gene solute carrier family 22 (organic cation transporter), member 3
Tssr146423 17 12420451 to 12420456 5 - TSS region transcription start site region 146423
Tssr142616 17 12420928 to 12420933 5 + TSS region transcription start site region 142616
Gm3192 17 12430825 to 12431282 457 - pseudogene predicted gene 3192
Tssr142617 17 12466841 to 12466855 14 + TSS region transcription start site region 142617
C030013G03Rik 17 12466844 to 12479578 12734 + antisense lncRNA gene RIKEN cDNA C030013G03 gene
Cpgi8612 17 12506796 to 12507839 1043 CpG island CpG island 8612
Tssr146424 17 12507096 to 12507107 11 - TSS region transcription start site region 146424
Tssr146425 17 12507172 to 12507187 15 - TSS region transcription start site region 146425
Tssr146426 17 12507355 to 12507360 5 - TSS region transcription start site region 146426
Tssr146427 17 12507361 to 12507379 18 - TSS region transcription start site region 146427
Tssr146428 17 12507396 to 12507408 12 - TSS region transcription start site region 146428
Tssr146429 17 12507722 to 12507727 5 - TSS region transcription start site region 146429
D17Jcs64 17 12509508 to 12509784 276 DNA segment DNA segment, Chr 17, John C. Schimenti 64
Tssr5006 17 12550083 to 12550086 3 + TSS region transcription start site region 5006
Slc22a2 17 12584132 to 12628488 44356 + protein coding gene solute carrier family 22 (organic cation transporter), member 2
Tssr142618 17 12584183 to 12584195 12 + TSS region transcription start site region 142618
Tssr142619 17 12584215 to 12584236 21 + TSS region transcription start site region 142619
Tssr142620 17 12596344 to 12596360 16 + TSS region transcription start site region 142620
Tssr142621 17 12614707 to 12614716 9 + TSS region transcription start site region 142621
Tssr142622 17 12614749 to 12614755 6 + TSS region transcription start site region 142622
Tssr142623 17 12615283 to 12615290 7 + TSS region transcription start site region 142623
Slc22a1 17 12648869 to 12675829 26960 - protein coding gene solute carrier family 22 (organic cation transporter), member 1
Tssr146430 17 12652641 to 12652652 11 - TSS region transcription start site region 146430
Tssr146431 17 12652670 to 12652679 9 - TSS region transcription start site region 146431
Tssr146432 17 12652739 to 12652753 14 - TSS region transcription start site region 146432
Tssr146433 17 12674803 to 12674807 4 - TSS region transcription start site region 146433
Tssr146434 17 12675698 to 12675714 16 - TSS region transcription start site region 146434
Tssr146435 17 12675728 to 12675739 11 - TSS region transcription start site region 146435
Tssr146436 17 12675742 to 12675775 33 - TSS region transcription start site region 146436
Tssr146437 17 12675786 to 12675807 21 - TSS region transcription start site region 146437
Tssr146438 17 12675833 to 12675844 11 - TSS region transcription start site region 146438
D17Jcs63 17 12677353 to 12677526 173 DNA segment DNA segment, Chr 17, John C. Schimenti 63
Igf2r 17 12682406 to 12769664 87258 - protein coding gene insulin-like growth factor 2 receptor
Tssr146439 17 12682815 to 12682820 5 - TSS region transcription start site region 146439
Tssr146440 17 12688558 to 12688565 7 - TSS region transcription start site region 146440
Tssr146441 17 12688769 to 12688774 5 - TSS region transcription start site region 146441
Tssr146442 17 12691981 to 12691986 5 - TSS region transcription start site region 146442
Tssr146443 17 12691996 to 12692012 16 - TSS region transcription start site region 146443
Tssr146444 17 12692018 to 12692021 3 - TSS region transcription start site region 146444
Tssr146445 17 12692036 to 12692044 8 - TSS region transcription start site region 146445
Tssr146446 17 12692047 to 12692067 20 - TSS region transcription start site region 146446
Tssr146447 17 12716019 to 12716031 12 - TSS region transcription start site region 146447
Tssr146448 17 12725397 to 12725421 24 - TSS region transcription start site region 146448
Tssr146449 17 12740578 to 12740608 30 - TSS region transcription start site region 146449
Airn 17 12741311 to 12859884 118573 + antisense lncRNA gene antisense Igf2r RNA
Tssr142624 17 12741339 to 12741350 11 + TSS region transcription start site region 142624
Tssr142625 17 12741360 to 12741384 24 + TSS region transcription start site region 142625
Cpgi8613 17 12741360 to 12742660 1300 CpG island CpG island 8613
Tssr142626 17 12741385 to 12741399 14 + TSS region transcription start site region 142626
Tssr142627 17 12744692 to 12744700 8 + TSS region transcription start site region 142627
Tssr142628 17 12745851 to 12745887 36 + TSS region transcription start site region 142628
Tssr142629 17 12746488 to 12746500 12 + TSS region transcription start site region 142629
Tssr142630 17 12746531 to 12746543 12 + TSS region transcription start site region 142630
Tssr142631 17 12746671 to 12746684 13 + TSS region transcription start site region 142631
Tssr142632 17 12748375 to 12748379 4 + TSS region transcription start site region 142632
Tssr142633 17 12754813 to 12754827 14 + TSS region transcription start site region 142633
Tssr142634 17 12755434 to 12755456 22 + TSS region transcription start site region 142634
Tssr142635 17 12756018 to 12756032 14 + TSS region transcription start site region 142635
Tssr142636 17 12759189 to 12759201 12 + TSS region transcription start site region 142636
Tssr142637 17 12760178 to 12760183 5 + TSS region transcription start site region 142637
Tssr142638 17 12762929 to 12762935 6 + TSS region transcription start site region 142638