Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:10774923-12265095

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pacrg 17 10403009 to 10840191 437182 - protein coding gene PARK2 co-regulated
Gm16169 17 10807716 to 10818826 11110 + lncRNA gene predicted gene 16169
Tssr142580 17 10807827 to 10807841 14 + TSS region transcription start site region 142580
Cpgi8609 17 10839810 to 10841128 1318 CpG island CpG island 8609
Tssr146404 17 10839991 to 10840000 9 - TSS region transcription start site region 146404
Tssr146405 17 10840106 to 10840120 14 - TSS region transcription start site region 146405
Tssr146406 17 10840125 to 10840197 72 - TSS region transcription start site region 146406
Tssr146407 17 10840251 to 10840263 12 - TSS region transcription start site region 146407
Tssr146408 17 10840273 to 10840284 11 - TSS region transcription start site region 146408
Tssr146409 17 10840285 to 10840299 14 - TSS region transcription start site region 146409
Tssr146410 17 10840315 to 10840323 8 - TSS region transcription start site region 146410
Tssr142581 17 10840361 to 10840405 44 + TSS region transcription start site region 142581
Prkn 17 10840384 to 12063361 1222977 + protein coding gene parkin RBR E3 ubiquitin protein ligase
Tssr142582 17 10840422 to 10840437 15 + TSS region transcription start site region 142582
Tssr146411 17 10840565 to 10840585 20 - TSS region transcription start site region 146411
D17Jcs117 17 10855525 to 10855843 318 DNA segment DNA segment, Chr 17, John C. Schimenti 117
Tssr142583 17 10865099 to 10865103 4 + TSS region transcription start site region 142583
Gm3145 17 10898995 to 10899214 219 + pseudogene predicted gene 3145
D17Mit156 17 10987597 to 10987721 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 156
Lfnq4 17 10987597 to 39053168 28065571 QTL lung function QTL 4
D17Jcs75 17 10995515 to 10995719 204 DNA segment DNA segment, Chr 17, John C. Schimenti 75
Flal1 17 11000000 to 8000000 -3000000 QTL fatty liver accumulation QTL 1, females only
Gm28505 17 11082250 to 11089468 7218 - antisense lncRNA gene predicted gene 28505
Gm41526 17 11118480 to 11134237 15757 - lncRNA gene predicted gene, 41526
Gm37402 17 11249344 to 11254343 4999 + unclassified gene predicted gene, 37402
Gm37332 17 11283922 to 11286765 2843 - unclassified gene predicted gene, 37332
Tssr142584 17 11329294 to 11329336 42 + TSS region transcription start site region 142584
Tssr142585 17 11329607 to 11329623 16 + TSS region transcription start site region 142585
D17Dcr31 17 11352350 to 11352449 99 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 31
Tssr146412 17 11385373 to 11385382 9 - TSS region transcription start site region 146412
Tssr146413 17 11385402 to 11385409 7 - TSS region transcription start site region 146413
D17Jcs72 17 11519923 to 11520095 172 DNA segment DNA segment, Chr 17, John C. Schimenti 72
Gm28118 17 11545505 to 11545798 293 - pseudogene predicted gene 28118
Gm41525 17 11647900 to 11672949 25049 - lncRNA gene predicted gene, 41525
Gm10513 17 11725878 to 11732345 6467 - unclassified non-coding RNA gene predicted gene 10513
D17Jcs70 17 11775898 to 11776230 332 DNA segment DNA segment, Chr 17, John C. Schimenti 70
Tssr146414 17 11861190 to 11861192 2 - TSS region transcription start site region 146414
D17Ertd648e 17 11863070 to 11883189 20119 - lncRNA gene DNA segment, Chr 17, ERATO Doi 648, expressed
Gm46604 17 11959483 to 12031404 71921 - lncRNA gene predicted gene, 46604
Tssr146415 17 11973534 to 11973580 46 - TSS region transcription start site region 146415
D17Mit113 17 11979442 to 11979566 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 113
Obrq13 17 11979442 to 24857795 12878353 QTL obesity resistance QTL 13
Circp2 17 11979442 to 11979566 124 QTL circadian photosensitivity 2
Nrq1a 17 11979442 to 11979566 124 QTL noise-induced hearing loss resistant QTL 1a
Nrq1 17 11979442 to 11979566 124 QTL noise-induced hearing loss resistant QTL 1
Tssr142586 17 12044708 to 12044719 11 + TSS region transcription start site region 142586
D17Mit245 17 12067324 to 12067523 199 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 245
Stheal11 17 12067324 to 83054339 70987015 QTL soft tissue heal 11
Tssr142587 17 12092710 to 12092711 1 + TSS region transcription start site region 142587
Tssr146416 17 12108053 to 12108061 8 - TSS region transcription start site region 146416
Agpat4 17 12118709 to 12219649 100940 + protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
Cpgi8610 17 12118840 to 12119053 213 CpG island CpG island 8610
Tssr142588 17 12119154 to 12119180 26 + TSS region transcription start site region 142588
Tssr142589 17 12119251 to 12119265 14 + TSS region transcription start site region 142589
Tssr142590 17 12119274 to 12119348 74 + TSS region transcription start site region 142590
Tssr142591 17 12119350 to 12119361 11 + TSS region transcription start site region 142591
Tssr142592 17 12119365 to 12119377 12 + TSS region transcription start site region 142592
D17Jcs67 17 12150749 to 12150937 188 DNA segment DNA segment, Chr 17, John C. Schimenti 67
Tssr142593 17 12151705 to 12151723 18 + TSS region transcription start site region 142593
Tssr5004 17 12165846 to 12165850 4 + TSS region transcription start site region 5004
Tdgf1-ps2 17 12189910 to 12190445 535 + pseudogene teratocarcinoma-derived growth factor, pseudogene 2
Tssr142594 17 12195366 to 12195371 5 + TSS region transcription start site region 142594
Map3k4 17 12227621 to 12318796 91175 - protein coding gene mitogen-activated protein kinase kinase kinase 4
Gm46605 17 12264156 to 12270856 6700 + lncRNA gene predicted gene, 46605