Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:9875238-10685240

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Grin2a 16 9577039 to 9996500 419461 - protein coding gene glutamate receptor, ionotropic, NMDA2A (epsilon 1)
Tssr139888 16 9895029 to 9895043 14 - TSS region transcription start site region 139888
D16Mit183 16 9916544 to 9916658 114 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 183
Tssr139889 16 9919755 to 9919768 13 - TSS region transcription start site region 139889
Tssr139890 16 9919798 to 9919810 12 - TSS region transcription start site region 139890
Tssr139891 16 9921156 to 9921174 18 - TSS region transcription start site region 139891
2900045O03Rik 16 9935229 to 9935829 600 unclassified non-coding RNA gene RIKEN cDNA 2900045O03 gene
D16Mit33 16 9945538 to 9945663 125 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 33
Tssr139892 16 9967454 to 9967465 11 - TSS region transcription start site region 139892
Tssr4788 16 9967489 to 9967501 12 - TSS region transcription start site region 4788
Cpgi7945 16 9992195 to 9996027 3832 CpG island CpG island 7945
Tssr139893 16 9994547 to 9994567 20 - TSS region transcription start site region 139893
Tssr139894 16 9995000 to 9995012 12 - TSS region transcription start site region 139894
Tssr139895 16 9995044 to 9995088 44 - TSS region transcription start site region 139895
Tssr139896 16 9995299 to 9995304 5 - TSS region transcription start site region 139896
Tssr139897 16 9995315 to 9995343 28 - TSS region transcription start site region 139897
Tssr139898 16 9995348 to 9995372 24 - TSS region transcription start site region 139898
Tssr139899 16 9995378 to 9995400 22 - TSS region transcription start site region 139899
Tssr139900 16 9995412 to 9995443 31 - TSS region transcription start site region 139900
Tssr139901 16 9995508 to 9995519 11 - TSS region transcription start site region 139901
Tssr139902 16 9995526 to 9995549 23 - TSS region transcription start site region 139902
Tssr139903 16 9995562 to 9995581 19 - TSS region transcription start site region 139903
Tssr139904 16 9995628 to 9995669 41 - TSS region transcription start site region 139904
Tssr139905 16 9995701 to 9995725 24 - TSS region transcription start site region 139905
Tssr139906 16 9995806 to 9995818 12 - TSS region transcription start site region 139906
Gm30668 16 10005988 to 9997209 -8779 - lncRNA gene predicted gene, 30668
Gm7572 16 10044965 to 10045730 765 + pseudogene predicted gene 7572
Gm3890 16 10045759 to 10045965 206 - pseudogene predicted gene 3890
Tssr139907 16 10128534 to 10128554 20 - TSS region transcription start site region 139907
Cpgi7946 16 10170071 to 10170331 260 CpG island CpG island 7946
Tssr137020 16 10170216 to 10170227 11 + TSS region transcription start site region 137020
Rpl39l 16 10170226 to 10174911 4685 + protein coding gene ribosomal protein L39-like
Tssr137021 16 10170228 to 10170263 35 + TSS region transcription start site region 137021
Gm49455 16 10186293 to 10227524 41231 - antisense lncRNA gene predicted gene, 49455
Atf7ip2 16 10192638 to 10249669 57031 + protein coding gene activating transcription factor 7 interacting protein 2
Cpgi7947 16 10192703 to 10193479 776 CpG island CpG island 7947
Tssr4789 16 10192876 to 10192883 7 + TSS region transcription start site region 4789
Tssr137022 16 10192910 to 10192927 17 + TSS region transcription start site region 137022
Gm24667 16 10237918 to 10238020 102 + snRNA gene predicted gene, 24667
Gm49456 16 10238166 to 10238516 350 + pseudogene predicted gene, 49456
Gm22932 16 10273750 to 10273821 71 + miRNA gene predicted gene, 22932
2310063J23Rik 16 10276946 to 10277121 175 unclassified gene RIKEN cDNA 2310063J23 gene
Tssr139908 16 10280238 to 10280240 2 - TSS region transcription start site region 139908
Emp2 16 10281749 to 10313968 32219 - protein coding gene epithelial membrane protein 2
Tssr4790 16 10284335 to 10284356 21 - TSS region transcription start site region 4790
Tssr139909 16 10292358 to 10292381 23 - TSS region transcription start site region 139909
Tssr139910 16 10294452 to 10294462 10 - TSS region transcription start site region 139910
Tssr139911 16 10297143 to 10297148 5 - TSS region transcription start site region 139911
Cpgi7948 16 10313327 to 10314193 866 CpG island CpG island 7948
Tssr139912 16 10313836 to 10313851 15 - TSS region transcription start site region 139912
Tssr139913 16 10313862 to 10313899 37 - TSS region transcription start site region 139913
Tssr139914 16 10313900 to 10313907 7 - TSS region transcription start site region 139914
Tssr139915 16 10313912 to 10313919 7 - TSS region transcription start site region 139915
Tssr139916 16 10313922 to 10313936 14 - TSS region transcription start site region 139916
Tssr139917 16 10313940 to 10313953 13 - TSS region transcription start site region 139917
Gm1600 16 10324105 to 10331285 7180 - lincRNA gene predicted gene 1600
Tssr139918 16 10347569 to 10347613 44 - TSS region transcription start site region 139918
Gm30724 16 10349642 to 10353405 3763 + lncRNA gene predicted gene, 30724
Tekt5 16 10357952 to 10395465 37513 - protein coding gene tektin 5
Cpgi7949 16 10358072 to 10358435 363 CpG island CpG island 7949
D16Mit206 16 10366515 to 10366651 136 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-206
Gm41419 16 10371350 to 10378934 7584 + lncRNA gene predicted gene, 41419
Tssr139919 16 10384063 to 10384092 29 - TSS region transcription start site region 139919
Cpgi7950 16 10394900 to 10395393 493 CpG island CpG island 7950
Tssr139920 16 10395268 to 10395339 71 - TSS region transcription start site region 139920
Tssr139921 16 10395438 to 10395460 22 - TSS region transcription start site region 139921
Tssr139922 16 10395476 to 10395483 7 - TSS region transcription start site region 139922
Cpgi7951 16 10411783 to 10412314 531 CpG island CpG island 7951
Tssr137023 16 10411928 to 10411965 37 + TSS region transcription start site region 137023
Nubp1 16 10411948 to 10424428 12480 + protein coding gene nucleotide binding protein 1
Tvp23a 16 10420557 to 10447362 26805 - protein coding gene trans-golgi network vesicle protein 23A
Tssr139923 16 10447319 to 10447331 12 - TSS region transcription start site region 139923
Tssr139924 16 10447340 to 10447369 29 - TSS region transcription start site region 139924
Tssr139925 16 10447371 to 10447389 18 - TSS region transcription start site region 139925
Tssr137024 16 10447412 to 10447450 38 + TSS region transcription start site region 137024
Tssr137025 16 10452813 to 10452838 25 + TSS region transcription start site region 137025
Gm41420 16 10470794 to 10473103 2309 + lncRNA gene predicted gene, 41420
Tssr137026 16 10479921 to 10479940 19 + TSS region transcription start site region 137026
Ciita 16 10480059 to 10528418 48359 + protein coding gene class II transactivator
Tssr137027 16 10480065 to 10480080 15 + TSS region transcription start site region 137027
Tssr137028 16 10480120 to 10480121 1 + TSS region transcription start site region 137028
Tssr137029 16 10480131 to 10480134 3 + TSS region transcription start site region 137029
Tssr137030 16 10480148 to 10480153 5 + TSS region transcription start site region 137030
Tssr137031 16 10484138 to 10484166 28 + TSS region transcription start site region 137031
Tssr137032 16 10488175 to 10488204 29 + TSS region transcription start site region 137032
Tssr137033 16 10488213 to 10488253 40 + TSS region transcription start site region 137033
Tssr137034 16 10489728 to 10489757 29 + TSS region transcription start site region 137034
Tssr137035 16 10489759 to 10489804 45 + TSS region transcription start site region 137035
Tssr137036 16 10489806 to 10489827 21 + TSS region transcription start site region 137036
Dexi 16 10502531 to 10543054 40523 - protein coding gene dexamethasone-induced transcript
Cpgi7952 16 10511051 to 10511294 243 CpG island CpG island 7952
Tssr137037 16 10526331 to 10526343 12 + TSS region transcription start site region 137037
Tssr137038 16 10526361 to 10526373 12 + TSS region transcription start site region 137038
Tssr137039 16 10526429 to 10526440 11 + TSS region transcription start site region 137039
Tssr137040 16 10526464 to 10526468 4 + TSS region transcription start site region 137040
Tssr137041 16 10536856 to 10536860 4 + TSS region transcription start site region 137041
Cpgi7953 16 10542212 to 10543296 1084 CpG island CpG island 7953
Tssr139926 16 10543028 to 10543096 68 - TSS region transcription start site region 139926
Cpgi7954 16 10544901 to 10546130 1229 CpG island CpG island 7954
Clec16a 16 10545339 to 10744878 199539 + protein coding gene C-type lectin domain family 16, member A
Tssr137042 16 10545340 to 10545351 11 + TSS region transcription start site region 137042
Tssr137043 16 10545358 to 10545388 30 + TSS region transcription start site region 137043
Tssr137044 16 10545390 to 10545427 37 + TSS region transcription start site region 137044
Tssr137045 16 10545428 to 10545454 26 + TSS region transcription start site region 137045
D16Mit161 16 10562439 to 10562558 119 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 161
Tssr139927 16 10668575 to 10668594 19 - TSS region transcription start site region 139927
Gm15558 16 10669248 to 10683539 14291 - antisense lncRNA gene predicted gene 15558
Tssr139928 16 10683284 to 10683295 11 - TSS region transcription start site region 139928
Tssr139929 16 10683318 to 10683356 38 - TSS region transcription start site region 139929
Tssr139930 16 10683533 to 10683544 11 - TSS region transcription start site region 139930
Tssr139931 16 10683554 to 10683563 9 - TSS region transcription start site region 139931
Tssr139932 16 10683583 to 10683596 13 - TSS region transcription start site region 139932
Tssr139933 16 10683624 to 10683633 9 - TSS region transcription start site region 139933