Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:97611231-98264391

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro33 16 32312022 to 97830295 65518273 heritable phenotypic marker reproductive mutant 33, JAX Reproductive Mutagenesis Program
Cpgi8533 16 97610306 to 97611362 1056 CpG island CpG island 8533
Tssr142329 16 97659526 to 97659540 14 - TSS region transcription start site region 142329
Gm41512 16 97660762 to 97670707 9945 - lncRNA gene predicted gene, 41512
Tssr139714 16 97715182 to 97715186 4 + TSS region transcription start site region 139714
Gm41513 16 97724176 to 97730186 6010 - lncRNA gene predicted gene, 41513
Tssr142330 16 97734807 to 97734839 32 - TSS region transcription start site region 142330
Tssr139715 16 97734923 to 97734934 11 + TSS region transcription start site region 139715
Ripk4 16 97741933 to 97763755 21822 - protein coding gene receptor-interacting serine-threonine kinase 4
Tssr139716 16 97745789 to 97745816 27 + TSS region transcription start site region 139716
D16Jhu79 16 97753873 to 97754246 373 DNA segment DNA segment, Chr 16, Johns Hopkins University 79
Cpgi8534 16 97763039 to 97764127 1088 CpG island CpG island 8534
Tssr142331 16 97763421 to 97763426 5 - TSS region transcription start site region 142331
Tssr142332 16 97763449 to 97763472 23 - TSS region transcription start site region 142332
Tssr142333 16 97763712 to 97763780 68 - TSS region transcription start site region 142333
Prdm15 16 97791467 to 97851850 60383 - protein coding gene PR domain containing 15
Gm49592 16 97801128 to 97801355 227 + pseudogene predicted gene, 49592
D16Mit106 16 97830150 to 97830295 145 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 106
D16Jhu80 16 97848600 to 97848927 327 DNA segment DNA segment, Chr 16, Johns Hopkins University 80
Cpgi8535 16 97850839 to 97852133 1294 CpG island CpG island 8535
Tssr142334 16 97851775 to 97851788 13 - TSS region transcription start site region 142334
Tssr142335 16 97851796 to 97851853 57 - TSS region transcription start site region 142335
C2cd2 16 97855209 to 97922651 67442 - protein coding gene C2 calcium-dependent domain containing 2
Mir6964 16 97877233 to 97877291 58 - miRNA gene microRNA 6964
Cpgi8536 16 97921833 to 97923034 1201 CpG island CpG island 8536
Tssr142336 16 97922554 to 97922580 26 - TSS region transcription start site region 142336
Tssr142337 16 97922582 to 97922613 31 - TSS region transcription start site region 142337
D16Jhu81 16 97930575 to 97930754 179 DNA segment DNA segment, Chr 16, Johns Hopkins University 81
Gm41514 16 97936231 to 97939391 3160 - lncRNA gene predicted gene, 41514
Zbtb21 16 97945793 to 97962623 16830 - protein coding gene zinc finger and BTB domain containing 21
Tssr4979 16 97948672 to 97948689 17 - TSS region transcription start site region 4979
Cpgi8537 16 97961623 to 97962975 1352 CpG island CpG island 8537
Tssr142338 16 97962186 to 97962198 12 - TSS region transcription start site region 142338
Tssr142339 16 97962205 to 97962276 71 - TSS region transcription start site region 142339
Tssr142340 16 97962581 to 97962636 55 - TSS region transcription start site region 142340
Tssr142341 16 97965203 to 97965207 4 - TSS region transcription start site region 142341
C030010L15Rik 16 97994596 to 97997419 2823 - antisense lncRNA gene RIKEN cDNA C030010L15 gene
Tssr139717 16 97995019 to 97995021 2 + TSS region transcription start site region 139717
Tssr142342 16 97996972 to 97996990 18 - TSS region transcription start site region 142342
Cpgi8538 16 97997144 to 97997421 277 CpG island CpG island 8538
Tssr142343 16 97997214 to 97997226 12 - TSS region transcription start site region 142343
Tssr139718 16 97997313 to 97997362 49 + TSS region transcription start site region 139718
B230307C23Rik 16 97997347 to 98016756 19409 + protein coding gene RIKEN cDNA B230307C23 gene
Vmn2r-ps112 16 98030140 to 98030460 320 + pseudogene vomeronasal 2, receptor, pseudogene 112
A630089N07Rik 16 98062512 to 98082439 19927 - lncRNA gene RIKEN cDNA A630089N07 gene
Cpgi8539 16 98081975 to 98082357 382 CpG island CpG island 8539
Tssr142344 16 98081981 to 98082012 31 - TSS region transcription start site region 142344
Tssr142345 16 98082432 to 98082439 7 - TSS region transcription start site region 142345