Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:96499119-97509121

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 cytogenetic marker deletion, Chr16, R H Reeves 1
Dp(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 chromosomal duplication duplication, Chr 16, H R Reeves 1
Gm49948 16 96361794 to 96525580 163786 + protein coding gene predicted gene, 49948
Pcp4 16 96467606 to 96525789 58183 + protein coding gene Purkinje cell protein 4
Tssr139674 16 96499241 to 96499251 10 + TSS region transcription start site region 139674
Tssr139675 16 96499476 to 96499485 9 + TSS region transcription start site region 139675
D16Jhu65 16 96505790 to 96506022 232 DNA segment DNA segment, Chr 16, Johns Hopkins University 65
Tssr139676 16 96525390 to 96525401 11 + TSS region transcription start site region 139676
Tssr139677 16 96525405 to 96525455 50 + TSS region transcription start site region 139677
Tssr139678 16 96525499 to 96525563 64 + TSS region transcription start site region 139678
Tssr139679 16 96525598 to 96525609 11 + TSS region transcription start site region 139679
Tssr139680 16 96531286 to 96531314 28 + TSS region transcription start site region 139680
Tssr139681 16 96569050 to 96569053 3 + TSS region transcription start site region 139681
Dscam 16 96590840 to 97170752 579912 - protein coding gene DS cell adhesion molecule
Gm49907 16 96634370 to 96648952 14582 + antisense lncRNA gene predicted gene, 49907
Cpgi8527 16 96643662 to 96643937 275 CpG island CpG island 8527
D16Jhu66 16 96655650 to 96655872 222 DNA segment DNA segment, Chr 16, Johns Hopkins University 66
Cpgi8528 16 96673585 to 96673787 202 CpG island CpG island 8528
Tssr142298 16 96702788 to 96702794 6 - TSS region transcription start site region 142298
Gm32509 16 96720217 to 96768130 47913 + lncRNA gene predicted gene, 32509
D16Jhu67 16 96721928 to 96722096 168 DNA segment DNA segment, Chr 16, Johns Hopkins University 67
Tssr142299 16 96762804 to 96762808 4 - TSS region transcription start site region 142299
Cpgi8529 16 96819784 to 96819962 178 CpG island CpG island 8529
Cpgi8530 16 96820688 to 96821013 325 CpG island CpG island 8530
D16Jhu68 16 96845642 to 96845852 210 DNA segment DNA segment, Chr 16, Johns Hopkins University 68
D16Jhu69 16 96858314 to 96858613 299 DNA segment DNA segment, Chr 16, Johns Hopkins University 69
D16Jhu70 16 96874364 to 96874577 213 DNA segment DNA segment, Chr 16, Johns Hopkins University 70
D16Mit71 16 96913248 to 96913401 153 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 71
Gm32432 16 96919370 to 96921130 1760 + antisense lncRNA gene predicted gene, 32432
D16Jhu71 16 96961689 to 96961926 237 DNA segment DNA segment, Chr 16, Johns Hopkins University 71
Tssr142300 16 96968933 to 96968935 2 - TSS region transcription start site region 142300
Tssr142301 16 96980131 to 96980135 4 - TSS region transcription start site region 142301
Tssr4977 16 97004119 to 97004121 2 + TSS region transcription start site region 4977
Cpgi8531 16 97169889 to 97171113 1224 CpG island CpG island 8531
Tssr142302 16 97170528 to 97170544 16 - TSS region transcription start site region 142302
Tssr142303 16 97170707 to 97170759 52 - TSS region transcription start site region 142303
Tssr142304 16 97170795 to 97170814 19 - TSS region transcription start site region 142304
Tssr142305 16 97170821 to 97170836 15 - TSS region transcription start site region 142305
Tssr142306 16 97170905 to 97170945 40 - TSS region transcription start site region 142306
Tssr142307 16 97171065 to 97171103 38 - TSS region transcription start site region 142307
D16Jhu72 16 97219244 to 97219415 171 DNA segment DNA segment, Chr 16, Johns Hopkins University 72
D16Jhu73 16 97339324 to 97339632 308 DNA segment DNA segment, Chr 16, Johns Hopkins University 73
G370062D05Rik 16 97355763 to 97357932 2169 unclassified non-coding RNA gene RIKEN cDNA G370062D05 gene
Cpgi8532 16 97356394 to 97357410 1016 CpG island CpG island 8532
Tssr139682 16 97356721 to 97356732 11 + TSS region transcription start site region 139682
Bace2 16 97356728 to 97439012 82284 + protein coding gene beta-site APP-cleaving enzyme 2
Tssr139683 16 97356734 to 97356798 64 + TSS region transcription start site region 139683
Tssr139684 16 97356876 to 97356886 10 + TSS region transcription start site region 139684
Tssr139685 16 97391336 to 97391342 6 + TSS region transcription start site region 139685
D16Jhu75 16 97393319 to 97393709 390 DNA segment DNA segment, Chr 16, Johns Hopkins University 75
D16Mit205 16 97404657 to 97404799 142 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 205
Gm49681 16 97405269 to 97405631 362 + pseudogene predicted gene, 49681
Tssr4978 16 97423703 to 97423704 1 + TSS region transcription start site region 4978
Mx1 16 97447035 to 97462906 15871 - protein coding gene MX dynamin-like GTPase 1
Tssr142308 16 97447660 to 97447664 4 - TSS region transcription start site region 142308
Tssr142309 16 97450405 to 97450419 14 - TSS region transcription start site region 142309
Tssr142310 16 97452868 to 97452878 10 - TSS region transcription start site region 142310
Tssr142311 16 97454015 to 97454030 15 - TSS region transcription start site region 142311
Tssr142312 16 97454210 to 97454224 14 - TSS region transcription start site region 142312
Tssr142313 16 97454242 to 97454254 12 - TSS region transcription start site region 142313
Tssr142314 16 97458981 to 97458991 10 - TSS region transcription start site region 142314
Tssr142315 16 97459162 to 97459174 12 - TSS region transcription start site region 142315
Tssr142316 16 97459508 to 97459531 23 - TSS region transcription start site region 142316
Tssr142317 16 97459597 to 97459621 24 - TSS region transcription start site region 142317
Tssr142318 16 97459847 to 97459861 14 - TSS region transcription start site region 142318
Tssr142319 16 97459881 to 97459899 18 - TSS region transcription start site region 142319
Tssr142320 16 97460481 to 97460491 10 - TSS region transcription start site region 142320
Tssr142321 16 97461480 to 97461502 22 - TSS region transcription start site region 142321
Tssr142322 16 97462903 to 97462908 5 - TSS region transcription start site region 142322
2210009P08Rik 16 97466484 to 97466948 464 - unclassified gene RIKEN cDNA 2210009P08 gene
Fam3b 16 97471086 to 97504936 33850 - protein coding gene family with sequence similarity 3, member B
Tssr142323 16 97478739 to 97478750 11 - TSS region transcription start site region 142323
Tssr139686 16 97489994 to 97489998 4 + TSS region transcription start site region 139686
Gm9242 16 97490041 to 97490910 869 + pseudogene predicted pseudogene 9242
Gm24777 16 97498916 to 97499022 106 - rRNA gene predicted gene, 24777
Tssr142324 16 97504892 to 97504915 23 - TSS region transcription start site region 142324
Tssr142325 16 97504925 to 97504943 18 - TSS region transcription start site region 142325