Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:96340642-97350852

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41510 16 96352081 to 96355027 2946 + lncRNA gene predicted gene, 41510
Cpgi8526 16 96357950 to 96358136 186 CpG island CpG island 8526
Tssr139657 16 96361654 to 96361665 11 + TSS region transcription start site region 139657
Igsf5 16 96361668 to 96422121 60453 + protein coding gene immunoglobulin superfamily, member 5
Tssr139658 16 96361711 to 96361722 11 + TSS region transcription start site region 139658
Tssr139659 16 96361728 to 96361740 12 + TSS region transcription start site region 139659
Tssr139660 16 96361749 to 96361801 52 + TSS region transcription start site region 139660
Gm49948 16 96361794 to 96525580 163786 + protein coding gene predicted gene, 49948
Tssr139661 16 96361805 to 96361816 11 + TSS region transcription start site region 139661
Tssr142292 16 96372420 to 96372427 7 - TSS region transcription start site region 142292
Tssr139662 16 96372576 to 96372583 7 + TSS region transcription start site region 139662
Tssr139663 16 96372658 to 96372672 14 + TSS region transcription start site region 139663
Tssr139664 16 96372685 to 96372708 23 + TSS region transcription start site region 139664
Tssr139665 16 96372709 to 96372723 14 + TSS region transcription start site region 139665
Tssr139666 16 96372839 to 96372853 14 + TSS region transcription start site region 139666
Tssr139667 16 96372883 to 96372905 22 + TSS region transcription start site region 139667
Tssr139668 16 96383898 to 96383910 12 + TSS region transcription start site region 139668
D16Jhu63 16 96386026 to 96386253 227 DNA segment DNA segment, Chr 16, Johns Hopkins University 63
Tssr139669 16 96386324 to 96386344 20 + TSS region transcription start site region 139669
Tssr139670 16 96386390 to 96386400 10 + TSS region transcription start site region 139670
Tssr142293 16 96419213 to 96419214 1 - TSS region transcription start site region 142293
Itgb2l 16 96422295 to 96443626 21331 - protein coding gene integrin beta 2-like
D16Jhu64 16 96424962 to 96425329 367 DNA segment DNA segment, Chr 16, Johns Hopkins University 64
Tssr4975 16 96434580 to 96434585 5 - TSS region transcription start site region 4975
Tssr142294 16 96439637 to 96439640 3 - TSS region transcription start site region 142294
Tssr139671 16 96441226 to 96441240 14 + TSS region transcription start site region 139671
Tssr142295 16 96441664 to 96441669 5 - TSS region transcription start site region 142295
Tssr142296 16 96443595 to 96443641 46 - TSS region transcription start site region 142296
Tssr142297 16 96443665 to 96443676 11 - TSS region transcription start site region 142297
Tssr4976 16 96443710 to 96443735 25 + TSS region transcription start site region 4976
Gm32358 16 96444714 to 96447103 2389 + lncRNA gene predicted gene, 32358
Pcp4 16 96467606 to 96525789 58183 + protein coding gene Purkinje cell protein 4
Tssr139672 16 96467709 to 96467725 16 + TSS region transcription start site region 139672
Tssr139673 16 96493811 to 96493832 21 + TSS region transcription start site region 139673
Tssr139674 16 96499241 to 96499251 10 + TSS region transcription start site region 139674
Tssr139675 16 96499476 to 96499485 9 + TSS region transcription start site region 139675
D16Jhu65 16 96505790 to 96506022 232 DNA segment DNA segment, Chr 16, Johns Hopkins University 65
Tssr139676 16 96525390 to 96525401 11 + TSS region transcription start site region 139676
Tssr139677 16 96525405 to 96525455 50 + TSS region transcription start site region 139677
Tssr139678 16 96525499 to 96525563 64 + TSS region transcription start site region 139678
Tssr139679 16 96525598 to 96525609 11 + TSS region transcription start site region 139679
Tssr139680 16 96531286 to 96531314 28 + TSS region transcription start site region 139680
Tssr139681 16 96569050 to 96569053 3 + TSS region transcription start site region 139681
Dscam 16 96590840 to 97170752 579912 - protein coding gene DS cell adhesion molecule
Gm49907 16 96634370 to 96648952 14582 + antisense lncRNA gene predicted gene, 49907
Cpgi8527 16 96643662 to 96643937 275 CpG island CpG island 8527
D16Jhu66 16 96655650 to 96655872 222 DNA segment DNA segment, Chr 16, Johns Hopkins University 66
Cpgi8528 16 96673585 to 96673787 202 CpG island CpG island 8528
Tssr142298 16 96702788 to 96702794 6 - TSS region transcription start site region 142298
Gm32509 16 96720217 to 96768130 47913 + lncRNA gene predicted gene, 32509
D16Jhu67 16 96721928 to 96722096 168 DNA segment DNA segment, Chr 16, Johns Hopkins University 67
Tssr142299 16 96762804 to 96762808 4 - TSS region transcription start site region 142299
Cpgi8529 16 96819784 to 96819962 178 CpG island CpG island 8529
Cpgi8530 16 96820688 to 96821013 325 CpG island CpG island 8530
D16Jhu68 16 96845642 to 96845852 210 DNA segment DNA segment, Chr 16, Johns Hopkins University 68
D16Jhu69 16 96858314 to 96858613 299 DNA segment DNA segment, Chr 16, Johns Hopkins University 69
D16Jhu70 16 96874364 to 96874577 213 DNA segment DNA segment, Chr 16, Johns Hopkins University 70
D16Mit71 16 96913248 to 96913401 153 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 71
Gm32432 16 96919370 to 96921130 1760 + antisense lncRNA gene predicted gene, 32432
D16Jhu71 16 96961689 to 96961926 237 DNA segment DNA segment, Chr 16, Johns Hopkins University 71
Tssr142300 16 96968933 to 96968935 2 - TSS region transcription start site region 142300
Tssr142301 16 96980131 to 96980135 4 - TSS region transcription start site region 142301
Tssr4977 16 97004119 to 97004121 2 + TSS region transcription start site region 4977
Cpgi8531 16 97169889 to 97171113 1224 CpG island CpG island 8531
Tssr142302 16 97170528 to 97170544 16 - TSS region transcription start site region 142302
Tssr142303 16 97170707 to 97170759 52 - TSS region transcription start site region 142303
Tssr142304 16 97170795 to 97170814 19 - TSS region transcription start site region 142304
Tssr142305 16 97170821 to 97170836 15 - TSS region transcription start site region 142305
Tssr142306 16 97170905 to 97170945 40 - TSS region transcription start site region 142306
Tssr142307 16 97171065 to 97171103 38 - TSS region transcription start site region 142307
D16Jhu72 16 97219244 to 97219415 171 DNA segment DNA segment, Chr 16, Johns Hopkins University 72
D16Jhu73 16 97339324 to 97339632 308 DNA segment DNA segment, Chr 16, Johns Hopkins University 73