Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:96309119-97699121

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 cytogenetic marker deletion, Chr16, R H Reeves 1
Dp(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 chromosomal duplication duplication, Chr 16, H R Reeves 1
B3galt5 16 96235801 to 96319859 84058 + protein coding gene UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
Tssr139655 16 96313725 to 96313727 2 + TSS region transcription start site region 139655
Cpgi8525 16 96315332 to 96315632 300 CpG island CpG island 8525
Tssr139656 16 96330065 to 96330068 3 + TSS region transcription start site region 139656
Gm41510 16 96352081 to 96355027 2946 + lncRNA gene predicted gene, 41510
Cpgi8526 16 96357950 to 96358136 186 CpG island CpG island 8526
Tssr139657 16 96361654 to 96361665 11 + TSS region transcription start site region 139657
Igsf5 16 96361668 to 96422121 60453 + protein coding gene immunoglobulin superfamily, member 5
Tssr139658 16 96361711 to 96361722 11 + TSS region transcription start site region 139658
Tssr139659 16 96361728 to 96361740 12 + TSS region transcription start site region 139659
Tssr139660 16 96361749 to 96361801 52 + TSS region transcription start site region 139660
Gm49948 16 96361794 to 96525580 163786 + protein coding gene predicted gene, 49948
Tssr139661 16 96361805 to 96361816 11 + TSS region transcription start site region 139661
Tssr142292 16 96372420 to 96372427 7 - TSS region transcription start site region 142292
Tssr139662 16 96372576 to 96372583 7 + TSS region transcription start site region 139662
Tssr139663 16 96372658 to 96372672 14 + TSS region transcription start site region 139663
Tssr139664 16 96372685 to 96372708 23 + TSS region transcription start site region 139664
Tssr139665 16 96372709 to 96372723 14 + TSS region transcription start site region 139665
Tssr139666 16 96372839 to 96372853 14 + TSS region transcription start site region 139666
Tssr139667 16 96372883 to 96372905 22 + TSS region transcription start site region 139667
Tssr139668 16 96383898 to 96383910 12 + TSS region transcription start site region 139668
D16Jhu63 16 96386026 to 96386253 227 DNA segment DNA segment, Chr 16, Johns Hopkins University 63
Tssr139669 16 96386324 to 96386344 20 + TSS region transcription start site region 139669
Tssr139670 16 96386390 to 96386400 10 + TSS region transcription start site region 139670
Tssr142293 16 96419213 to 96419214 1 - TSS region transcription start site region 142293
Itgb2l 16 96422295 to 96443626 21331 - protein coding gene integrin beta 2-like
D16Jhu64 16 96424962 to 96425329 367 DNA segment DNA segment, Chr 16, Johns Hopkins University 64
Tssr4975 16 96434580 to 96434585 5 - TSS region transcription start site region 4975
Tssr142294 16 96439637 to 96439640 3 - TSS region transcription start site region 142294
Tssr139671 16 96441226 to 96441240 14 + TSS region transcription start site region 139671
Tssr142295 16 96441664 to 96441669 5 - TSS region transcription start site region 142295
Tssr142296 16 96443595 to 96443641 46 - TSS region transcription start site region 142296
Tssr142297 16 96443665 to 96443676 11 - TSS region transcription start site region 142297
Tssr4976 16 96443710 to 96443735 25 + TSS region transcription start site region 4976
Gm32358 16 96444714 to 96447103 2389 + lncRNA gene predicted gene, 32358
Pcp4 16 96467606 to 96525789 58183 + protein coding gene Purkinje cell protein 4
Tssr139672 16 96467709 to 96467725 16 + TSS region transcription start site region 139672
Tssr139673 16 96493811 to 96493832 21 + TSS region transcription start site region 139673
Tssr139674 16 96499241 to 96499251 10 + TSS region transcription start site region 139674
Tssr139675 16 96499476 to 96499485 9 + TSS region transcription start site region 139675
D16Jhu65 16 96505790 to 96506022 232 DNA segment DNA segment, Chr 16, Johns Hopkins University 65
Tssr139676 16 96525390 to 96525401 11 + TSS region transcription start site region 139676
Tssr139677 16 96525405 to 96525455 50 + TSS region transcription start site region 139677
Tssr139678 16 96525499 to 96525563 64 + TSS region transcription start site region 139678
Tssr139679 16 96525598 to 96525609 11 + TSS region transcription start site region 139679
Tssr139680 16 96531286 to 96531314 28 + TSS region transcription start site region 139680
Tssr139681 16 96569050 to 96569053 3 + TSS region transcription start site region 139681
Dscam 16 96590840 to 97170752 579912 - protein coding gene DS cell adhesion molecule
Gm49907 16 96634370 to 96648952 14582 + antisense lncRNA gene predicted gene, 49907
Cpgi8527 16 96643662 to 96643937 275 CpG island CpG island 8527
D16Jhu66 16 96655650 to 96655872 222 DNA segment DNA segment, Chr 16, Johns Hopkins University 66
Cpgi8528 16 96673585 to 96673787 202 CpG island CpG island 8528
Tssr142298 16 96702788 to 96702794 6 - TSS region transcription start site region 142298
Gm32509 16 96720217 to 96768130 47913 + lncRNA gene predicted gene, 32509
D16Jhu67 16 96721928 to 96722096 168 DNA segment DNA segment, Chr 16, Johns Hopkins University 67
Tssr142299 16 96762804 to 96762808 4 - TSS region transcription start site region 142299
Cpgi8529 16 96819784 to 96819962 178 CpG island CpG island 8529
Cpgi8530 16 96820688 to 96821013 325 CpG island CpG island 8530
D16Jhu68 16 96845642 to 96845852 210 DNA segment DNA segment, Chr 16, Johns Hopkins University 68
D16Jhu69 16 96858314 to 96858613 299 DNA segment DNA segment, Chr 16, Johns Hopkins University 69
D16Jhu70 16 96874364 to 96874577 213 DNA segment DNA segment, Chr 16, Johns Hopkins University 70
D16Mit71 16 96913248 to 96913401 153 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 71
Gm32432 16 96919370 to 96921130 1760 + antisense lncRNA gene predicted gene, 32432
D16Jhu71 16 96961689 to 96961926 237 DNA segment DNA segment, Chr 16, Johns Hopkins University 71
Tssr142300 16 96968933 to 96968935 2 - TSS region transcription start site region 142300
Tssr142301 16 96980131 to 96980135 4 - TSS region transcription start site region 142301
Tssr4977 16 97004119 to 97004121 2 + TSS region transcription start site region 4977
Cpgi8531 16 97169889 to 97171113 1224 CpG island CpG island 8531
Tssr142302 16 97170528 to 97170544 16 - TSS region transcription start site region 142302
Tssr142303 16 97170707 to 97170759 52 - TSS region transcription start site region 142303
Tssr142304 16 97170795 to 97170814 19 - TSS region transcription start site region 142304
Tssr142305 16 97170821 to 97170836 15 - TSS region transcription start site region 142305
Tssr142306 16 97170905 to 97170945 40 - TSS region transcription start site region 142306
Tssr142307 16 97171065 to 97171103 38 - TSS region transcription start site region 142307
D16Jhu72 16 97219244 to 97219415 171 DNA segment DNA segment, Chr 16, Johns Hopkins University 72
D16Jhu73 16 97339324 to 97339632 308 DNA segment DNA segment, Chr 16, Johns Hopkins University 73
G370062D05Rik 16 97355763 to 97357932 2169 unclassified non-coding RNA gene RIKEN cDNA G370062D05 gene
Cpgi8532 16 97356394 to 97357410 1016 CpG island CpG island 8532
Tssr139682 16 97356721 to 97356732 11 + TSS region transcription start site region 139682
Bace2 16 97356728 to 97439012 82284 + protein coding gene beta-site APP-cleaving enzyme 2
Tssr139683 16 97356734 to 97356798 64 + TSS region transcription start site region 139683
Tssr139684 16 97356876 to 97356886 10 + TSS region transcription start site region 139684
Tssr139685 16 97391336 to 97391342 6 + TSS region transcription start site region 139685
D16Jhu75 16 97393319 to 97393709 390 DNA segment DNA segment, Chr 16, Johns Hopkins University 75
D16Mit205 16 97404657 to 97404799 142 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 205
Gm49681 16 97405269 to 97405631 362 + pseudogene predicted gene, 49681
Tssr4978 16 97423703 to 97423704 1 + TSS region transcription start site region 4978
Mx1 16 97447035 to 97462906 15871 - protein coding gene MX dynamin-like GTPase 1
Tssr142308 16 97447660 to 97447664 4 - TSS region transcription start site region 142308
Tssr142309 16 97450405 to 97450419 14 - TSS region transcription start site region 142309
Tssr142310 16 97452868 to 97452878 10 - TSS region transcription start site region 142310
Tssr142311 16 97454015 to 97454030 15 - TSS region transcription start site region 142311
Tssr142312 16 97454210 to 97454224 14 - TSS region transcription start site region 142312
Tssr142313 16 97454242 to 97454254 12 - TSS region transcription start site region 142313
Tssr142314 16 97458981 to 97458991 10 - TSS region transcription start site region 142314
Tssr142315 16 97459162 to 97459174 12 - TSS region transcription start site region 142315
Tssr142316 16 97459508 to 97459531 23 - TSS region transcription start site region 142316
Tssr142317 16 97459597 to 97459621 24 - TSS region transcription start site region 142317
Tssr142318 16 97459847 to 97459861 14 - TSS region transcription start site region 142318
Tssr142319 16 97459881 to 97459899 18 - TSS region transcription start site region 142319
Tssr142320 16 97460481 to 97460491 10 - TSS region transcription start site region 142320
Tssr142321 16 97461480 to 97461502 22 - TSS region transcription start site region 142321
Tssr142322 16 97462903 to 97462908 5 - TSS region transcription start site region 142322
2210009P08Rik 16 97466484 to 97466948 464 - unclassified gene RIKEN cDNA 2210009P08 gene
Fam3b 16 97471086 to 97504936 33850 - protein coding gene family with sequence similarity 3, member B
Tssr142323 16 97478739 to 97478750 11 - TSS region transcription start site region 142323
Tssr139686 16 97489994 to 97489998 4 + TSS region transcription start site region 139686
Gm9242 16 97490041 to 97490910 869 + pseudogene predicted pseudogene 9242
Gm24777 16 97498916 to 97499022 106 - rRNA gene predicted gene, 24777
Tssr142324 16 97504892 to 97504915 23 - TSS region transcription start site region 142324
Tssr142325 16 97504925 to 97504943 18 - TSS region transcription start site region 142325
Tssr139687 16 97511957 to 97511959 2 + TSS region transcription start site region 139687
Tssr142326 16 97514795 to 97514802 7 - TSS region transcription start site region 142326
Tssr142327 16 97514812 to 97514828 16 - TSS region transcription start site region 142327
Tssr139688 16 97535290 to 97535319 29 + TSS region transcription start site region 139688
Tssr139689 16 97536079 to 97536085 6 + TSS region transcription start site region 139689
Mx2 16 97536081 to 97560901 24820 + polymorphic pseudogene MX dynamin-like GTPase 2
Tssr139690 16 97536338 to 97536346 8 + TSS region transcription start site region 139690
Tssr139691 16 97541499 to 97541510 11 + TSS region transcription start site region 139691
Tssr139692 16 97543891 to 97543901 10 + TSS region transcription start site region 139692
Tssr139693 16 97547310 to 97547317 7 + TSS region transcription start site region 139693
Tssr139694 16 97547532 to 97547540 8 + TSS region transcription start site region 139694
Tssr139695 16 97548604 to 97548619 15 + TSS region transcription start site region 139695
Tssr139696 16 97548622 to 97548641 19 + TSS region transcription start site region 139696
Tssr139697 16 97548689 to 97548705 16 + TSS region transcription start site region 139697
Tssr139698 16 97548719 to 97548734 15 + TSS region transcription start site region 139698
Tssr139699 16 97548735 to 97548764 29 + TSS region transcription start site region 139699
Tssr139700 16 97548790 to 97548816 26 + TSS region transcription start site region 139700
Tssr139701 16 97550487 to 97550527 40 + TSS region transcription start site region 139701
Tssr139702 16 97550863 to 97550875 12 + TSS region transcription start site region 139702
Tssr139703 16 97551968 to 97551991 23 + TSS region transcription start site region 139703
Tssr139704 16 97554028 to 97554032 4 + TSS region transcription start site region 139704
Tssr139705 16 97554632 to 97554645 13 + TSS region transcription start site region 139705
Tssr139706 16 97555040 to 97555047 7 + TSS region transcription start site region 139706
Tssr139707 16 97557747 to 97557760 13 + TSS region transcription start site region 139707
Tssr139708 16 97557793 to 97557807 14 + TSS region transcription start site region 139708
Tssr139709 16 97557883 to 97557892 9 + TSS region transcription start site region 139709
Tssr139710 16 97557911 to 97557922 11 + TSS region transcription start site region 139710
Tssr139711 16 97558023 to 97558037 14 + TSS region transcription start site region 139711
Tssr139712 16 97558069 to 97558083 14 + TSS region transcription start site region 139712
Tssr139713 16 97558084 to 97558099 15 + TSS region transcription start site region 139713
Tmprss2 16 97564682 to 97611195 46513 - protein coding gene transmembrane protease, serine 2
D16Jhu76 16 97566499 to 97566930 431 DNA segment DNA segment, Chr 16, Johns Hopkins University 76
D16Jhu77 16 97568312 to 97568473 161 DNA segment DNA segment, Chr 16, Johns Hopkins University 77
Cpgi8533 16 97610306 to 97611362 1056 CpG island CpG island 8533
Tssr142328 16 97611072 to 97611088 16 - TSS region transcription start site region 142328
Tssr142329 16 97659526 to 97659540 14 - TSS region transcription start site region 142329
Gm41512 16 97660762 to 97670707 9945 - lncRNA gene predicted gene, 41512