Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:96217295-96648626

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3bgr 16 96200450 to 96228935 28485 + protein coding gene SH3-binding domain glutamic acid-rich protein
Tssr139645 16 96219480 to 96219495 15 + TSS region transcription start site region 139645
Tssr142291 16 96220529 to 96220559 30 - TSS region transcription start site region 142291
Cpgi8523 16 96235627 to 96235839 212 CpG island CpG island 8523
B3galt5 16 96235801 to 96319859 84058 + protein coding gene UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
D16Jhu62 16 96252316 to 96252509 193 DNA segment DNA segment, Chr 16, Johns Hopkins University 62
Tssr139646 16 96258589 to 96258621 32 + TSS region transcription start site region 139646
Tssr139647 16 96258656 to 96258667 11 + TSS region transcription start site region 139647
Tssr139648 16 96273181 to 96273194 13 + TSS region transcription start site region 139648
Tssr139649 16 96273468 to 96273480 12 + TSS region transcription start site region 139649
Tssr139650 16 96273484 to 96273523 39 + TSS region transcription start site region 139650
Tssr139651 16 96273585 to 96273602 17 + TSS region transcription start site region 139651
Tssr139652 16 96273603 to 96273616 13 + TSS region transcription start site region 139652
Cpgi8524 16 96280574 to 96281158 584 CpG island CpG island 8524
Tssr4974 16 96280801 to 96280867 66 + TSS region transcription start site region 4974
Tssr139653 16 96280982 to 96280994 12 + TSS region transcription start site region 139653
Tssr139654 16 96281011 to 96281026 15 + TSS region transcription start site region 139654
Tssr139655 16 96313725 to 96313727 2 + TSS region transcription start site region 139655
Cpgi8525 16 96315332 to 96315632 300 CpG island CpG island 8525
Tssr139656 16 96330065 to 96330068 3 + TSS region transcription start site region 139656
Gm41510 16 96352081 to 96355027 2946 + lncRNA gene predicted gene, 41510
Cpgi8526 16 96357950 to 96358136 186 CpG island CpG island 8526
Tssr139657 16 96361654 to 96361665 11 + TSS region transcription start site region 139657
Igsf5 16 96361668 to 96422121 60453 + protein coding gene immunoglobulin superfamily, member 5
Tssr139658 16 96361711 to 96361722 11 + TSS region transcription start site region 139658
Tssr139659 16 96361728 to 96361740 12 + TSS region transcription start site region 139659
Tssr139660 16 96361749 to 96361801 52 + TSS region transcription start site region 139660
Gm49948 16 96361794 to 96525580 163786 + protein coding gene predicted gene, 49948
Tssr139661 16 96361805 to 96361816 11 + TSS region transcription start site region 139661
Tssr142292 16 96372420 to 96372427 7 - TSS region transcription start site region 142292
Tssr139662 16 96372576 to 96372583 7 + TSS region transcription start site region 139662
Tssr139663 16 96372658 to 96372672 14 + TSS region transcription start site region 139663
Tssr139664 16 96372685 to 96372708 23 + TSS region transcription start site region 139664
Tssr139665 16 96372709 to 96372723 14 + TSS region transcription start site region 139665
Tssr139666 16 96372839 to 96372853 14 + TSS region transcription start site region 139666
Tssr139667 16 96372883 to 96372905 22 + TSS region transcription start site region 139667
Tssr139668 16 96383898 to 96383910 12 + TSS region transcription start site region 139668
D16Jhu63 16 96386026 to 96386253 227 DNA segment DNA segment, Chr 16, Johns Hopkins University 63
Tssr139669 16 96386324 to 96386344 20 + TSS region transcription start site region 139669
Tssr139670 16 96386390 to 96386400 10 + TSS region transcription start site region 139670
Tssr142293 16 96419213 to 96419214 1 - TSS region transcription start site region 142293
Itgb2l 16 96422295 to 96443626 21331 - protein coding gene integrin beta 2-like
D16Jhu64 16 96424962 to 96425329 367 DNA segment DNA segment, Chr 16, Johns Hopkins University 64
Tssr4975 16 96434580 to 96434585 5 - TSS region transcription start site region 4975
Tssr142294 16 96439637 to 96439640 3 - TSS region transcription start site region 142294
Tssr139671 16 96441226 to 96441240 14 + TSS region transcription start site region 139671
Tssr142295 16 96441664 to 96441669 5 - TSS region transcription start site region 142295
Tssr142296 16 96443595 to 96443641 46 - TSS region transcription start site region 142296
Tssr142297 16 96443665 to 96443676 11 - TSS region transcription start site region 142297
Tssr4976 16 96443710 to 96443735 25 + TSS region transcription start site region 4976
Gm32358 16 96444714 to 96447103 2389 + lncRNA gene predicted gene, 32358
Pcp4 16 96467606 to 96525789 58183 + protein coding gene Purkinje cell protein 4
Tssr139672 16 96467709 to 96467725 16 + TSS region transcription start site region 139672
Tssr139673 16 96493811 to 96493832 21 + TSS region transcription start site region 139673
Tssr139674 16 96499241 to 96499251 10 + TSS region transcription start site region 139674
Tssr139675 16 96499476 to 96499485 9 + TSS region transcription start site region 139675
D16Jhu65 16 96505790 to 96506022 232 DNA segment DNA segment, Chr 16, Johns Hopkins University 65
Tssr139676 16 96525390 to 96525401 11 + TSS region transcription start site region 139676
Tssr139677 16 96525405 to 96525455 50 + TSS region transcription start site region 139677
Tssr139678 16 96525499 to 96525563 64 + TSS region transcription start site region 139678
Tssr139679 16 96525598 to 96525609 11 + TSS region transcription start site region 139679
Tssr139680 16 96531286 to 96531314 28 + TSS region transcription start site region 139680
Tssr139681 16 96569050 to 96569053 3 + TSS region transcription start site region 139681
Dscam 16 96590840 to 97170752 579912 - protein coding gene DS cell adhesion molecule
Gm49907 16 96634370 to 96648952 14582 + antisense lncRNA gene predicted gene, 49907
Cpgi8527 16 96643662 to 96643937 275 CpG island CpG island 8527