Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:96011972-99981990

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267 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro33 16 32312022 to 97830295 65518273 heritable phenotypic marker reproductive mutant 33, JAX Reproductive Mutagenesis Program
Dp(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 chromosomal duplication duplication, Chr 16, H R Reeves 1
Del(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 cytogenetic marker deletion, Chr16, R H Reeves 1
Brwd1 16 95992089 to 96082428 90339 - protein coding gene bromodomain and WD repeat domain containing 1
Tssr142275 16 96017798 to 96017806 8 - TSS region transcription start site region 142275
Gm15342 16 96036090 to 96038743 2653 + unclassified non-coding RNA gene predicted gene 15342
Gm27833 16 96040845 to 96040968 123 - miRNA gene predicted gene, 27833
D16Jhu54 16 96052574 to 96052897 323 DNA segment DNA segment, Chr 16, Johns Hopkins University 54
D16Jhu55 16 96053839 to 96053938 99 DNA segment DNA segment, Chr 16, Johns Hopkins University 55
D16Jhu56 16 96062177 to 96062514 337 DNA segment DNA segment, Chr 16, Johns Hopkins University 56
D16Jhu59 16 96062293 to 96062498 205 DNA segment DNA segment, Chr 16, Johns Hopkins University 59
Tssr142276 16 96064446 to 96064450 4 - TSS region transcription start site region 142276
Tssr142277 16 96068008 to 96068011 3 - TSS region transcription start site region 142277
D16Jhu57 16 96080275 to 96080402 127 DNA segment DNA segment, Chr 16, Johns Hopkins University 57
Cpgi8516 16 96081294 to 96083503 2209 CpG island CpG island 8516
Tssr142278 16 96082363 to 96082374 11 - TSS region transcription start site region 142278
Tssr142279 16 96082389 to 96082481 92 - TSS region transcription start site region 142279
Tssr142280 16 96082513 to 96082573 60 - TSS region transcription start site region 142280
1700093J21Rik 16 96082676 to 96089070 6394 + bidirectional promoter lncRNA gene RIKEN cDNA 1700093J21 gene
Tssr142281 16 96082695 to 96082709 14 - TSS region transcription start site region 142281
Tssr142282 16 96082729 to 96082740 11 - TSS region transcription start site region 142282
D16Jhu58e 16 96088314 to 96088655 341 DNA segment DNA segment, Chr 16, Johns Hopkins University 58, expressed
Cpgi8517 16 96094369 to 96094554 185 CpG island CpG island 8517
Gm49953 16 96097204 to 96114862 17658 + lincRNA gene predicted gene, 49953
Hmgn1 16 96121588 to 96127725 6137 - protein coding gene high mobility group nucleosomal binding domain 1
Tssr142283 16 96124916 to 96124925 9 - TSS region transcription start site region 142283
Tssr142284 16 96124942 to 96124945 3 - TSS region transcription start site region 142284
Tssr142285 16 96124958 to 96124967 9 - TSS region transcription start site region 142285
Cpgi8518 16 96126932 to 96128408 1476 CpG island CpG island 8518
Tssr142286 16 96127464 to 96127496 32 - TSS region transcription start site region 142286
Tssr139630 16 96127543 to 96127554 11 + TSS region transcription start site region 139630
Tssr142287 16 96127689 to 96127736 47 - TSS region transcription start site region 142287
Tssr142288 16 96128016 to 96128031 15 - TSS region transcription start site region 142288
Tssr142289 16 96135878 to 96135888 10 - TSS region transcription start site region 142289
Cpgi8519 16 96145059 to 96145930 871 CpG island CpG island 8519
Tssr139631 16 96145391 to 96145448 57 + TSS region transcription start site region 139631
Wrb 16 96145407 to 96157852 12445 + protein coding gene tryptophan rich basic protein
Gm49928 16 96145476 to 96147584 2108 - antisense lncRNA gene predicted gene, 49928
Cpgi8520 16 96151755 to 96151926 171 CpG island CpG island 8520
Tssr139632 16 96156673 to 96156683 10 + TSS region transcription start site region 139632
Lca5l 16 96158405 to 96192257 33852 - protein coding gene Leber congenital amaurosis 5-like
Cpgi8521 16 96159056 to 96160097 1041 CpG island CpG island 8521
D16Jhu60 16 96161478 to 96161606 128 DNA segment DNA segment, Chr 16, Johns Hopkins University 60
D16Jhu61 16 96161539 to 96161715 176 DNA segment DNA segment, Chr 16, Johns Hopkins University 61
Cpgi8522 16 96191540 to 96192504 964 CpG island CpG island 8522
Tssr142290 16 96192222 to 96192262 40 - TSS region transcription start site region 142290
Sh3bgr 16 96200450 to 96228935 28485 + protein coding gene SH3-binding domain glutamic acid-rich protein
Tssr139633 16 96200488 to 96200491 3 + TSS region transcription start site region 139633
Tssr139634 16 96200535 to 96200556 21 + TSS region transcription start site region 139634
Tssr139635 16 96200570 to 96200587 17 + TSS region transcription start site region 139635
Tssr139636 16 96200595 to 96200608 13 + TSS region transcription start site region 139636
Tssr139637 16 96200609 to 96200620 11 + TSS region transcription start site region 139637
Tssr139638 16 96200628 to 96200655 27 + TSS region transcription start site region 139638
Tssr139639 16 96200666 to 96200706 40 + TSS region transcription start site region 139639
Tssr4973 16 96200715 to 96200720 5 + TSS region transcription start site region 4973
Tssr139640 16 96205813 to 96205833 20 + TSS region transcription start site region 139640
Tssr139641 16 96205841 to 96205858 17 + TSS region transcription start site region 139641
Tssr139642 16 96205860 to 96205865 5 + TSS region transcription start site region 139642
Tssr139643 16 96206350 to 96206369 19 + TSS region transcription start site region 139643
Tssr139644 16 96214008 to 96214022 14 + TSS region transcription start site region 139644
Tssr139645 16 96219480 to 96219495 15 + TSS region transcription start site region 139645
Tssr142291 16 96220529 to 96220559 30 - TSS region transcription start site region 142291
Cpgi8523 16 96235627 to 96235839 212 CpG island CpG island 8523
B3galt5 16 96235801 to 96319859 84058 + protein coding gene UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
D16Jhu62 16 96252316 to 96252509 193 DNA segment DNA segment, Chr 16, Johns Hopkins University 62
Tssr139646 16 96258589 to 96258621 32 + TSS region transcription start site region 139646
Tssr139647 16 96258656 to 96258667 11 + TSS region transcription start site region 139647
Tssr139648 16 96273181 to 96273194 13 + TSS region transcription start site region 139648
Tssr139649 16 96273468 to 96273480 12 + TSS region transcription start site region 139649
Tssr139650 16 96273484 to 96273523 39 + TSS region transcription start site region 139650
Tssr139651 16 96273585 to 96273602 17 + TSS region transcription start site region 139651
Tssr139652 16 96273603 to 96273616 13 + TSS region transcription start site region 139652
Cpgi8524 16 96280574 to 96281158 584 CpG island CpG island 8524
Tssr4974 16 96280801 to 96280867 66 + TSS region transcription start site region 4974
Tssr139653 16 96280982 to 96280994 12 + TSS region transcription start site region 139653
Tssr139654 16 96281011 to 96281026 15 + TSS region transcription start site region 139654
Tssr139655 16 96313725 to 96313727 2 + TSS region transcription start site region 139655
Cpgi8525 16 96315332 to 96315632 300 CpG island CpG island 8525
Tssr139656 16 96330065 to 96330068 3 + TSS region transcription start site region 139656
Gm41510 16 96352081 to 96355027 2946 + lncRNA gene predicted gene, 41510
Cpgi8526 16 96357950 to 96358136 186 CpG island CpG island 8526
Tssr139657 16 96361654 to 96361665 11 + TSS region transcription start site region 139657
Igsf5 16 96361668 to 96422121 60453 + protein coding gene immunoglobulin superfamily, member 5
Tssr139658 16 96361711 to 96361722 11 + TSS region transcription start site region 139658
Tssr139659 16 96361728 to 96361740 12 + TSS region transcription start site region 139659
Tssr139660 16 96361749 to 96361801 52 + TSS region transcription start site region 139660
Gm49948 16 96361794 to 96525580 163786 + protein coding gene predicted gene, 49948
Tssr139661 16 96361805 to 96361816 11 + TSS region transcription start site region 139661
Tssr142292 16 96372420 to 96372427 7 - TSS region transcription start site region 142292
Tssr139662 16 96372576 to 96372583 7 + TSS region transcription start site region 139662
Tssr139663 16 96372658 to 96372672 14 + TSS region transcription start site region 139663
Tssr139664 16 96372685 to 96372708 23 + TSS region transcription start site region 139664
Tssr139665 16 96372709 to 96372723 14 + TSS region transcription start site region 139665
Tssr139666 16 96372839 to 96372853 14 + TSS region transcription start site region 139666
Tssr139667 16 96372883 to 96372905 22 + TSS region transcription start site region 139667
Tssr139668 16 96383898 to 96383910 12 + TSS region transcription start site region 139668
D16Jhu63 16 96386026 to 96386253 227 DNA segment DNA segment, Chr 16, Johns Hopkins University 63
Tssr139669 16 96386324 to 96386344 20 + TSS region transcription start site region 139669
Tssr139670 16 96386390 to 96386400 10 + TSS region transcription start site region 139670
Tssr142293 16 96419213 to 96419214 1 - TSS region transcription start site region 142293
Itgb2l 16 96422295 to 96443626 21331 - protein coding gene integrin beta 2-like
D16Jhu64 16 96424962 to 96425329 367 DNA segment DNA segment, Chr 16, Johns Hopkins University 64
Tssr4975 16 96434580 to 96434585 5 - TSS region transcription start site region 4975
Tssr142294 16 96439637 to 96439640 3 - TSS region transcription start site region 142294
Tssr139671 16 96441226 to 96441240 14 + TSS region transcription start site region 139671
Tssr142295 16 96441664 to 96441669 5 - TSS region transcription start site region 142295
Tssr142296 16 96443595 to 96443641 46 - TSS region transcription start site region 142296
Tssr142297 16 96443665 to 96443676 11 - TSS region transcription start site region 142297
Tssr4976 16 96443710 to 96443735 25 + TSS region transcription start site region 4976
Gm32358 16 96444714 to 96447103 2389 + lncRNA gene predicted gene, 32358
Pcp4 16 96467606 to 96525789 58183 + protein coding gene Purkinje cell protein 4
Tssr139672 16 96467709 to 96467725 16 + TSS region transcription start site region 139672
Tssr139673 16 96493811 to 96493832 21 + TSS region transcription start site region 139673
Tssr139674 16 96499241 to 96499251 10 + TSS region transcription start site region 139674
Tssr139675 16 96499476 to 96499485 9 + TSS region transcription start site region 139675
D16Jhu65 16 96505790 to 96506022 232 DNA segment DNA segment, Chr 16, Johns Hopkins University 65
Tssr139676 16 96525390 to 96525401 11 + TSS region transcription start site region 139676
Tssr139677 16 96525405 to 96525455 50 + TSS region transcription start site region 139677
Tssr139678 16 96525499 to 96525563 64 + TSS region transcription start site region 139678
Tssr139679 16 96525598 to 96525609 11 + TSS region transcription start site region 139679
Tssr139680 16 96531286 to 96531314 28 + TSS region transcription start site region 139680
Tssr139681 16 96569050 to 96569053 3 + TSS region transcription start site region 139681
Dscam 16 96590840 to 97170752 579912 - protein coding gene DS cell adhesion molecule
Gm49907 16 96634370 to 96648952 14582 + antisense lncRNA gene predicted gene, 49907
Cpgi8527 16 96643662 to 96643937 275 CpG island CpG island 8527
D16Jhu66 16 96655650 to 96655872 222 DNA segment DNA segment, Chr 16, Johns Hopkins University 66
Cpgi8528 16 96673585 to 96673787 202 CpG island CpG island 8528
Tssr142298 16 96702788 to 96702794 6 - TSS region transcription start site region 142298
Gm32509 16 96720217 to 96768130 47913 + lncRNA gene predicted gene, 32509
D16Jhu67 16 96721928 to 96722096 168 DNA segment DNA segment, Chr 16, Johns Hopkins University 67
Tssr142299 16 96762804 to 96762808 4 - TSS region transcription start site region 142299
Cpgi8529 16 96819784 to 96819962 178 CpG island CpG island 8529
Cpgi8530 16 96820688 to 96821013 325 CpG island CpG island 8530
D16Jhu68 16 96845642 to 96845852 210 DNA segment DNA segment, Chr 16, Johns Hopkins University 68
D16Jhu69 16 96858314 to 96858613 299 DNA segment DNA segment, Chr 16, Johns Hopkins University 69
D16Jhu70 16 96874364 to 96874577 213 DNA segment DNA segment, Chr 16, Johns Hopkins University 70
D16Mit71 16 96913248 to 96913401 153 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 71
Gm32432 16 96919370 to 96921130 1760 + antisense lncRNA gene predicted gene, 32432
D16Jhu71 16 96961689 to 96961926 237 DNA segment DNA segment, Chr 16, Johns Hopkins University 71
Tssr142300 16 96968933 to 96968935 2 - TSS region transcription start site region 142300
Tssr142301 16 96980131 to 96980135 4 - TSS region transcription start site region 142301
Tssr4977 16 97004119 to 97004121 2 + TSS region transcription start site region 4977
Cpgi8531 16 97169889 to 97171113 1224 CpG island CpG island 8531
Tssr142302 16 97170528 to 97170544 16 - TSS region transcription start site region 142302
Tssr142303 16 97170707 to 97170759 52 - TSS region transcription start site region 142303
Tssr142304 16 97170795 to 97170814 19 - TSS region transcription start site region 142304
Tssr142305 16 97170821 to 97170836 15 - TSS region transcription start site region 142305
Tssr142306 16 97170905 to 97170945 40 - TSS region transcription start site region 142306
Tssr142307 16 97171065 to 97171103 38 - TSS region transcription start site region 142307
D16Jhu72 16 97219244 to 97219415 171 DNA segment DNA segment, Chr 16, Johns Hopkins University 72
D16Jhu73 16 97339324 to 97339632 308 DNA segment DNA segment, Chr 16, Johns Hopkins University 73
G370062D05Rik 16 97355763 to 97357932 2169 unclassified non-coding RNA gene RIKEN cDNA G370062D05 gene
Cpgi8532 16 97356394 to 97357410 1016 CpG island CpG island 8532
Tssr139682 16 97356721 to 97356732 11 + TSS region transcription start site region 139682
Bace2 16 97356728 to 97439012 82284 + protein coding gene beta-site APP-cleaving enzyme 2
Tssr139683 16 97356734 to 97356798 64 + TSS region transcription start site region 139683
Tssr139684 16 97356876 to 97356886 10 + TSS region transcription start site region 139684
Tssr139685 16 97391336 to 97391342 6 + TSS region transcription start site region 139685
D16Jhu75 16 97393319 to 97393709 390 DNA segment DNA segment, Chr 16, Johns Hopkins University 75
D16Mit205 16 97404657 to 97404799 142 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 205
Gm49681 16 97405269 to 97405631 362 + pseudogene predicted gene, 49681
Tssr4978 16 97423703 to 97423704 1 + TSS region transcription start site region 4978
Mx1 16 97447035 to 97462906 15871 - protein coding gene MX dynamin-like GTPase 1
Tssr142308 16 97447660 to 97447664 4 - TSS region transcription start site region 142308
Tssr142309 16 97450405 to 97450419 14 - TSS region transcription start site region 142309
Tssr142310 16 97452868 to 97452878 10 - TSS region transcription start site region 142310
Tssr142311 16 97454015 to 97454030 15 - TSS region transcription start site region 142311
Tssr142312 16 97454210 to 97454224 14 - TSS region transcription start site region 142312
Tssr142313 16 97454242 to 97454254 12 - TSS region transcription start site region 142313
Tssr142314 16 97458981 to 97458991 10 - TSS region transcription start site region 142314
Tssr142315 16 97459162 to 97459174 12 - TSS region transcription start site region 142315
Tssr142316 16 97459508 to 97459531 23 - TSS region transcription start site region 142316
Tssr142317 16 97459597 to 97459621 24 - TSS region transcription start site region 142317
Tssr142318 16 97459847 to 97459861 14 - TSS region transcription start site region 142318
Tssr142319 16 97459881 to 97459899 18 - TSS region transcription start site region 142319
Tssr142320 16 97460481 to 97460491 10 - TSS region transcription start site region 142320
Tssr142321 16 97461480 to 97461502 22 - TSS region transcription start site region 142321
Tssr142322 16 97462903 to 97462908 5 - TSS region transcription start site region 142322
2210009P08Rik 16 97466484 to 97466948 464 - unclassified gene RIKEN cDNA 2210009P08 gene
Fam3b 16 97471086 to 97504936 33850 - protein coding gene family with sequence similarity 3, member B
Tssr142323 16 97478739 to 97478750 11 - TSS region transcription start site region 142323
Tssr139686 16 97489994 to 97489998 4 + TSS region transcription start site region 139686
Gm9242 16 97490041 to 97490910 869 + pseudogene predicted pseudogene 9242
Gm24777 16 97498916 to 97499022 106 - rRNA gene predicted gene, 24777
Tssr142324 16 97504892 to 97504915 23 - TSS region transcription start site region 142324
Tssr142325 16 97504925 to 97504943 18 - TSS region transcription start site region 142325
Tssr139687 16 97511957 to 97511959 2 + TSS region transcription start site region 139687
Tssr142326 16 97514795 to 97514802 7 - TSS region transcription start site region 142326
Tssr142327 16 97514812 to 97514828 16 - TSS region transcription start site region 142327
Tssr139688 16 97535290 to 97535319 29 + TSS region transcription start site region 139688
Tssr139689 16 97536079 to 97536085 6 + TSS region transcription start site region 139689
Mx2 16 97536081 to 97560901 24820 + polymorphic pseudogene MX dynamin-like GTPase 2
Tssr139690 16 97536338 to 97536346 8 + TSS region transcription start site region 139690
Tssr139691 16 97541499 to 97541510 11 + TSS region transcription start site region 139691
Tssr139692 16 97543891 to 97543901 10 + TSS region transcription start site region 139692
Tssr139693 16 97547310 to 97547317 7 + TSS region transcription start site region 139693
Tssr139694 16 97547532 to 97547540 8 + TSS region transcription start site region 139694
Tssr139695 16 97548604 to 97548619 15 + TSS region transcription start site region 139695
Tssr139696 16 97548622 to 97548641 19 + TSS region transcription start site region 139696
Tssr139697 16 97548689 to 97548705 16 + TSS region transcription start site region 139697