Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:96002464-96252496

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Brwd1 16 95992089 to 96082428 90339 - protein coding gene bromodomain and WD repeat domain containing 1
Tssr142274 16 96006797 to 96006812 15 - TSS region transcription start site region 142274
Tssr142275 16 96017798 to 96017806 8 - TSS region transcription start site region 142275
Gm15342 16 96036090 to 96038743 2653 + unclassified non-coding RNA gene predicted gene 15342
Gm27833 16 96040845 to 96040968 123 - miRNA gene predicted gene, 27833
D16Jhu54 16 96052574 to 96052897 323 DNA segment DNA segment, Chr 16, Johns Hopkins University 54
D16Jhu55 16 96053839 to 96053938 99 DNA segment DNA segment, Chr 16, Johns Hopkins University 55
D16Jhu56 16 96062177 to 96062514 337 DNA segment DNA segment, Chr 16, Johns Hopkins University 56
D16Jhu59 16 96062293 to 96062498 205 DNA segment DNA segment, Chr 16, Johns Hopkins University 59
Tssr142276 16 96064446 to 96064450 4 - TSS region transcription start site region 142276
Tssr142277 16 96068008 to 96068011 3 - TSS region transcription start site region 142277
D16Jhu57 16 96080275 to 96080402 127 DNA segment DNA segment, Chr 16, Johns Hopkins University 57
Cpgi8516 16 96081294 to 96083503 2209 CpG island CpG island 8516
Tssr142278 16 96082363 to 96082374 11 - TSS region transcription start site region 142278
Tssr142279 16 96082389 to 96082481 92 - TSS region transcription start site region 142279
Tssr142280 16 96082513 to 96082573 60 - TSS region transcription start site region 142280
1700093J21Rik 16 96082676 to 96089070 6394 + bidirectional promoter lncRNA gene RIKEN cDNA 1700093J21 gene
Tssr142281 16 96082695 to 96082709 14 - TSS region transcription start site region 142281
Tssr142282 16 96082729 to 96082740 11 - TSS region transcription start site region 142282
D16Jhu58e 16 96088314 to 96088655 341 DNA segment DNA segment, Chr 16, Johns Hopkins University 58, expressed
Cpgi8517 16 96094369 to 96094554 185 CpG island CpG island 8517
Gm49953 16 96097204 to 96114862 17658 + lincRNA gene predicted gene, 49953
Hmgn1 16 96121588 to 96127725 6137 - protein coding gene high mobility group nucleosomal binding domain 1
Tssr142283 16 96124916 to 96124925 9 - TSS region transcription start site region 142283
Tssr142284 16 96124942 to 96124945 3 - TSS region transcription start site region 142284
Tssr142285 16 96124958 to 96124967 9 - TSS region transcription start site region 142285
Cpgi8518 16 96126932 to 96128408 1476 CpG island CpG island 8518
Tssr142286 16 96127464 to 96127496 32 - TSS region transcription start site region 142286
Tssr139630 16 96127543 to 96127554 11 + TSS region transcription start site region 139630
Tssr142287 16 96127689 to 96127736 47 - TSS region transcription start site region 142287
Tssr142288 16 96128016 to 96128031 15 - TSS region transcription start site region 142288
Tssr142289 16 96135878 to 96135888 10 - TSS region transcription start site region 142289
Cpgi8519 16 96145059 to 96145930 871 CpG island CpG island 8519
Tssr139631 16 96145391 to 96145448 57 + TSS region transcription start site region 139631
Wrb 16 96145407 to 96157852 12445 + protein coding gene tryptophan rich basic protein
Gm49928 16 96145476 to 96147584 2108 - antisense lncRNA gene predicted gene, 49928
Cpgi8520 16 96151755 to 96151926 171 CpG island CpG island 8520
Tssr139632 16 96156673 to 96156683 10 + TSS region transcription start site region 139632
Lca5l 16 96158405 to 96192257 33852 - protein coding gene Leber congenital amaurosis 5-like
Cpgi8521 16 96159056 to 96160097 1041 CpG island CpG island 8521
D16Jhu60 16 96161478 to 96161606 128 DNA segment DNA segment, Chr 16, Johns Hopkins University 60
D16Jhu61 16 96161539 to 96161715 176 DNA segment DNA segment, Chr 16, Johns Hopkins University 61
Cpgi8522 16 96191540 to 96192504 964 CpG island CpG island 8522
Tssr142290 16 96192222 to 96192262 40 - TSS region transcription start site region 142290
Sh3bgr 16 96200450 to 96228935 28485 + protein coding gene SH3-binding domain glutamic acid-rich protein
Tssr139633 16 96200488 to 96200491 3 + TSS region transcription start site region 139633
Tssr139634 16 96200535 to 96200556 21 + TSS region transcription start site region 139634
Tssr139635 16 96200570 to 96200587 17 + TSS region transcription start site region 139635
Tssr139636 16 96200595 to 96200608 13 + TSS region transcription start site region 139636
Tssr139637 16 96200609 to 96200620 11 + TSS region transcription start site region 139637
Tssr139638 16 96200628 to 96200655 27 + TSS region transcription start site region 139638
Tssr139639 16 96200666 to 96200706 40 + TSS region transcription start site region 139639
Tssr4973 16 96200715 to 96200720 5 + TSS region transcription start site region 4973
Tssr139640 16 96205813 to 96205833 20 + TSS region transcription start site region 139640
Tssr139641 16 96205841 to 96205858 17 + TSS region transcription start site region 139641
Tssr139642 16 96205860 to 96205865 5 + TSS region transcription start site region 139642
Tssr139643 16 96206350 to 96206369 19 + TSS region transcription start site region 139643
Tssr139644 16 96214008 to 96214022 14 + TSS region transcription start site region 139644
Tssr139645 16 96219480 to 96219495 15 + TSS region transcription start site region 139645
Tssr142291 16 96220529 to 96220559 30 - TSS region transcription start site region 142291
Cpgi8523 16 96235627 to 96235839 212 CpG island CpG island 8523
B3galt5 16 96235801 to 96319859 84058 + protein coding gene UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
D16Jhu62 16 96252316 to 96252509 193 DNA segment DNA segment, Chr 16, Johns Hopkins University 62