Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:95800919-96111076

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm32130 16 95764229 to 95802348 38119 - lncRNA gene predicted gene, 32130
Gm41509 16 95797797 to 95805772 7975 + lncRNA gene predicted gene, 41509
2810404F17Rik 16 95806029 to 95808317 2288 - lincRNA gene RIKEN cDNA 2810404F17 gene
Tssr142269 16 95808719 to 95808722 3 - TSS region transcription start site region 142269
Tssr139618 16 95824879 to 95824896 17 + TSS region transcription start site region 139618
1600002D24Rik 16 95831123 to 95929077 97954 - lincRNA gene RIKEN cDNA 1600002D24 gene
Tssr139619 16 95831842 to 95831852 10 + TSS region transcription start site region 139619
D16Jhu48 16 95846228 to 95846382 154 DNA segment DNA segment, Chr 16, Johns Hopkins University 48
Tssr142270 16 95869529 to 95869562 33 - TSS region transcription start site region 142270
Tssr139620 16 95900382 to 95900416 34 + TSS region transcription start site region 139620
Gm15340 16 95900398 to 95901728 1330 + lincRNA gene predicted gene 15340
Tssr139621 16 95900421 to 95900446 25 + TSS region transcription start site region 139621
Tssr139622 16 95900448 to 95900488 40 + TSS region transcription start site region 139622
Tssr139623 16 95900492 to 95900503 11 + TSS region transcription start site region 139623
Tssr139624 16 95900513 to 95900524 11 + TSS region transcription start site region 139624
Tssr139625 16 95900529 to 95900540 11 + TSS region transcription start site region 139625
Tssr139626 16 95900543 to 95900544 1 + TSS region transcription start site region 139626
Tssr142271 16 95901472 to 95901496 24 - TSS region transcription start site region 142271
D16Jhu50 16 95917255 to 95917445 190 DNA segment DNA segment, Chr 16, Johns Hopkins University 50
D16Jhu49 16 95917255 to 95917511 256 DNA segment DNA segment, Chr 16, Johns Hopkins University 49
Tssr139627 16 95921335 to 95921339 4 + TSS region transcription start site region 139627
Gm41508 16 95921408 to 95933273 11865 + lncRNA gene predicted gene, 41508
Tssr139628 16 95924310 to 95924315 5 + TSS region transcription start site region 139628
Tssr139629 16 95926851 to 95926852 1 + TSS region transcription start site region 139629
D16Jhu51 16 95945974 to 95946250 276 DNA segment DNA segment, Chr 16, Johns Hopkins University 51
D16Jhu52 16 95955919 to 95956076 157 DNA segment DNA segment, Chr 16, Johns Hopkins University 52
Psmg1 16 95979935 to 95990903 10968 - protein coding gene proteasome (prosome, macropain) assembly chaperone 1
Cpgi8515 16 95990468 to 95991346 878 CpG island CpG island 8515
Tssr142272 16 95990890 to 95990928 38 - TSS region transcription start site region 142272
Brwd1 16 95992089 to 96082428 90339 - protein coding gene bromodomain and WD repeat domain containing 1
Tssr142273 16 96001710 to 96001720 10 - TSS region transcription start site region 142273
Tssr142274 16 96006797 to 96006812 15 - TSS region transcription start site region 142274
Tssr142275 16 96017798 to 96017806 8 - TSS region transcription start site region 142275
Gm15342 16 96036090 to 96038743 2653 + unclassified non-coding RNA gene predicted gene 15342
Gm27833 16 96040845 to 96040968 123 - miRNA gene predicted gene, 27833
D16Jhu54 16 96052574 to 96052897 323 DNA segment DNA segment, Chr 16, Johns Hopkins University 54
D16Jhu55 16 96053839 to 96053938 99 DNA segment DNA segment, Chr 16, Johns Hopkins University 55
D16Jhu56 16 96062177 to 96062514 337 DNA segment DNA segment, Chr 16, Johns Hopkins University 56
D16Jhu59 16 96062293 to 96062498 205 DNA segment DNA segment, Chr 16, Johns Hopkins University 59
Tssr142276 16 96064446 to 96064450 4 - TSS region transcription start site region 142276
Tssr142277 16 96068008 to 96068011 3 - TSS region transcription start site region 142277
D16Jhu57 16 96080275 to 96080402 127 DNA segment DNA segment, Chr 16, Johns Hopkins University 57
Cpgi8516 16 96081294 to 96083503 2209 CpG island CpG island 8516
Tssr142278 16 96082363 to 96082374 11 - TSS region transcription start site region 142278
Tssr142279 16 96082389 to 96082481 92 - TSS region transcription start site region 142279
Tssr142280 16 96082513 to 96082573 60 - TSS region transcription start site region 142280
1700093J21Rik 16 96082676 to 96089070 6394 + bidirectional promoter lncRNA gene RIKEN cDNA 1700093J21 gene
Tssr142281 16 96082695 to 96082709 14 - TSS region transcription start site region 142281
Tssr142282 16 96082729 to 96082740 11 - TSS region transcription start site region 142282
D16Jhu58e 16 96088314 to 96088655 341 DNA segment DNA segment, Chr 16, Johns Hopkins University 58, expressed
Cpgi8517 16 96094369 to 96094554 185 CpG island CpG island 8517
Gm49953 16 96097204 to 96114862 17658 + lincRNA gene predicted gene, 49953