Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:94941350-97471369

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321 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(16Tiam1-Kcnj6)6Yey 16 89787111 to 94997696 5210585 chromosomal duplication duplication, Chr 16, Y Eugene Yu 6
Del(16Tiam1-Kcnj6)7Yey 16 89787111 to 94997696 5210585 chromosomal deletion deletion, Chr 16, Y Eugene Yu 7
Kcnj6 16 94748683 to 94997696 249013 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 6
Tssr139572 16 94969200 to 94969230 30 + TSS region transcription start site region 139572
Tssr139573 16 94969258 to 94969281 23 + TSS region transcription start site region 139573
Tssr139574 16 94969299 to 94969304 5 + TSS region transcription start site region 139574
Tssr139575 16 94984451 to 94984464 13 + TSS region transcription start site region 139575
Tssr142241 16 94994948 to 94994965 17 - TSS region transcription start site region 142241
Tssr142242 16 94995054 to 94995066 12 - TSS region transcription start site region 142242
Tssr142243 16 94995126 to 94995140 14 - TSS region transcription start site region 142243
Tssr142244 16 94995142 to 94995153 11 - TSS region transcription start site region 142244
Cpgi8509 16 94997113 to 94997986 873 CpG island CpG island 8509
Tssr142245 16 94997374 to 94997437 63 - TSS region transcription start site region 142245
Tssr142246 16 94997470 to 94997486 16 - TSS region transcription start site region 142246
Tssr142247 16 94997576 to 94997592 16 - TSS region transcription start site region 142247
Tssr142248 16 94997607 to 94997616 9 - TSS region transcription start site region 142248
Tssr142249 16 94997653 to 94997704 51 - TSS region transcription start site region 142249
Tssr142250 16 94997706 to 94997727 21 - TSS region transcription start site region 142250
Tssr142251 16 94997738 to 94997753 15 - TSS region transcription start site region 142251
Gm31407 16 94997996 to 95001278 3282 + lncRNA gene predicted gene, 31407
Tssr139576 16 95011063 to 95011066 3 + TSS region transcription start site region 139576
Gm7976 16 95016370 to 95067017 50647 + pseudogene predicted gene 7976
DXIum1 16 95030184 to 95030415 231 DNA segment DNA segment, Chr X, Indiana University Medical 1
Gm49641 16 95102404 to 95103196 792 + pseudogene predicted gene, 49641
Gm49642 16 95169838 to 95171510 1672 - unclassified gene predicted gene, 49642
Gm31641 16 95184537 to 95263333 78796 - antisense lncRNA gene predicted gene, 31641
D16Jhu39 16 95189479 to 95189895 416 DNA segment DNA segment, Chr 16, Johns Hopkins University 39
Gm31754 16 95240531 to 95250457 9926 + lncRNA gene predicted gene, 31754
Tssr139577 16 95241018 to 95241024 6 + TSS region transcription start site region 139577
Kcnj15 16 95257558 to 95300260 42702 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 15
Tssr139578 16 95257574 to 95257579 5 + TSS region transcription start site region 139578
Tssr139579 16 95257617 to 95257644 27 + TSS region transcription start site region 139579
Tssr139580 16 95257646 to 95257685 39 + TSS region transcription start site region 139580
Tssr139581 16 95257773 to 95257782 9 + TSS region transcription start site region 139581
Tssr139582 16 95258155 to 95258205 50 + TSS region transcription start site region 139582
Tssr139583 16 95258209 to 95258244 35 + TSS region transcription start site region 139583
Tssr139584 16 95258262 to 95258302 40 + TSS region transcription start site region 139584
Tssr139585 16 95258310 to 95258333 23 + TSS region transcription start site region 139585
Tssr139586 16 95258339 to 95258371 32 + TSS region transcription start site region 139586
Tssr139587 16 95258372 to 95258397 25 + TSS region transcription start site region 139587
Tssr142252 16 95259610 to 95259622 12 - TSS region transcription start site region 142252
Tssr142253 16 95259698 to 95259710 12 - TSS region transcription start site region 142253
Tssr139588 16 95278508 to 95278523 15 + TSS region transcription start site region 139588
Tssr139589 16 95278528 to 95278541 13 + TSS region transcription start site region 139589
Tssr139590 16 95278558 to 95278567 9 + TSS region transcription start site region 139590
Tssr139591 16 95279354 to 95279367 13 + TSS region transcription start site region 139591
Tssr142254 16 95290475 to 95290479 4 - TSS region transcription start site region 142254
Tssr139592 16 95293101 to 95293110 9 + TSS region transcription start site region 139592
Tssr139593 16 95296922 to 95296941 19 + TSS region transcription start site region 139593
Gm49643 16 95297356 to 95301661 4305 - antisense lncRNA gene predicted gene, 49643
Tssr139594 16 95297890 to 95297900 10 + TSS region transcription start site region 139594
Tssr139595 16 95297963 to 95297985 22 + TSS region transcription start site region 139595
Tssr139596 16 95298694 to 95298715 21 + TSS region transcription start site region 139596
Tssr139597 16 95298797 to 95298820 23 + TSS region transcription start site region 139597
D16Jhu40 16 95307984 to 95308261 277 DNA segment DNA segment, Chr 16, Johns Hopkins University 40
Cpgi8510 16 95341404 to 95341776 372 CpG island CpG island 8510
Tssr142255 16 95349769 to 95349782 13 - TSS region transcription start site region 142255
Tssr142256 16 95349799 to 95349807 8 - TSS region transcription start site region 142256
MHAa83a1.seq 16 95354581 to 95354770 189 DNA segment DNA segment, Chr 16, MHAa83a1.seq
Erg 16 95359169 to 95586593 227424 - protein coding gene ETS transcription factor
Tssr142257 16 95359404 to 95359417 13 - TSS region transcription start site region 142257
Tssr4969 16 95454989 to 95455026 37 + TSS region transcription start site region 4969
Tssr139598 16 95455137 to 95455145 8 + TSS region transcription start site region 139598
Tssr142258 16 95459017 to 95459023 6 - TSS region transcription start site region 142258
Tssr142259 16 95459059 to 95459098 39 - TSS region transcription start site region 142259
Tssr142260 16 95459282 to 95459384 102 - TSS region transcription start site region 142260
Tssr4970 16 95464593 to 95464613 20 - TSS region transcription start site region 4970
D16Jhu41 16 95479430 to 95479646 216 DNA segment DNA segment, Chr 16, Johns Hopkins University 41
D16Jhu42 16 95501693 to 95502084 391 DNA segment DNA segment, Chr 16, Johns Hopkins University 42
Cpgi8512 16 95585177 to 95586124 947 CpG island CpG island 8512
Tssr4971 16 95585553 to 95585560 7 - TSS region transcription start site region 4971
Tssr142261 16 95585568 to 95585588 20 - TSS region transcription start site region 142261
Tssr142262 16 95585625 to 95585643 18 - TSS region transcription start site region 142262
Tssr142263 16 95586585 to 95586595 10 - TSS region transcription start site region 142263
D16Jhu44 16 95593988 to 95594276 288 DNA segment DNA segment, Chr 16, Johns Hopkins University 44
Tssr4972 16 95612595 to 95612597 2 + TSS region transcription start site region 4972
D16Jhu45 16 95653138 to 95653309 171 DNA segment DNA segment, Chr 16, Johns Hopkins University 45
Gm31845 16 95664100 to 95668160 4060 - lncRNA gene predicted gene, 31845
D16Jhu46 16 95669214 to 95669469 255 DNA segment DNA segment, Chr 16, Johns Hopkins University 46
Gm31901 16 95676995 to 95683558 6563 + lncRNA gene predicted gene, 31901
Gm31989 16 95693544 to 95701934 8390 - lncRNA gene predicted gene, 31989
D16Mit219 16 95697133 to 95697246 113 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 219
Tssr139599 16 95698789 to 95698795 6 + TSS region transcription start site region 139599
Tssr139600 16 95700555 to 95700559 4 + TSS region transcription start site region 139600
Cpgi8513 16 95701727 to 95703106 1379 CpG island CpG island 8513
Tssr139601 16 95701979 to 95701991 12 + TSS region transcription start site region 139601
Tssr139602 16 95702044 to 95702094 50 + TSS region transcription start site region 139602
Tssr139603 16 95702099 to 95702110 11 + TSS region transcription start site region 139603
Tssr139604 16 95702398 to 95702435 37 + TSS region transcription start site region 139604
Ets2 16 95702407 to 95721049 18642 + protein coding gene E26 avian leukemia oncogene 2, 3' domain
Tssr139605 16 95702448 to 95702470 22 + TSS region transcription start site region 139605
Tssr139606 16 95703196 to 95703200 4 + TSS region transcription start site region 139606
Tssr139607 16 95703699 to 95703745 46 + TSS region transcription start site region 139607
Tssr139608 16 95703956 to 95703960 4 + TSS region transcription start site region 139608
Tssr139609 16 95709190 to 95709193 3 + TSS region transcription start site region 139609
Tssr142264 16 95715035 to 95715059 24 - TSS region transcription start site region 142264
Tssr139610 16 95715138 to 95715150 12 + TSS region transcription start site region 139610
D16Jhu47 16 95718057 to 95718366 309 DNA segment DNA segment, Chr 16, Johns Hopkins University 47
Tssr139611 16 95718986 to 95718992 6 + TSS region transcription start site region 139611
Tssr139612 16 95719850 to 95719867 17 + TSS region transcription start site region 139612
Tssr139613 16 95719913 to 95719926 13 + TSS region transcription start site region 139613
Tssr142265 16 95728916 to 95728962 46 - TSS region transcription start site region 142265
D16Mit20 16 95743386 to 95743584 198 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 20
Tssr142266 16 95749270 to 95749280 10 - TSS region transcription start site region 142266
Tssr142267 16 95750383 to 95750398 15 - TSS region transcription start site region 142267
Gm6599 16 95754300 to 95754707 407 + pseudogene predicted gene 6599
Gm37259 16 95759836 to 95760684 848 + unclassified gene predicted gene, 37259
Gm32130 16 95764229 to 95802348 38119 - lncRNA gene predicted gene, 32130
Tssr142268 16 95769120 to 95769123 3 - TSS region transcription start site region 142268
Tssr139614 16 95769188 to 95769199 11 + TSS region transcription start site region 139614
Tssr139615 16 95769217 to 95769227 10 + TSS region transcription start site region 139615
Tssr139616 16 95769929 to 95769943 14 + TSS region transcription start site region 139616
Tssr139617 16 95769986 to 95770010 24 + TSS region transcription start site region 139617
Gm41509 16 95797797 to 95805772 7975 + lncRNA gene predicted gene, 41509
Cpgi8514 16 95798155 to 95798480 325 CpG island CpG island 8514
2810404F17Rik 16 95806029 to 95808317 2288 - lincRNA gene RIKEN cDNA 2810404F17 gene
Tssr142269 16 95808719 to 95808722 3 - TSS region transcription start site region 142269
Tssr139618 16 95824879 to 95824896 17 + TSS region transcription start site region 139618
1600002D24Rik 16 95831123 to 95929077 97954 - lincRNA gene RIKEN cDNA 1600002D24 gene
Tssr139619 16 95831842 to 95831852 10 + TSS region transcription start site region 139619
D16Jhu48 16 95846228 to 95846382 154 DNA segment DNA segment, Chr 16, Johns Hopkins University 48
Tssr142270 16 95869529 to 95869562 33 - TSS region transcription start site region 142270
Tssr139620 16 95900382 to 95900416 34 + TSS region transcription start site region 139620
Gm15340 16 95900398 to 95901728 1330 + lincRNA gene predicted gene 15340
Tssr139621 16 95900421 to 95900446 25 + TSS region transcription start site region 139621
Tssr139622 16 95900448 to 95900488 40 + TSS region transcription start site region 139622
Tssr139623 16 95900492 to 95900503 11 + TSS region transcription start site region 139623
Tssr139624 16 95900513 to 95900524 11 + TSS region transcription start site region 139624
Tssr139625 16 95900529 to 95900540 11 + TSS region transcription start site region 139625
Tssr139626 16 95900543 to 95900544 1 + TSS region transcription start site region 139626
Tssr142271 16 95901472 to 95901496 24 - TSS region transcription start site region 142271
D16Jhu49 16 95917255 to 95917511 256 DNA segment DNA segment, Chr 16, Johns Hopkins University 49
D16Jhu50 16 95917255 to 95917445 190 DNA segment DNA segment, Chr 16, Johns Hopkins University 50
Tssr139627 16 95921335 to 95921339 4 + TSS region transcription start site region 139627
Gm41508 16 95921408 to 95933273 11865 + lncRNA gene predicted gene, 41508
Tssr139628 16 95924310 to 95924315 5 + TSS region transcription start site region 139628
Tssr139629 16 95926851 to 95926852 1 + TSS region transcription start site region 139629
D16Jhu51 16 95945974 to 95946250 276 DNA segment DNA segment, Chr 16, Johns Hopkins University 51
D16Jhu52 16 95955919 to 95956076 157 DNA segment DNA segment, Chr 16, Johns Hopkins University 52
Psmg1 16 95979935 to 95990903 10968 - protein coding gene proteasome (prosome, macropain) assembly chaperone 1
Cpgi8515 16 95990468 to 95991346 878 CpG island CpG island 8515
Tssr142272 16 95990890 to 95990928 38 - TSS region transcription start site region 142272
Brwd1 16 95992089 to 96082428 90339 - protein coding gene bromodomain and WD repeat domain containing 1
Tssr142273 16 96001710 to 96001720 10 - TSS region transcription start site region 142273
Tssr142274 16 96006797 to 96006812 15 - TSS region transcription start site region 142274
Tssr142275 16 96017798 to 96017806 8 - TSS region transcription start site region 142275
Gm15342 16 96036090 to 96038743 2653 + unclassified non-coding RNA gene predicted gene 15342
Gm27833 16 96040845 to 96040968 123 - miRNA gene predicted gene, 27833
D16Jhu54 16 96052574 to 96052897 323 DNA segment DNA segment, Chr 16, Johns Hopkins University 54
D16Jhu55 16 96053839 to 96053938 99 DNA segment DNA segment, Chr 16, Johns Hopkins University 55
D16Jhu56 16 96062177 to 96062514 337 DNA segment DNA segment, Chr 16, Johns Hopkins University 56
D16Jhu59 16 96062293 to 96062498 205 DNA segment DNA segment, Chr 16, Johns Hopkins University 59
Tssr142276 16 96064446 to 96064450 4 - TSS region transcription start site region 142276
Tssr142277 16 96068008 to 96068011 3 - TSS region transcription start site region 142277
D16Jhu57 16 96080275 to 96080402 127 DNA segment DNA segment, Chr 16, Johns Hopkins University 57
Cpgi8516 16 96081294 to 96083503 2209 CpG island CpG island 8516
Tssr142278 16 96082363 to 96082374 11 - TSS region transcription start site region 142278
Tssr142279 16 96082389 to 96082481 92 - TSS region transcription start site region 142279
Tssr142280 16 96082513 to 96082573 60 - TSS region transcription start site region 142280
1700093J21Rik 16 96082676 to 96089070 6394 + bidirectional promoter lncRNA gene RIKEN cDNA 1700093J21 gene
Tssr142281 16 96082695 to 96082709 14 - TSS region transcription start site region 142281
Tssr142282 16 96082729 to 96082740 11 - TSS region transcription start site region 142282
D16Jhu58e 16 96088314 to 96088655 341 DNA segment DNA segment, Chr 16, Johns Hopkins University 58, expressed
Cpgi8517 16 96094369 to 96094554 185 CpG island CpG island 8517
Gm49953 16 96097204 to 96114862 17658 + lincRNA gene predicted gene, 49953
Hmgn1 16 96121588 to 96127725 6137 - protein coding gene high mobility group nucleosomal binding domain 1
Tssr142283 16 96124916 to 96124925 9 - TSS region transcription start site region 142283
Tssr142284 16 96124942 to 96124945 3 - TSS region transcription start site region 142284
Tssr142285 16 96124958 to 96124967 9 - TSS region transcription start site region 142285
Cpgi8518 16 96126932 to 96128408 1476 CpG island CpG island 8518
Tssr142286 16 96127464 to 96127496 32 - TSS region transcription start site region 142286
Tssr139630 16 96127543 to 96127554 11 + TSS region transcription start site region 139630
Tssr142287 16 96127689 to 96127736 47 - TSS region transcription start site region 142287
Tssr142288 16 96128016 to 96128031 15 - TSS region transcription start site region 142288
Tssr142289 16 96135878 to 96135888 10 - TSS region transcription start site region 142289
Cpgi8519 16 96145059 to 96145930 871 CpG island CpG island 8519
Tssr139631 16 96145391 to 96145448 57 + TSS region transcription start site region 139631
Wrb 16 96145407 to 96157852 12445 + protein coding gene tryptophan rich basic protein
Gm49928 16 96145476 to 96147584 2108 - antisense lncRNA gene predicted gene, 49928
Cpgi8520 16 96151755 to 96151926 171 CpG island CpG island 8520
Tssr139632 16 96156673 to 96156683 10 + TSS region transcription start site region 139632
Lca5l 16 96158405 to 96192257 33852 - protein coding gene Leber congenital amaurosis 5-like
Cpgi8521 16 96159056 to 96160097 1041 CpG island CpG island 8521
D16Jhu60 16 96161478 to 96161606 128 DNA segment DNA segment, Chr 16, Johns Hopkins University 60
D16Jhu61 16 96161539 to 96161715 176 DNA segment DNA segment, Chr 16, Johns Hopkins University 61
Cpgi8522 16 96191540 to 96192504 964 CpG island CpG island 8522
Tssr142290 16 96192222 to 96192262 40 - TSS region transcription start site region 142290
Sh3bgr 16 96200450 to 96228935 28485 + protein coding gene SH3-binding domain glutamic acid-rich protein
Tssr139633 16 96200488 to 96200491 3 + TSS region transcription start site region 139633
Tssr139634 16 96200535 to 96200556 21 + TSS region transcription start site region 139634
Tssr139635 16 96200570 to 96200587 17 + TSS region transcription start site region 139635
Tssr139636 16 96200595 to 96200608 13 + TSS region transcription start site region 139636
Tssr139637 16 96200609 to 96200620 11 + TSS region transcription start site region 139637
Tssr139638 16 96200628 to 96200655 27 + TSS region transcription start site region 139638
Tssr139639 16 96200666 to 96200706 40 + TSS region transcription start site region 139639
Tssr4973 16 96200715 to 96200720 5 + TSS region transcription start site region 4973
Tssr139640 16 96205813 to 96205833 20 + TSS region transcription start site region 139640
Tssr139641 16 96205841 to 96205858 17 + TSS region transcription start site region 139641
Tssr139642 16 96205860 to 96205865 5 + TSS region transcription start site region 139642
Tssr139643 16 96206350 to 96206369 19 + TSS region transcription start site region 139643