Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:9454642-11248405

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279 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D16Mit109 16 9482993 to 9483122 129 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 109
Tssr139886 16 9570987 to 9570994 7 - TSS region transcription start site region 139886
Tssr139887 16 9571969 to 9571970 1 - TSS region transcription start site region 139887
Grin2a 16 9577039 to 9996500 419461 - protein coding gene glutamate receptor, ionotropic, NMDA2A (epsilon 1)
D16Mit87 16 9812751 to 9812884 133 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 87
Gm19143 16 9819893 to 9820568 675 + pseudogene predicted gene, 19143
Tssr139888 16 9895029 to 9895043 14 - TSS region transcription start site region 139888
D16Mit183 16 9916544 to 9916658 114 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 183
Tssr139889 16 9919755 to 9919768 13 - TSS region transcription start site region 139889
Tssr139890 16 9919798 to 9919810 12 - TSS region transcription start site region 139890
Tssr139891 16 9921156 to 9921174 18 - TSS region transcription start site region 139891
2900045O03Rik 16 9935229 to 9935829 600 unclassified non-coding RNA gene RIKEN cDNA 2900045O03 gene
D16Mit33 16 9945538 to 9945663 125 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 33
Tssr139892 16 9967454 to 9967465 11 - TSS region transcription start site region 139892
Tssr4788 16 9967489 to 9967501 12 - TSS region transcription start site region 4788
Cpgi7945 16 9992195 to 9996027 3832 CpG island CpG island 7945
Tssr139893 16 9994547 to 9994567 20 - TSS region transcription start site region 139893
Tssr139894 16 9995000 to 9995012 12 - TSS region transcription start site region 139894
Tssr139895 16 9995044 to 9995088 44 - TSS region transcription start site region 139895
Tssr139896 16 9995299 to 9995304 5 - TSS region transcription start site region 139896
Tssr139897 16 9995315 to 9995343 28 - TSS region transcription start site region 139897
Tssr139898 16 9995348 to 9995372 24 - TSS region transcription start site region 139898
Tssr139899 16 9995378 to 9995400 22 - TSS region transcription start site region 139899
Tssr139900 16 9995412 to 9995443 31 - TSS region transcription start site region 139900
Tssr139901 16 9995508 to 9995519 11 - TSS region transcription start site region 139901
Tssr139902 16 9995526 to 9995549 23 - TSS region transcription start site region 139902
Tssr139903 16 9995562 to 9995581 19 - TSS region transcription start site region 139903
Tssr139904 16 9995628 to 9995669 41 - TSS region transcription start site region 139904
Tssr139905 16 9995701 to 9995725 24 - TSS region transcription start site region 139905
Tssr139906 16 9995806 to 9995818 12 - TSS region transcription start site region 139906
Gm30668 16 10005988 to 9997209 -8779 - lncRNA gene predicted gene, 30668
Gm7572 16 10044965 to 10045730 765 + pseudogene predicted gene 7572
Gm3890 16 10045759 to 10045965 206 - pseudogene predicted gene 3890
Tssr139907 16 10128534 to 10128554 20 - TSS region transcription start site region 139907
Cpgi7946 16 10170071 to 10170331 260 CpG island CpG island 7946
Tssr137020 16 10170216 to 10170227 11 + TSS region transcription start site region 137020
Rpl39l 16 10170226 to 10174911 4685 + protein coding gene ribosomal protein L39-like
Tssr137021 16 10170228 to 10170263 35 + TSS region transcription start site region 137021
Gm49455 16 10186293 to 10227524 41231 - antisense lncRNA gene predicted gene, 49455
Atf7ip2 16 10192638 to 10249669 57031 + protein coding gene activating transcription factor 7 interacting protein 2
Cpgi7947 16 10192703 to 10193479 776 CpG island CpG island 7947
Tssr4789 16 10192876 to 10192883 7 + TSS region transcription start site region 4789
Tssr137022 16 10192910 to 10192927 17 + TSS region transcription start site region 137022
Gm24667 16 10237918 to 10238020 102 + snRNA gene predicted gene, 24667
Gm49456 16 10238166 to 10238516 350 + pseudogene predicted gene, 49456
Gm22932 16 10273750 to 10273821 71 + miRNA gene predicted gene, 22932
2310063J23Rik 16 10276946 to 10277121 175 unclassified gene RIKEN cDNA 2310063J23 gene
Tssr139908 16 10280238 to 10280240 2 - TSS region transcription start site region 139908
Emp2 16 10281749 to 10313968 32219 - protein coding gene epithelial membrane protein 2
Tssr4790 16 10284335 to 10284356 21 - TSS region transcription start site region 4790
Tssr139909 16 10292358 to 10292381 23 - TSS region transcription start site region 139909
Tssr139910 16 10294452 to 10294462 10 - TSS region transcription start site region 139910
Tssr139911 16 10297143 to 10297148 5 - TSS region transcription start site region 139911
Cpgi7948 16 10313327 to 10314193 866 CpG island CpG island 7948
Tssr139912 16 10313836 to 10313851 15 - TSS region transcription start site region 139912
Tssr139913 16 10313862 to 10313899 37 - TSS region transcription start site region 139913
Tssr139914 16 10313900 to 10313907 7 - TSS region transcription start site region 139914
Tssr139915 16 10313912 to 10313919 7 - TSS region transcription start site region 139915
Tssr139916 16 10313922 to 10313936 14 - TSS region transcription start site region 139916
Tssr139917 16 10313940 to 10313953 13 - TSS region transcription start site region 139917
Gm1600 16 10324105 to 10331285 7180 - lincRNA gene predicted gene 1600
Tssr139918 16 10347569 to 10347613 44 - TSS region transcription start site region 139918
Gm30724 16 10349642 to 10353405 3763 + lncRNA gene predicted gene, 30724
Tekt5 16 10357952 to 10395465 37513 - protein coding gene tektin 5
Cpgi7949 16 10358072 to 10358435 363 CpG island CpG island 7949
D16Mit206 16 10366515 to 10366651 136 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-206
Gm41419 16 10371350 to 10378934 7584 + lncRNA gene predicted gene, 41419
Tssr139919 16 10384063 to 10384092 29 - TSS region transcription start site region 139919
Cpgi7950 16 10394900 to 10395393 493 CpG island CpG island 7950
Tssr139920 16 10395268 to 10395339 71 - TSS region transcription start site region 139920
Tssr139921 16 10395438 to 10395460 22 - TSS region transcription start site region 139921
Tssr139922 16 10395476 to 10395483 7 - TSS region transcription start site region 139922
Cpgi7951 16 10411783 to 10412314 531 CpG island CpG island 7951
Tssr137023 16 10411928 to 10411965 37 + TSS region transcription start site region 137023
Nubp1 16 10411948 to 10424428 12480 + protein coding gene nucleotide binding protein 1
Tvp23a 16 10420557 to 10447362 26805 - protein coding gene trans-golgi network vesicle protein 23A
Tssr139923 16 10447319 to 10447331 12 - TSS region transcription start site region 139923
Tssr139924 16 10447340 to 10447369 29 - TSS region transcription start site region 139924
Tssr139925 16 10447371 to 10447389 18 - TSS region transcription start site region 139925
Tssr137024 16 10447412 to 10447450 38 + TSS region transcription start site region 137024
Tssr137025 16 10452813 to 10452838 25 + TSS region transcription start site region 137025
Gm41420 16 10470794 to 10473103 2309 + lncRNA gene predicted gene, 41420
Tssr137026 16 10479921 to 10479940 19 + TSS region transcription start site region 137026
Ciita 16 10480059 to 10528418 48359 + protein coding gene class II transactivator
Tssr137027 16 10480065 to 10480080 15 + TSS region transcription start site region 137027
Tssr137028 16 10480120 to 10480121 1 + TSS region transcription start site region 137028
Tssr137029 16 10480131 to 10480134 3 + TSS region transcription start site region 137029
Tssr137030 16 10480148 to 10480153 5 + TSS region transcription start site region 137030
Tssr137031 16 10484138 to 10484166 28 + TSS region transcription start site region 137031
Tssr137032 16 10488175 to 10488204 29 + TSS region transcription start site region 137032
Tssr137033 16 10488213 to 10488253 40 + TSS region transcription start site region 137033
Tssr137034 16 10489728 to 10489757 29 + TSS region transcription start site region 137034
Tssr137035 16 10489759 to 10489804 45 + TSS region transcription start site region 137035
Tssr137036 16 10489806 to 10489827 21 + TSS region transcription start site region 137036
Dexi 16 10502531 to 10543054 40523 - protein coding gene dexamethasone-induced transcript
Cpgi7952 16 10511051 to 10511294 243 CpG island CpG island 7952
Tssr137037 16 10526331 to 10526343 12 + TSS region transcription start site region 137037
Tssr137038 16 10526361 to 10526373 12 + TSS region transcription start site region 137038
Tssr137039 16 10526429 to 10526440 11 + TSS region transcription start site region 137039
Tssr137040 16 10526464 to 10526468 4 + TSS region transcription start site region 137040
Tssr137041 16 10536856 to 10536860 4 + TSS region transcription start site region 137041
Cpgi7953 16 10542212 to 10543296 1084 CpG island CpG island 7953
Tssr139926 16 10543028 to 10543096 68 - TSS region transcription start site region 139926
Cpgi7954 16 10544901 to 10546130 1229 CpG island CpG island 7954
Clec16a 16 10545339 to 10744878 199539 + protein coding gene C-type lectin domain family 16, member A
Tssr137042 16 10545340 to 10545351 11 + TSS region transcription start site region 137042
Tssr137043 16 10545358 to 10545388 30 + TSS region transcription start site region 137043
Tssr137044 16 10545390 to 10545427 37 + TSS region transcription start site region 137044
Tssr137045 16 10545428 to 10545454 26 + TSS region transcription start site region 137045
D16Mit161 16 10562439 to 10562558 119 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 161
Tssr139927 16 10668575 to 10668594 19 - TSS region transcription start site region 139927
Gm15558 16 10669248 to 10683539 14291 - antisense lncRNA gene predicted gene 15558
Tssr139928 16 10683284 to 10683295 11 - TSS region transcription start site region 139928
Tssr139929 16 10683318 to 10683356 38 - TSS region transcription start site region 139929
Tssr139930 16 10683533 to 10683544 11 - TSS region transcription start site region 139930
Tssr139931 16 10683554 to 10683563 9 - TSS region transcription start site region 139931
Tssr139932 16 10683583 to 10683596 13 - TSS region transcription start site region 139932
Tssr139933 16 10683624 to 10683633 9 - TSS region transcription start site region 139933
Tssr137046 16 10690227 to 10690268 41 + TSS region transcription start site region 137046
Tssr139934 16 10700280 to 10700285 5 - TSS region transcription start site region 139934
Tssr137047 16 10700334 to 10700341 7 + TSS region transcription start site region 137047
Tssr137048 16 10716164 to 10716169 5 + TSS region transcription start site region 137048
D16Bwg1278e 16 10740886 to 10741040 154 DNA segment DNA segment, Chr 16, Brigham & Women's Genetics 1278 expressed
Tssr137049 16 10769988 to 10769995 7 + TSS region transcription start site region 137049
Tssr139935 16 10772184 to 10772205 21 - TSS region transcription start site region 139935
Tssr137050 16 10772348 to 10772352 4 + TSS region transcription start site region 137050
Socs1 16 10783808 to 10785536 1728 - protein coding gene suppressor of cytokine signaling 1
Cpgi7955 16 10783924 to 10786178 2254 CpG island CpG island 7955
Tssr139936 16 10784687 to 10784704 17 - TSS region transcription start site region 139936
Tssr139937 16 10784708 to 10784719 11 - TSS region transcription start site region 139937
Tssr139938 16 10784731 to 10784742 11 - TSS region transcription start site region 139938
Tssr139939 16 10784747 to 10784754 7 - TSS region transcription start site region 139939
Tssr139940 16 10784837 to 10784849 12 - TSS region transcription start site region 139940
Tssr139941 16 10784897 to 10784912 15 - TSS region transcription start site region 139941
Tssr139942 16 10785035 to 10785057 22 - TSS region transcription start site region 139942
Tssr139943 16 10785059 to 10785089 30 - TSS region transcription start site region 139943
Tssr139944 16 10785186 to 10785195 9 - TSS region transcription start site region 139944
Tssr139945 16 10785525 to 10785543 18 - TSS region transcription start site region 139945
Tssr137051 16 10785620 to 10785649 29 + TSS region transcription start site region 137051
Tssr139946 16 10786000 to 10786011 11 - TSS region transcription start site region 139946
Tssr139947 16 10786469 to 10786499 30 - TSS region transcription start site region 139947
Tnp2 16 10787935 to 10788655 720 - protein coding gene transition protein 2
Tssr139948 16 10787977 to 10788009 32 - TSS region transcription start site region 139948
Tssr137052 16 10788304 to 10788350 46 + TSS region transcription start site region 137052
Tssr139949 16 10788649 to 10788668 19 - TSS region transcription start site region 139949
Prm3 16 10790508 to 10790914 406 - protein coding gene protamine 3
Tssr139950 16 10790902 to 10790919 17 - TSS region transcription start site region 139950
Tssr139951 16 10790941 to 10790950 9 - TSS region transcription start site region 139951
Prm2 16 10791377 to 10792105 728 - protein coding gene protamine 2
Tssr137053 16 10791433 to 10791448 15 + TSS region transcription start site region 137053
Tssr139952 16 10791479 to 10791483 4 - TSS region transcription start site region 139952
Tssr137054 16 10791583 to 10791591 8 + TSS region transcription start site region 137054
Tssr139953 16 10791584 to 10791587 3 - TSS region transcription start site region 139953
Tssr139954 16 10791633 to 10791640 7 - TSS region transcription start site region 139954
Tssr139955 16 10791731 to 10791739 8 - TSS region transcription start site region 139955
Tssr137055 16 10791801 to 10791818 17 + TSS region transcription start site region 137055
Tssr137056 16 10791824 to 10791832 8 + TSS region transcription start site region 137056
Gm46564 16 10791971 to 10796476 4505 + lncRNA gene predicted gene, 46564
Tssr139956 16 10792095 to 10792107 12 - TSS region transcription start site region 139956
Tssr139957 16 10793133 to 10793165 32 - TSS region transcription start site region 139957
Tssr139958 16 10795942 to 10795951 9 - TSS region transcription start site region 139958
Tssr139959 16 10796047 to 10796056 9 - TSS region transcription start site region 139959
Tssr139960 16 10796127 to 10796152 25 - TSS region transcription start site region 139960
Tssr139961 16 10796274 to 10796278 4 - TSS region transcription start site region 139961
Prm1 16 10796332 to 10796823 491 - protein coding gene protamine 1
Tssr4791 16 10796358 to 10796370 12 + TSS region transcription start site region 4791
Tssr139962 16 10796367 to 10796374 7 - TSS region transcription start site region 139962
Tssr139963 16 10796411 to 10796414 3 - TSS region transcription start site region 139963
Tssr139964 16 10796511 to 10796524 13 - TSS region transcription start site region 139964
Tssr139965 16 10796531 to 10796539 8 - TSS region transcription start site region 139965
Tssr139966 16 10796815 to 10796830 15 - TSS region transcription start site region 139966
Gm46563 16 10796936 to 10798062 1126 + antisense lncRNA gene predicted gene, 46563
Tssr4792 16 10797034 to 10797064 30 + TSS region transcription start site region 4792
Gm10343 16 10801381 to 10801713 332 + pseudogene predicted gene 10343
Gm11172 16 10812915 to 10812994 79 + protein coding gene predicted gene 11172
Tssr137057 16 10827390 to 10827395 5 + TSS region transcription start site region 137057
Tssr137058 16 10827921 to 10827944 23 + TSS region transcription start site region 137058
Gm26822 16 10827927 to 10833507 5580 + lincRNA gene predicted gene, 26822
Gm17913 16 10834551 to 10835116 565 - pseudogene predicted gene, 17913
Cpgi7956 16 10834717 to 10835650 933 CpG island CpG island 7956
Tssr137059 16 10835046 to 10835084 38 + TSS region transcription start site region 137059
Rmi2 16 10835059 to 10843235 8176 + protein coding gene RecQ mediated genome instability 2
Tssr137060 16 10835086 to 10835093 7 + TSS region transcription start site region 137060
Tssr139967 16 10835334 to 10835369 35 - TSS region transcription start site region 139967
Tssr137061 16 10835490 to 10835504 14 + TSS region transcription start site region 137061
Tssr137062 16 10835520 to 10835534 14 + TSS region transcription start site region 137062
Tssr139968 16 10836506 to 10836517 11 - TSS region transcription start site region 139968
Tssr137063 16 10837980 to 10838002 22 + TSS region transcription start site region 137063
Tssr139969 16 10838547 to 10838575 28 - TSS region transcription start site region 139969
Gm49960 16 10861755 to 10938364 76609 - pseudogene predicted gene, 49960
Gm21859 16 10912012 to 10914797 2785 - lncRNA gene predicted gene, 21859
Tssr139970 16 10954775 to 10954782 7 - TSS region transcription start site region 139970
Litaf 16 10959273 to 10993121 33848 - protein coding gene LPS-induced TN factor
Tssr139971 16 10960458 to 10960461 3 - TSS region transcription start site region 139971
Tssr139972 16 10960521 to 10960544 23 - TSS region transcription start site region 139972
Tssr139973 16 10960580 to 10960591 11 - TSS region transcription start site region 139973
Tssr139974 16 10960707 to 10960714 7 - TSS region transcription start site region 139974
Tssr137064 16 10960855 to 10960866 11 + TSS region transcription start site region 137064
Tssr139975 16 10960911 to 10960914 3 - TSS region transcription start site region 139975
Tssr139976 16 10960988 to 10961002 14 - TSS region transcription start site region 139976