Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:94392607-95602616

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(16Tiam1-Kcnj6)6Yey 16 89787111 to 94997696 5210585 chromosomal duplication duplication, Chr 16, Y Eugene Yu 6
Del(16Tiam1-Kcnj6)7Yey 16 89787111 to 94997696 5210585 chromosomal deletion deletion, Chr 16, Y Eugene Yu 7
Ttc3 16 94370620 to 94469222 98602 + protein coding gene tetratricopeptide repeat domain 3
Tssr139545 16 94410823 to 94410861 38 + TSS region transcription start site region 139545
Tssr139546 16 94420301 to 94420320 19 + TSS region transcription start site region 139546
Tssr139547 16 94425083 to 94425107 24 + TSS region transcription start site region 139547
Tssr139548 16 94426184 to 94426197 13 + TSS region transcription start site region 139548
Gm23692 16 94429073 to 94429232 159 + snRNA gene predicted gene, 23692
Tssr139549 16 94442581 to 94442599 18 + TSS region transcription start site region 139549
Tssr139550 16 94448108 to 94448119 11 + TSS region transcription start site region 139550
Tssr139551 16 94454411 to 94454452 41 + TSS region transcription start site region 139551
Tssr139552 16 94454472 to 94454484 12 + TSS region transcription start site region 139552
Tssr139553 16 94459953 to 94459966 13 + TSS region transcription start site region 139553
Tssr139554 16 94468497 to 94468501 4 + TSS region transcription start site region 139554
Gm31323 16 94488777 to 94522117 33340 + antisense lncRNA gene predicted gene, 31323
Vps26c 16 94497724 to 94526629 28905 - protein coding gene VPS26 endosomal protein sorting factor C
Tssr142231 16 94498647 to 94498677 30 - TSS region transcription start site region 142231
Tssr139555 16 94502463 to 94502470 7 + TSS region transcription start site region 139555
4930586H24Rik 16 94521597 to 94522308 711 unclassified gene RIKEN cDNA 4930586H24 gene
Cpgi8503 16 94525944 to 94527331 1387 CpG island CpG island 8503
Tssr142232 16 94526396 to 94526451 55 - TSS region transcription start site region 142232
Tssr142233 16 94526830 to 94526839 9 - TSS region transcription start site region 142233
Tssr139556 16 94527037 to 94527094 57 + TSS region transcription start site region 139556
Tssr139557 16 94552210 to 94552224 14 + TSS region transcription start site region 139557
Cpgi8504 16 94568868 to 94571124 2256 CpG island CpG island 8504
Tssr139558 16 94569651 to 94569713 62 + TSS region transcription start site region 139558
Tssr139559 16 94569716 to 94569769 53 + TSS region transcription start site region 139559
Tssr139560 16 94569774 to 94569787 13 + TSS region transcription start site region 139560
Tssr139561 16 94569806 to 94569831 25 + TSS region transcription start site region 139561
Tssr139562 16 94569905 to 94569953 48 + TSS region transcription start site region 139562
Dyrk1a 16 94570010 to 94695517 125507 + protein coding gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
Tssr139563 16 94570012 to 94570052 40 + TSS region transcription start site region 139563
Tssr142234 16 94570756 to 94570771 15 - TSS region transcription start site region 142234
Tssr142235 16 94570776 to 94570802 26 - TSS region transcription start site region 142235
Tssr142236 16 94571117 to 94571141 24 - TSS region transcription start site region 142236
Gm15971 16 94620377 to 94620587 210 + pseudogene predicted gene 15971
Tssr139564 16 94629710 to 94629713 3 + TSS region transcription start site region 139564
Tssr139565 16 94694212 to 94694251 39 + TSS region transcription start site region 139565
Gm41504 16 94712559 to 94713903 1344 - lncRNA gene predicted gene, 41504
Cpgi8505 16 94713600 to 94714111 511 CpG island CpG island 8505
Tssr139566 16 94721880 to 94721900 20 + TSS region transcription start site region 139566
Tssr139567 16 94721955 to 94721968 13 + TSS region transcription start site region 139567
Tssr139568 16 94721980 to 94721991 11 + TSS region transcription start site region 139568
Gm41507 16 94723328 to 94725397 2069 - lncRNA gene predicted gene, 41507
Cpgi8506 16 94724201 to 94725276 1075 CpG island CpG island 8506
Tssr139569 16 94724486 to 94724505 19 + TSS region transcription start site region 139569
Tssr139570 16 94732125 to 94732127 2 + TSS region transcription start site region 139570
Kcnj6 16 94748683 to 94997696 249013 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 6
6530402D11Rik 16 94749774 to 94751034 1260 protein coding gene RIKEN cDNA 6530402D11 gene
Gm41505 16 94752728 to 94753436 708 + antisense lncRNA gene predicted gene, 41505
Tssr4968 16 94760925 to 94760926 1 - TSS region transcription start site region 4968
Tssr139571 16 94780155 to 94780167 12 + TSS region transcription start site region 139571
Cpgi8507 16 94788172 to 94788492 320 CpG island CpG island 8507
Cpgi8508 16 94798093 to 94798278 185 CpG island CpG island 8508
Tssr142237 16 94856682 to 94856697 15 - TSS region transcription start site region 142237
D16Ium52 16 94861552 to 94861922 370 DNA segment DNA segment, Chr 16, Indiana University Medical 52
Gm22745 16 94869464 to 94869533 69 + miRNA gene predicted gene, 22745
Tssr142238 16 94902292 to 94902295 3 - TSS region transcription start site region 142238
D16Jhu38 16 94910284 to 94910432 148 DNA segment DNA segment, Chr 16, Johns Hopkins University 38
Tssr142239 16 94918322 to 94918334 12 - TSS region transcription start site region 142239
Tssr142240 16 94918385 to 94918389 4 - TSS region transcription start site region 142240
Tssr139572 16 94969200 to 94969230 30 + TSS region transcription start site region 139572
Tssr139573 16 94969258 to 94969281 23 + TSS region transcription start site region 139573
Tssr139574 16 94969299 to 94969304 5 + TSS region transcription start site region 139574
Tssr139575 16 94984451 to 94984464 13 + TSS region transcription start site region 139575
Tssr142241 16 94994948 to 94994965 17 - TSS region transcription start site region 142241
Tssr142242 16 94995054 to 94995066 12 - TSS region transcription start site region 142242
Tssr142243 16 94995126 to 94995140 14 - TSS region transcription start site region 142243
Tssr142244 16 94995142 to 94995153 11 - TSS region transcription start site region 142244
Cpgi8509 16 94997113 to 94997986 873 CpG island CpG island 8509
Tssr142245 16 94997374 to 94997437 63 - TSS region transcription start site region 142245
Tssr142246 16 94997470 to 94997486 16 - TSS region transcription start site region 142246
Tssr142247 16 94997576 to 94997592 16 - TSS region transcription start site region 142247
Tssr142248 16 94997607 to 94997616 9 - TSS region transcription start site region 142248
Tssr142249 16 94997653 to 94997704 51 - TSS region transcription start site region 142249
Tssr142250 16 94997706 to 94997727 21 - TSS region transcription start site region 142250
Tssr142251 16 94997738 to 94997753 15 - TSS region transcription start site region 142251
Gm31407 16 94997996 to 95001278 3282 + lncRNA gene predicted gene, 31407
Tssr139576 16 95011063 to 95011066 3 + TSS region transcription start site region 139576
Gm7976 16 95016370 to 95067017 50647 + pseudogene predicted gene 7976
DXIum1 16 95030184 to 95030415 231 DNA segment DNA segment, Chr X, Indiana University Medical 1
Gm49641 16 95102404 to 95103196 792 + pseudogene predicted gene, 49641
Gm49642 16 95169838 to 95171510 1672 - unclassified gene predicted gene, 49642
Gm31641 16 95184537 to 95263333 78796 - antisense lncRNA gene predicted gene, 31641
D16Jhu39 16 95189479 to 95189895 416 DNA segment DNA segment, Chr 16, Johns Hopkins University 39
Gm31754 16 95240531 to 95250457 9926 + lncRNA gene predicted gene, 31754
Tssr139577 16 95241018 to 95241024 6 + TSS region transcription start site region 139577
Kcnj15 16 95257558 to 95300260 42702 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 15
Tssr139578 16 95257574 to 95257579 5 + TSS region transcription start site region 139578
Tssr139579 16 95257617 to 95257644 27 + TSS region transcription start site region 139579
Tssr139580 16 95257646 to 95257685 39 + TSS region transcription start site region 139580
Tssr139581 16 95257773 to 95257782 9 + TSS region transcription start site region 139581
Tssr139582 16 95258155 to 95258205 50 + TSS region transcription start site region 139582
Tssr139583 16 95258209 to 95258244 35 + TSS region transcription start site region 139583
Tssr139584 16 95258262 to 95258302 40 + TSS region transcription start site region 139584
Tssr139585 16 95258310 to 95258333 23 + TSS region transcription start site region 139585
Tssr139586 16 95258339 to 95258371 32 + TSS region transcription start site region 139586
Tssr139587 16 95258372 to 95258397 25 + TSS region transcription start site region 139587
Tssr142252 16 95259610 to 95259622 12 - TSS region transcription start site region 142252
Tssr142253 16 95259698 to 95259710 12 - TSS region transcription start site region 142253
Tssr139588 16 95278508 to 95278523 15 + TSS region transcription start site region 139588
Tssr139589 16 95278528 to 95278541 13 + TSS region transcription start site region 139589
Tssr139590 16 95278558 to 95278567 9 + TSS region transcription start site region 139590
Tssr139591 16 95279354 to 95279367 13 + TSS region transcription start site region 139591
Tssr142254 16 95290475 to 95290479 4 - TSS region transcription start site region 142254
Tssr139592 16 95293101 to 95293110 9 + TSS region transcription start site region 139592
Tssr139593 16 95296922 to 95296941 19 + TSS region transcription start site region 139593
Gm49643 16 95297356 to 95301661 4305 - antisense lncRNA gene predicted gene, 49643
Tssr139594 16 95297890 to 95297900 10 + TSS region transcription start site region 139594
Tssr139595 16 95297963 to 95297985 22 + TSS region transcription start site region 139595
Tssr139596 16 95298694 to 95298715 21 + TSS region transcription start site region 139596
Tssr139597 16 95298797 to 95298820 23 + TSS region transcription start site region 139597
D16Jhu40 16 95307984 to 95308261 277 DNA segment DNA segment, Chr 16, Johns Hopkins University 40
Cpgi8510 16 95341404 to 95341776 372 CpG island CpG island 8510
Tssr142255 16 95349769 to 95349782 13 - TSS region transcription start site region 142255
Tssr142256 16 95349799 to 95349807 8 - TSS region transcription start site region 142256
MHAa83a1.seq 16 95354581 to 95354770 189 DNA segment DNA segment, Chr 16, MHAa83a1.seq
Erg 16 95359169 to 95586593 227424 - protein coding gene ETS transcription factor
Tssr142257 16 95359404 to 95359417 13 - TSS region transcription start site region 142257
Tssr4969 16 95454989 to 95455026 37 + TSS region transcription start site region 4969
Tssr139598 16 95455137 to 95455145 8 + TSS region transcription start site region 139598
Tssr142258 16 95459017 to 95459023 6 - TSS region transcription start site region 142258
Tssr142259 16 95459059 to 95459098 39 - TSS region transcription start site region 142259
Tssr142260 16 95459282 to 95459384 102 - TSS region transcription start site region 142260
Tssr4970 16 95464593 to 95464613 20 - TSS region transcription start site region 4970
D16Jhu41 16 95479430 to 95479646 216 DNA segment DNA segment, Chr 16, Johns Hopkins University 41
D16Jhu42 16 95501693 to 95502084 391 DNA segment DNA segment, Chr 16, Johns Hopkins University 42
Cpgi8512 16 95585177 to 95586124 947 CpG island CpG island 8512
Tssr4971 16 95585553 to 95585560 7 - TSS region transcription start site region 4971
Tssr142261 16 95585568 to 95585588 20 - TSS region transcription start site region 142261
Tssr142262 16 95585625 to 95585643 18 - TSS region transcription start site region 142262
Tssr142263 16 95586585 to 95586595 10 - TSS region transcription start site region 142263
D16Jhu44 16 95593988 to 95594276 288 DNA segment DNA segment, Chr 16, Johns Hopkins University 44