Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:94008882-94433571

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr139535 16 94010860 to 94010884 24 + TSS region transcription start site region 139535
Tssr139536 16 94010934 to 94010943 9 + TSS region transcription start site region 139536
Tssr139537 16 94010962 to 94010975 13 + TSS region transcription start site region 139537
Tssr139538 16 94011000 to 94011011 11 + TSS region transcription start site region 139538
2410003I16Rik 16 94011441 to 94012236 795 + lincRNA gene RIKEN cDNA 2410003I16 gene
Gm49619 16 94015942 to 94016324 382 + pseudogene predicted gene, 49619
Tssr4967 16 94027635 to 94027636 1 + TSS region transcription start site region 4967
Gm31175 16 94031633 to 94085105 53472 - lncRNA gene predicted gene, 31175
Cpgi8492 16 94079062 to 94079749 687 CpG island CpG island 8492
Gm49620 16 94081651 to 94083866 2215 - bidirectional promoter lncRNA gene predicted gene, 49620
Cpgi8493 16 94083331 to 94086247 2916 CpG island CpG island 8493
Tssr139539 16 94084917 to 94084934 17 + TSS region transcription start site region 139539
Sim2 16 94085191 to 94127032 41841 + protein coding gene single-minded family bHLH transcription factor 2
Tssr139540 16 94085226 to 94085250 24 + TSS region transcription start site region 139540
Cpgi8494 16 94086700 to 94087583 883 CpG island CpG island 8494
Cpgi8495 16 94094331 to 94095510 1179 CpG island CpG island 8495
D16Mit119 16 94120923 to 94121054 131 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 119
Cpgi8496 16 94125077 to 94126169 1092 CpG island CpG island 8496
Hlcs 16 94128882 to 94313571 184689 - protein coding gene holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
Gm23062 16 94169302 to 94169411 109 - miRNA gene predicted gene, 23062
Gm48979 16 94169326 to 94169659 333 - pseudogene predicted gene, 48979
Gm48984 16 94174541 to 94179198 4657 + antisense lncRNA gene predicted gene, 48984
Cpgi8497 16 94185504 to 94185666 162 CpG island CpG island 8497
Gm48978 16 94218021 to 94223012 4991 - unclassified gene predicted gene, 48978
Tssr142218 16 94222989 to 94222993 4 - TSS region transcription start site region 142218
Tssr142219 16 94223148 to 94223159 11 - TSS region transcription start site region 142219
Gm6363 16 94242274 to 94243347 1073 - pseudogene predicted gene 6363
Tssr142220 16 94246067 to 94246082 15 - TSS region transcription start site region 142220
D16Jhu35 16 94270637 to 94270782 145 DNA segment DNA segment, Chr 16, Johns Hopkins University 35
Cpgi8498 16 94289664 to 94290775 1111 CpG island CpG island 8498
Tssr142221 16 94290242 to 94290296 54 - TSS region transcription start site region 142221
Tssr142222 16 94291009 to 94291015 6 - TSS region transcription start site region 142222
Cpgi8499 16 94302875 to 94303225 350 CpG island CpG island 8499
Cpgi8500 16 94312753 to 94313925 1172 CpG island CpG island 8500
Tssr142223 16 94313556 to 94313577 21 - TSS region transcription start site region 142223
Tssr142224 16 94317879 to 94317919 40 - TSS region transcription start site region 142224
Cpgi8501 16 94327788 to 94328729 941 CpG island CpG island 8501
Tssr139541 16 94328392 to 94328411 19 + TSS region transcription start site region 139541
Ripply3 16 94328422 to 94336935 8513 + protein coding gene ripply transcriptional repressor 3
Tssr139542 16 94328424 to 94328439 15 + TSS region transcription start site region 139542
Gm31259 16 94338908 to 94343807 4899 + lncRNA gene predicted gene, 31259
D16Jhu36 16 94350844 to 94351065 221 DNA segment DNA segment, Chr 16, Johns Hopkins University 36
Pigp 16 94358763 to 94371015 12252 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class P
Gm15310 16 94358941 to 94359312 371 - pseudogene predicted gene 15310
Cpgi8502 16 94370085 to 94371834 1749 CpG island CpG island 8502
Tssr142225 16 94370450 to 94370553 103 - TSS region transcription start site region 142225
Ttc3 16 94370620 to 94469222 98602 + protein coding gene tetratricopeptide repeat domain 3
Tssr142226 16 94370647 to 94370694 47 - TSS region transcription start site region 142226
Tssr142227 16 94370695 to 94370748 53 - TSS region transcription start site region 142227
Tssr139543 16 94370731 to 94370784 53 + TSS region transcription start site region 139543
Tssr139544 16 94370786 to 94370807 21 + TSS region transcription start site region 139544
Tssr142228 16 94370967 to 94370990 23 - TSS region transcription start site region 142228
Tssr142229 16 94370994 to 94371019 25 - TSS region transcription start site region 142229
Tssr142230 16 94371832 to 94371848 16 - TSS region transcription start site region 142230
D16Jhu37 16 94374912 to 94375134 222 DNA segment DNA segment, Chr 16, Johns Hopkins University 37
Tssr139545 16 94410823 to 94410861 38 + TSS region transcription start site region 139545
Tssr139546 16 94420301 to 94420320 19 + TSS region transcription start site region 139546
Tssr139547 16 94425083 to 94425107 24 + TSS region transcription start site region 139547
Tssr139548 16 94426184 to 94426197 13 + TSS region transcription start site region 139548
Gm23692 16 94429073 to 94429232 159 + snRNA gene predicted gene, 23692