Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:93871080-94071092

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Morc3 16 93832121 to 93876073 43952 + protein coding gene microrchidia 3
2610034B04Rik 16 93882994 to 93884460 1466 unclassified gene RIKEN cDNA 2610034B04 gene
Cpgi8489 16 93883450 to 93884721 1271 CpG island CpG island 8489
Tssr139529 16 93883895 to 93883954 59 + TSS region transcription start site region 139529
Chaf1b 16 93883901 to 93906115 22214 + protein coding gene chromatin assembly factor 1, subunit B (p60)
Tssr139530 16 93883958 to 93883974 16 + TSS region transcription start site region 139530
Gm49617 16 93888734 to 93890147 1413 + sense intronic lncRNA gene predicted gene, 49617
Tssr142208 16 93912203 to 93912216 13 - TSS region transcription start site region 142208
Tssr139531 16 93912359 to 93912403 44 + TSS region transcription start site region 139531
Tssr142209 16 93914334 to 93914357 23 - TSS region transcription start site region 142209
Cldn14 16 93919031 to 94008837 89806 - protein coding gene claudin 14
Cpgi8490 16 93919205 to 93919874 669 CpG island CpG island 8490
Tssr139532 16 93929361 to 93929367 6 + TSS region transcription start site region 139532
Tssr142210 16 93929464 to 93929475 11 - TSS region transcription start site region 142210
Tssr142211 16 93929483 to 93929505 22 - TSS region transcription start site region 142211
Tssr142212 16 93929512 to 93929528 16 - TSS region transcription start site region 142212
Gm31012 16 93929656 to 93957722 28066 + lncRNA gene predicted gene, 31012
Cpgi8491 16 93934209 to 93934481 272 CpG island CpG island 8491
Tssr139533 16 93957799 to 93957802 3 + TSS region transcription start site region 139533
D16Jhu33 16 93965038 to 93965281 243 DNA segment DNA segment, Chr 16, Johns Hopkins University 33
Tssr142213 16 93971080 to 93971092 12 - TSS region transcription start site region 142213
Tssr142214 16 93971112 to 93971118 6 - TSS region transcription start site region 142214
Tssr142215 16 93971122 to 93971134 12 - TSS region transcription start site region 142215
Tssr139534 16 93973763 to 93973797 34 + TSS region transcription start site region 139534
Gm49618 16 93981444 to 93982588 1144 - sense intronic lncRNA gene predicted gene, 49618
Tssr142216 16 93982518 to 93982531 13 - TSS region transcription start site region 142216
Tssr142217 16 93982566 to 93982573 7 - TSS region transcription start site region 142217
Tssr139535 16 94010860 to 94010884 24 + TSS region transcription start site region 139535
Tssr139536 16 94010934 to 94010943 9 + TSS region transcription start site region 139536
Tssr139537 16 94010962 to 94010975 13 + TSS region transcription start site region 139537
Tssr139538 16 94011000 to 94011011 11 + TSS region transcription start site region 139538
2410003I16Rik 16 94011441 to 94012236 795 + lincRNA gene RIKEN cDNA 2410003I16 gene
Gm49619 16 94015942 to 94016324 382 + pseudogene predicted gene, 49619
Tssr4967 16 94027635 to 94027636 1 + TSS region transcription start site region 4967
Gm31175 16 94031633 to 94085105 53472 - lncRNA gene predicted gene, 31175