Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:93382695-93833419

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700029J03Rik 16 93396815 to 93458872 62057 - lincRNA gene RIKEN cDNA 1700029J03 gene
Tssr4964 16 93424276 to 93424280 4 + TSS region transcription start site region 4964
D16Jhu24 16 93451624 to 93451835 211 DNA segment DNA segment, Chr 16, Johns Hopkins University 24
Cpgi8478 16 93458314 to 93458570 256 CpG island CpG island 8478
Gm30695 16 93472167 to 93487074 14907 - lincRNA gene predicted gene, 30695
Cpgi8479 16 93489460 to 93489970 510 CpG island CpG island 8479
Tssr142194 16 93490287 to 93490294 7 - TSS region transcription start site region 142194
D16Jhu25 16 93527179 to 93527374 195 DNA segment DNA segment, Chr 16, Johns Hopkins University 25
Gm49725 16 93532388 to 93534042 1654 + lincRNA gene predicted gene, 49725
Tssr139504 16 93532408 to 93532427 19 + TSS region transcription start site region 139504
Tssr4965 16 93547775 to 93547779 4 + TSS region transcription start site region 4965
Setd4 16 93583457 to 93604063 20606 - protein coding gene SET domain containing 4
Tssr142195 16 93586561 to 93586594 33 - TSS region transcription start site region 142195
Tssr139505 16 93591159 to 93591185 26 + TSS region transcription start site region 139505
Gm49961 16 93591401 to 93597760 6359 + antisense lncRNA gene predicted gene, 49961
Tssr142196 16 93598360 to 93598361 1 - TSS region transcription start site region 142196
Cpgi8480 16 93603514 to 93604290 776 CpG island CpG island 8480
Gm9510 16 93603762 to 93604967 1205 unclassified gene predicted gene 9510
Tssr139506 16 93603831 to 93603847 16 + TSS region transcription start site region 139506
Tssr142197 16 93604040 to 93604077 37 - TSS region transcription start site region 142197
Tssr142198 16 93604783 to 93604798 15 - TSS region transcription start site region 142198
Cpgi8481 16 93607695 to 93608419 724 CpG island CpG island 8481
Tssr139507 16 93607816 to 93607829 13 + TSS region transcription start site region 139507
Tssr139508 16 93607831 to 93607896 65 + TSS region transcription start site region 139508
Cbr1 16 93607837 to 93610349 2512 + protein coding gene carbonyl reductase 1
Del(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 cytogenetic marker deletion, Chr16, R H Reeves 1
Dp(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 chromosomal duplication duplication, Chr 16, H R Reeves 1
Tssr139509 16 93607904 to 93607919 15 + TSS region transcription start site region 139509
Tssr139510 16 93628025 to 93628043 18 + TSS region transcription start site region 139510
Cpgi8482 16 93628067 to 93628381 314 CpG island CpG island 8482
Gm5678 16 93628097 to 93630451 2354 + pseudogene predicted gene 5678
Cpgi8483 16 93653025 to 93653369 344 CpG island CpG island 8483
Gm45384 16 93653088 to 93653364 276 + pseudogene predicted gene 45384
Gm22344 16 93654324 to 93654601 277 + unclassified non-coding RNA gene predicted gene, 22344
Tssr139511 16 93676421 to 93676424 3 + TSS region transcription start site region 139511
Cpgi8484 16 93682692 to 93684102 1410 CpG island CpG island 8484
Tssr139512 16 93683003 to 93683024 21 + TSS region transcription start site region 139512
Tssr139513 16 93683184 to 93683223 39 + TSS region transcription start site region 139513
Cbr3 16 93683219 to 93690991 7772 + protein coding gene carbonyl reductase 3
Tssr139514 16 93683229 to 93683249 20 + TSS region transcription start site region 139514
D16Jhu28 16 93688325 to 93688561 236 DNA segment DNA segment, Chr 16, Johns Hopkins University 28
D16Jhu29 16 93690239 to 93690357 118 DNA segment DNA segment, Chr 16, Johns Hopkins University 29
Cpgi8485 16 93690505 to 93690679 174 CpG island CpG island 8485
Gm41501 16 93705336 to 93710145 4809 + lncRNA gene predicted gene, 41501
Tssr142199 16 93711267 to 93711270 3 - TSS region transcription start site region 142199
Cpgi8486 16 93711424 to 93712464 1040 CpG island CpG island 8486
Dop1b 16 93711907 to 93810588 98681 + protein coding gene DOP1 leucine zipper like protein B
Tssr139515 16 93711912 to 93711921 9 + TSS region transcription start site region 139515
Tssr139516 16 93711924 to 93711937 13 + TSS region transcription start site region 139516
Tssr139517 16 93711952 to 93712008 56 + TSS region transcription start site region 139517
Tssr142200 16 93712424 to 93712427 3 - TSS region transcription start site region 142200
Tssr142201 16 93721899 to 93721905 6 - TSS region transcription start site region 142201
Tssr4966 16 93730114 to 93730145 31 + TSS region transcription start site region 4966
D16Mit204 16 93742795 to 93742927 132 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 204
Tssr142202 16 93751942 to 93751950 8 - TSS region transcription start site region 142202
Cpgi8487 16 93769775 to 93769926 151 CpG island CpG island 8487
Tssr139518 16 93776709 to 93776723 14 + TSS region transcription start site region 139518
Tssr139519 16 93777208 to 93777219 11 + TSS region transcription start site region 139519
Tssr139520 16 93777241 to 93777265 24 + TSS region transcription start site region 139520
Tssr139521 16 93778722 to 93778736 14 + TSS region transcription start site region 139521
Tssr139522 16 93780945 to 93780980 35 + TSS region transcription start site region 139522
Tssr139523 16 93788690 to 93788711 21 + TSS region transcription start site region 139523
2310043M15Rik 16 93793238 to 93795206 1968 - antisense lncRNA gene RIKEN cDNA 2310043M15 gene
Tssr142203 16 93794835 to 93794845 10 - TSS region transcription start site region 142203
Tssr142204 16 93794882 to 93794918 36 - TSS region transcription start site region 142204
Tssr142205 16 93795024 to 93795065 41 - TSS region transcription start site region 142205
D16Jhu30 16 93798788 to 93798962 174 DNA segment DNA segment, Chr 16, Johns Hopkins University 30
Tssr139524 16 93798855 to 93798904 49 + TSS region transcription start site region 139524
Gm30881 16 93808540 to 93833019 24479 - antisense lncRNA gene predicted gene, 30881
Tssr139525 16 93809427 to 93809443 16 + TSS region transcription start site region 139525
Tssr142206 16 93816388 to 93816404 16 - TSS region transcription start site region 142206
Cpgi8488 16 93831816 to 93833123 1307 CpG island CpG island 8488
Morc3 16 93832121 to 93876073 43952 + protein coding gene microrchidia 3
Tssr139526 16 93832221 to 93832308 87 + TSS region transcription start site region 139526
Tssr142207 16 93833003 to 93833049 46 - TSS region transcription start site region 142207
Tssr139527 16 93833271 to 93833277 6 + TSS region transcription start site region 139527