Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:93143882-95298571

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288 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(16Tiam1-Kcnj6)6Yey 16 89787111 to 94997696 5210585 chromosomal duplication duplication, Chr 16, Y Eugene Yu 6
Del(16Tiam1-Kcnj6)7Yey 16 89787111 to 94997696 5210585 chromosomal deletion deletion, Chr 16, Y Eugene Yu 7
Tssr139499 16 93144328 to 93144340 12 + TSS region transcription start site region 139499
Tssr142187 16 93147699 to 93147710 11 - TSS region transcription start site region 142187
Tssr142188 16 93150440 to 93150444 4 - TSS region transcription start site region 142188
Tssr139500 16 93153054 to 93153070 16 + TSS region transcription start site region 139500
Tssr139501 16 93153299 to 93153333 34 + TSS region transcription start site region 139501
Tssr142189 16 93154058 to 93154071 13 - TSS region transcription start site region 142189
Gm30530 16 93184202 to 93193795 9593 - lncRNA gene predicted gene, 30530
41.MHAa75d5.seq 16 93218782 to 93218944 162 DNA segment DNA segment, Chr 16, 41.MHAa75d5.seq
Gm30588 16 93262363 to 93263467 1104 + lncRNA gene predicted gene, 30588
D16Jhu21 16 93292910 to 93293137 227 DNA segment DNA segment, Chr 16, Johns Hopkins University 21
1810053B23Rik 16 93343716 to 93359543 15827 - lncRNA gene RIKEN cDNA 1810053B23 gene
D16Jhu22 16 93352647 to 93352812 165 DNA segment DNA segment, Chr 16, Johns Hopkins University 22
Tssr142190 16 93354073 to 93354086 13 - TSS region transcription start site region 142190
Tssr142191 16 93358710 to 93358730 20 - TSS region transcription start site region 142191
Tssr142192 16 93359536 to 93359550 14 - TSS region transcription start site region 142192
Tssr142193 16 93365319 to 93365343 24 - TSS region transcription start site region 142193
1810044K17Rik 16 93368239 to 93369029 790 + lincRNA gene RIKEN cDNA 1810044K17 gene
Tssr139502 16 93368253 to 93368267 14 + TSS region transcription start site region 139502
Tssr139503 16 93368414 to 93368431 17 + TSS region transcription start site region 139503
Mir802 16 93369720 to 93369816 96 + miRNA gene microRNA 802
1700029J03Rik 16 93396815 to 93458872 62057 - lincRNA gene RIKEN cDNA 1700029J03 gene
Tssr4964 16 93424276 to 93424280 4 + TSS region transcription start site region 4964
D16Jhu24 16 93451624 to 93451835 211 DNA segment DNA segment, Chr 16, Johns Hopkins University 24
Cpgi8478 16 93458314 to 93458570 256 CpG island CpG island 8478
Gm30695 16 93472167 to 93487074 14907 - lincRNA gene predicted gene, 30695
Cpgi8479 16 93489460 to 93489970 510 CpG island CpG island 8479
Tssr142194 16 93490287 to 93490294 7 - TSS region transcription start site region 142194
D16Jhu25 16 93527179 to 93527374 195 DNA segment DNA segment, Chr 16, Johns Hopkins University 25
Gm49725 16 93532388 to 93534042 1654 + lincRNA gene predicted gene, 49725
Tssr139504 16 93532408 to 93532427 19 + TSS region transcription start site region 139504
Tssr4965 16 93547775 to 93547779 4 + TSS region transcription start site region 4965
Setd4 16 93583457 to 93604063 20606 - protein coding gene SET domain containing 4
Tssr142195 16 93586561 to 93586594 33 - TSS region transcription start site region 142195
Tssr139505 16 93591159 to 93591185 26 + TSS region transcription start site region 139505
Gm49961 16 93591401 to 93597760 6359 + antisense lncRNA gene predicted gene, 49961
Tssr142196 16 93598360 to 93598361 1 - TSS region transcription start site region 142196
Cpgi8480 16 93603514 to 93604290 776 CpG island CpG island 8480
Gm9510 16 93603762 to 93604967 1205 unclassified gene predicted gene 9510
Tssr139506 16 93603831 to 93603847 16 + TSS region transcription start site region 139506
Tssr142197 16 93604040 to 93604077 37 - TSS region transcription start site region 142197
Tssr142198 16 93604783 to 93604798 15 - TSS region transcription start site region 142198
Cpgi8481 16 93607695 to 93608419 724 CpG island CpG island 8481
Tssr139507 16 93607816 to 93607829 13 + TSS region transcription start site region 139507
Tssr139508 16 93607831 to 93607896 65 + TSS region transcription start site region 139508
Del(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 cytogenetic marker deletion, Chr16, R H Reeves 1
Dp(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 chromosomal duplication duplication, Chr 16, H R Reeves 1
Cbr1 16 93607837 to 93610349 2512 + protein coding gene carbonyl reductase 1
Tssr139509 16 93607904 to 93607919 15 + TSS region transcription start site region 139509
Tssr139510 16 93628025 to 93628043 18 + TSS region transcription start site region 139510
Cpgi8482 16 93628067 to 93628381 314 CpG island CpG island 8482
Gm5678 16 93628097 to 93630451 2354 + pseudogene predicted gene 5678
Cpgi8483 16 93653025 to 93653369 344 CpG island CpG island 8483
Gm45384 16 93653088 to 93653364 276 + pseudogene predicted gene 45384
Gm22344 16 93654324 to 93654601 277 + unclassified non-coding RNA gene predicted gene, 22344
Tssr139511 16 93676421 to 93676424 3 + TSS region transcription start site region 139511
Cpgi8484 16 93682692 to 93684102 1410 CpG island CpG island 8484
Tssr139512 16 93683003 to 93683024 21 + TSS region transcription start site region 139512
Tssr139513 16 93683184 to 93683223 39 + TSS region transcription start site region 139513
Cbr3 16 93683219 to 93690991 7772 + protein coding gene carbonyl reductase 3
Tssr139514 16 93683229 to 93683249 20 + TSS region transcription start site region 139514
D16Jhu28 16 93688325 to 93688561 236 DNA segment DNA segment, Chr 16, Johns Hopkins University 28
D16Jhu29 16 93690239 to 93690357 118 DNA segment DNA segment, Chr 16, Johns Hopkins University 29
Cpgi8485 16 93690505 to 93690679 174 CpG island CpG island 8485
Gm41501 16 93705336 to 93710145 4809 + lncRNA gene predicted gene, 41501
Tssr142199 16 93711267 to 93711270 3 - TSS region transcription start site region 142199
Cpgi8486 16 93711424 to 93712464 1040 CpG island CpG island 8486
Dop1b 16 93711907 to 93810588 98681 + protein coding gene DOP1 leucine zipper like protein B
Tssr139515 16 93711912 to 93711921 9 + TSS region transcription start site region 139515
Tssr139516 16 93711924 to 93711937 13 + TSS region transcription start site region 139516
Tssr139517 16 93711952 to 93712008 56 + TSS region transcription start site region 139517
Tssr142200 16 93712424 to 93712427 3 - TSS region transcription start site region 142200
Tssr142201 16 93721899 to 93721905 6 - TSS region transcription start site region 142201
Tssr4966 16 93730114 to 93730145 31 + TSS region transcription start site region 4966
D16Mit204 16 93742795 to 93742927 132 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 204
Tssr142202 16 93751942 to 93751950 8 - TSS region transcription start site region 142202
Cpgi8487 16 93769775 to 93769926 151 CpG island CpG island 8487
Tssr139518 16 93776709 to 93776723 14 + TSS region transcription start site region 139518
Tssr139519 16 93777208 to 93777219 11 + TSS region transcription start site region 139519
Tssr139520 16 93777241 to 93777265 24 + TSS region transcription start site region 139520
Tssr139521 16 93778722 to 93778736 14 + TSS region transcription start site region 139521
Tssr139522 16 93780945 to 93780980 35 + TSS region transcription start site region 139522
Tssr139523 16 93788690 to 93788711 21 + TSS region transcription start site region 139523
2310043M15Rik 16 93793238 to 93795206 1968 - antisense lncRNA gene RIKEN cDNA 2310043M15 gene
Tssr142203 16 93794835 to 93794845 10 - TSS region transcription start site region 142203
Tssr142204 16 93794882 to 93794918 36 - TSS region transcription start site region 142204
Tssr142205 16 93795024 to 93795065 41 - TSS region transcription start site region 142205
D16Jhu30 16 93798788 to 93798962 174 DNA segment DNA segment, Chr 16, Johns Hopkins University 30
Tssr139524 16 93798855 to 93798904 49 + TSS region transcription start site region 139524
Gm30881 16 93808540 to 93833019 24479 - antisense lncRNA gene predicted gene, 30881
Tssr139525 16 93809427 to 93809443 16 + TSS region transcription start site region 139525
Tssr142206 16 93816388 to 93816404 16 - TSS region transcription start site region 142206
Cpgi8488 16 93831816 to 93833123 1307 CpG island CpG island 8488
Morc3 16 93832121 to 93876073 43952 + protein coding gene microrchidia 3
Tssr139526 16 93832221 to 93832308 87 + TSS region transcription start site region 139526
Tssr142207 16 93833003 to 93833049 46 - TSS region transcription start site region 142207
Tssr139527 16 93833271 to 93833277 6 + TSS region transcription start site region 139527
D16Jhu31e 16 93862507 to 93862823 316 DNA segment DNA segment, Chr 16, Johns Hopkins University 31, expressed
Tssr139528 16 93864447 to 93864451 4 + TSS region transcription start site region 139528
2610034B04Rik 16 93882994 to 93884460 1466 unclassified gene RIKEN cDNA 2610034B04 gene
Cpgi8489 16 93883450 to 93884721 1271 CpG island CpG island 8489
Tssr139529 16 93883895 to 93883954 59 + TSS region transcription start site region 139529
Chaf1b 16 93883901 to 93906115 22214 + protein coding gene chromatin assembly factor 1, subunit B (p60)
Tssr139530 16 93883958 to 93883974 16 + TSS region transcription start site region 139530
Gm49617 16 93888734 to 93890147 1413 + sense intronic lncRNA gene predicted gene, 49617
Tssr142208 16 93912203 to 93912216 13 - TSS region transcription start site region 142208
Tssr139531 16 93912359 to 93912403 44 + TSS region transcription start site region 139531
Tssr142209 16 93914334 to 93914357 23 - TSS region transcription start site region 142209
Cldn14 16 93919031 to 94008837 89806 - protein coding gene claudin 14
Cpgi8490 16 93919205 to 93919874 669 CpG island CpG island 8490
Tssr139532 16 93929361 to 93929367 6 + TSS region transcription start site region 139532
Tssr142210 16 93929464 to 93929475 11 - TSS region transcription start site region 142210
Tssr142211 16 93929483 to 93929505 22 - TSS region transcription start site region 142211
Tssr142212 16 93929512 to 93929528 16 - TSS region transcription start site region 142212
Gm31012 16 93929656 to 93957722 28066 + lncRNA gene predicted gene, 31012
Cpgi8491 16 93934209 to 93934481 272 CpG island CpG island 8491
Tssr139533 16 93957799 to 93957802 3 + TSS region transcription start site region 139533
D16Jhu33 16 93965038 to 93965281 243 DNA segment DNA segment, Chr 16, Johns Hopkins University 33
Tssr142213 16 93971080 to 93971092 12 - TSS region transcription start site region 142213
Tssr142214 16 93971112 to 93971118 6 - TSS region transcription start site region 142214
Tssr142215 16 93971122 to 93971134 12 - TSS region transcription start site region 142215
Tssr139534 16 93973763 to 93973797 34 + TSS region transcription start site region 139534
Gm49618 16 93981444 to 93982588 1144 - sense intronic lncRNA gene predicted gene, 49618
Tssr142216 16 93982518 to 93982531 13 - TSS region transcription start site region 142216
Tssr142217 16 93982566 to 93982573 7 - TSS region transcription start site region 142217
Tssr139535 16 94010860 to 94010884 24 + TSS region transcription start site region 139535
Tssr139536 16 94010934 to 94010943 9 + TSS region transcription start site region 139536
Tssr139537 16 94010962 to 94010975 13 + TSS region transcription start site region 139537
Tssr139538 16 94011000 to 94011011 11 + TSS region transcription start site region 139538
2410003I16Rik 16 94011441 to 94012236 795 + lincRNA gene RIKEN cDNA 2410003I16 gene
Gm49619 16 94015942 to 94016324 382 + pseudogene predicted gene, 49619
Tssr4967 16 94027635 to 94027636 1 + TSS region transcription start site region 4967
Gm31175 16 94031633 to 94085105 53472 - lncRNA gene predicted gene, 31175
Cpgi8492 16 94079062 to 94079749 687 CpG island CpG island 8492
Gm49620 16 94081651 to 94083866 2215 - bidirectional promoter lncRNA gene predicted gene, 49620
Cpgi8493 16 94083331 to 94086247 2916 CpG island CpG island 8493
Tssr139539 16 94084917 to 94084934 17 + TSS region transcription start site region 139539
Sim2 16 94085191 to 94127032 41841 + protein coding gene single-minded family bHLH transcription factor 2
Tssr139540 16 94085226 to 94085250 24 + TSS region transcription start site region 139540
Cpgi8494 16 94086700 to 94087583 883 CpG island CpG island 8494
Cpgi8495 16 94094331 to 94095510 1179 CpG island CpG island 8495
D16Mit119 16 94120923 to 94121054 131 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 119
Cpgi8496 16 94125077 to 94126169 1092 CpG island CpG island 8496
Hlcs 16 94128882 to 94313571 184689 - protein coding gene holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
Gm23062 16 94169302 to 94169411 109 - miRNA gene predicted gene, 23062
Gm48979 16 94169326 to 94169659 333 - pseudogene predicted gene, 48979
Gm48984 16 94174541 to 94179198 4657 + antisense lncRNA gene predicted gene, 48984
Cpgi8497 16 94185504 to 94185666 162 CpG island CpG island 8497
Gm48978 16 94218021 to 94223012 4991 - unclassified gene predicted gene, 48978
Tssr142218 16 94222989 to 94222993 4 - TSS region transcription start site region 142218
Tssr142219 16 94223148 to 94223159 11 - TSS region transcription start site region 142219
Gm6363 16 94242274 to 94243347 1073 - pseudogene predicted gene 6363
Tssr142220 16 94246067 to 94246082 15 - TSS region transcription start site region 142220
D16Jhu35 16 94270637 to 94270782 145 DNA segment DNA segment, Chr 16, Johns Hopkins University 35
Cpgi8498 16 94289664 to 94290775 1111 CpG island CpG island 8498
Tssr142221 16 94290242 to 94290296 54 - TSS region transcription start site region 142221
Tssr142222 16 94291009 to 94291015 6 - TSS region transcription start site region 142222
Cpgi8499 16 94302875 to 94303225 350 CpG island CpG island 8499
Cpgi8500 16 94312753 to 94313925 1172 CpG island CpG island 8500
Tssr142223 16 94313556 to 94313577 21 - TSS region transcription start site region 142223
Tssr142224 16 94317879 to 94317919 40 - TSS region transcription start site region 142224
Cpgi8501 16 94327788 to 94328729 941 CpG island CpG island 8501
Tssr139541 16 94328392 to 94328411 19 + TSS region transcription start site region 139541
Ripply3 16 94328422 to 94336935 8513 + protein coding gene ripply transcriptional repressor 3
Tssr139542 16 94328424 to 94328439 15 + TSS region transcription start site region 139542
Gm31259 16 94338908 to 94343807 4899 + lncRNA gene predicted gene, 31259
D16Jhu36 16 94350844 to 94351065 221 DNA segment DNA segment, Chr 16, Johns Hopkins University 36
Pigp 16 94358763 to 94371015 12252 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class P
Gm15310 16 94358941 to 94359312 371 - pseudogene predicted gene 15310
Cpgi8502 16 94370085 to 94371834 1749 CpG island CpG island 8502
Tssr142225 16 94370450 to 94370553 103 - TSS region transcription start site region 142225
Ttc3 16 94370620 to 94469222 98602 + protein coding gene tetratricopeptide repeat domain 3
Tssr142226 16 94370647 to 94370694 47 - TSS region transcription start site region 142226
Tssr142227 16 94370695 to 94370748 53 - TSS region transcription start site region 142227
Tssr139543 16 94370731 to 94370784 53 + TSS region transcription start site region 139543
Tssr139544 16 94370786 to 94370807 21 + TSS region transcription start site region 139544
Tssr142228 16 94370967 to 94370990 23 - TSS region transcription start site region 142228
Tssr142229 16 94370994 to 94371019 25 - TSS region transcription start site region 142229
Tssr142230 16 94371832 to 94371848 16 - TSS region transcription start site region 142230
D16Jhu37 16 94374912 to 94375134 222 DNA segment DNA segment, Chr 16, Johns Hopkins University 37
Tssr139545 16 94410823 to 94410861 38 + TSS region transcription start site region 139545
Tssr139546 16 94420301 to 94420320 19 + TSS region transcription start site region 139546
Tssr139547 16 94425083 to 94425107 24 + TSS region transcription start site region 139547
Tssr139548 16 94426184 to 94426197 13 + TSS region transcription start site region 139548
Gm23692 16 94429073 to 94429232 159 + snRNA gene predicted gene, 23692
Tssr139549 16 94442581 to 94442599 18 + TSS region transcription start site region 139549
Tssr139550 16 94448108 to 94448119 11 + TSS region transcription start site region 139550
Tssr139551 16 94454411 to 94454452 41 + TSS region transcription start site region 139551
Tssr139552 16 94454472 to 94454484 12 + TSS region transcription start site region 139552
Tssr139553 16 94459953 to 94459966 13 + TSS region transcription start site region 139553
Tssr139554 16 94468497 to 94468501 4 + TSS region transcription start site region 139554
Gm31323 16 94488777 to 94522117 33340 + antisense lncRNA gene predicted gene, 31323
Vps26c 16 94497724 to 94526629 28905 - protein coding gene VPS26 endosomal protein sorting factor C
Tssr142231 16 94498647 to 94498677 30 - TSS region transcription start site region 142231
Tssr139555 16 94502463 to 94502470 7 + TSS region transcription start site region 139555
4930586H24Rik 16 94521597 to 94522308 711 unclassified gene RIKEN cDNA 4930586H24 gene
Cpgi8503 16 94525944 to 94527331 1387 CpG island CpG island 8503
Tssr142232 16 94526396 to 94526451 55 - TSS region transcription start site region 142232
Tssr142233 16 94526830 to 94526839 9 - TSS region transcription start site region 142233