Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:92427647-94277812

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272 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aod1a 16 35626273 to 92776120 57149847 QTL autoimmune ovarian dysgenesis 1a
Del(16App-Runx1)5Yah 16 84952666 to 92826074 7873408 chromosomal deletion deletion, Chr 16, Yann Herault 5
Rcan1 16 92391951 to 92466169 74218 - protein coding gene regulator of calcineurin 1
Gm41498 16 92426171 to 92434060 7889 - lncRNA gene predicted gene, 41498
Tssr142127 16 92434517 to 92434527 10 - TSS region transcription start site region 142127
Gm46556 16 92452475 to 92456321 3846 + lncRNA gene predicted gene, 46556
Gm46555 16 92457477 to 92462490 5013 + antisense lncRNA gene predicted gene, 46555
Cpgi8470 16 92465432 to 92466690 1258 CpG island CpG island 8470
Tssr142128 16 92466081 to 92466187 106 - TSS region transcription start site region 142128
Tssr142129 16 92466247 to 92466274 27 - TSS region transcription start site region 142129
Tssr139475 16 92470928 to 92470968 40 + TSS region transcription start site region 139475
Cpgi8471 16 92478619 to 92478954 335 CpG island CpG island 8471
2410124H12Rik 16 92478742 to 92497365 18623 + sense overlapping lncRNA gene RIKEN cDNA 2410124H12 gene
Tssr139476 16 92485705 to 92485736 31 + TSS region transcription start site region 139476
Tssr139477 16 92498085 to 92498094 9 + TSS region transcription start site region 139477
Tssr139478 16 92498113 to 92498118 5 + TSS region transcription start site region 139478
Tssr139479 16 92498122 to 92498175 53 + TSS region transcription start site region 139479
Clic6 16 92498147 to 92541241 43094 + protein coding gene chloride intracellular channel 6
Tssr139480 16 92498210 to 92498219 9 + TSS region transcription start site region 139480
Cpgi8472 16 92498339 to 92499619 1280 CpG island CpG island 8472
Tssr139481 16 92498608 to 92498618 10 + TSS region transcription start site region 139481
Tssr139482 16 92498673 to 92498742 69 + TSS region transcription start site region 139482
Tssr139483 16 92498765 to 92498824 59 + TSS region transcription start site region 139483
Tssr139484 16 92519053 to 92519077 24 + TSS region transcription start site region 139484
Tssr142130 16 92522046 to 92522053 7 - TSS region transcription start site region 142130
Tssr139485 16 92538986 to 92538987 1 + TSS region transcription start site region 139485
Tssr139486 16 92539879 to 92539882 3 + TSS region transcription start site region 139486
Gm49722 16 92549113 to 92553143 4030 - lincRNA gene predicted gene, 49722
Gm30224 16 92584375 to 92596158 11783 - lncRNA gene predicted gene, 30224
Tssr142131 16 92596113 to 92596126 13 - TSS region transcription start site region 142131
Tssr142132 16 92596146 to 92596155 9 - TSS region transcription start site region 142132
Runx1 16 92601466 to 92826074 224608 - protein coding gene runt related transcription factor 1
Tssr142133 16 92603049 to 92603094 45 - TSS region transcription start site region 142133
Tssr142134 16 92603150 to 92603165 15 - TSS region transcription start site region 142134
Tssr142135 16 92603186 to 92603199 13 - TSS region transcription start site region 142135
Tssr142136 16 92603220 to 92603229 9 - TSS region transcription start site region 142136
Tssr142137 16 92603254 to 92603265 11 - TSS region transcription start site region 142137
Tssr142138 16 92603298 to 92603311 13 - TSS region transcription start site region 142138
Cpgi8473 16 92605532 to 92606235 703 CpG island CpG island 8473
Tssr139487 16 92612755 to 92612776 21 + TSS region transcription start site region 139487
Gm26626 16 92612814 to 92620105 7291 + antisense lncRNA gene predicted gene, 26626
Tssr139488 16 92612856 to 92612879 23 + TSS region transcription start site region 139488
Tssr142139 16 92620760 to 92620773 13 - TSS region transcription start site region 142139
Tssr4961 16 92621285 to 92621289 4 + TSS region transcription start site region 4961
Tssr142140 16 92644213 to 92644252 39 - TSS region transcription start site region 142140
D16Mit128 16 92646457 to 92646578 121 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 128
Tssr142141 16 92646781 to 92646785 4 - TSS region transcription start site region 142141
D16Mit52 16 92676374 to 92676489 115 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 52
Tssr142142 16 92677468 to 92677472 4 - TSS region transcription start site region 142142
2900022M12Rik 16 92684222 to 92687239 3017 unclassified gene RIKEN cDNA 2900022M12 gene
A630044M17Rik 16 92691405 to 92694945 3540 unclassified gene RIKEN cDNA A630044M17 gene
Tssr142143 16 92694922 to 92694926 4 - TSS region transcription start site region 142143
Tssr142144 16 92695066 to 92695089 23 - TSS region transcription start site region 142144
Tssr142145 16 92695218 to 92695231 13 - TSS region transcription start site region 142145
Cpgi8474 16 92695291 to 92695988 697 CpG island CpG island 8474
Cpgi8475 16 92696644 to 92699157 2513 CpG island CpG island 8475
Tssr142146 16 92697109 to 92697117 8 - TSS region transcription start site region 142146
Tssr142147 16 92697315 to 92697347 32 - TSS region transcription start site region 142147
Cpgi8476 16 92699827 to 92700052 225 CpG island CpG island 8476
A430042E23Rik 16 92726177 to 92729510 3333 unclassified gene RIKEN cDNA A430042E23 gene
Tssr142148 16 92727214 to 92727218 4 - TSS region transcription start site region 142148
Tssr142149 16 92739498 to 92739499 1 - TSS region transcription start site region 142149
Gm30281 16 92761922 to 92767240 5318 + lncRNA gene predicted gene, 30281
Tssr142150 16 92762162 to 92762173 11 - TSS region transcription start site region 142150
Tssr142151 16 92775297 to 92775302 5 - TSS region transcription start site region 142151
D16Mit51 16 92775966 to 92776120 154 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 51
Tssr142152 16 92776112 to 92776130 18 - TSS region transcription start site region 142152
Tssr142153 16 92776498 to 92776515 17 - TSS region transcription start site region 142153
Tssr142154 16 92776838 to 92776847 9 - TSS region transcription start site region 142154
Tssr142155 16 92776872 to 92776885 13 - TSS region transcription start site region 142155
Tssr142156 16 92789347 to 92789352 5 - TSS region transcription start site region 142156
Tssr142157 16 92792295 to 92792303 8 - TSS region transcription start site region 142157
Tssr142158 16 92793946 to 92793954 8 - TSS region transcription start site region 142158
Tssr142159 16 92797349 to 92797381 32 - TSS region transcription start site region 142159
Tssr142160 16 92801441 to 92801490 49 - TSS region transcription start site region 142160
Cpgi8477 16 92801635 to 92801822 187 CpG island CpG island 8477
Tssr142161 16 92808965 to 92808981 16 - TSS region transcription start site region 142161
Tssr142162 16 92817030 to 92817055 25 - TSS region transcription start site region 142162
Tssr142163 16 92817926 to 92817940 14 - TSS region transcription start site region 142163
Tssr139489 16 92818803 to 92818814 11 + TSS region transcription start site region 139489
Tssr142164 16 92822064 to 92822069 5 - TSS region transcription start site region 142164
Tssr139490 16 92823839 to 92823853 14 + TSS region transcription start site region 139490
Tssr142165 16 92824476 to 92824507 31 - TSS region transcription start site region 142165
Tssr139491 16 92824599 to 92824613 14 + TSS region transcription start site region 139491
Tssr139492 16 92824631 to 92824639 8 + TSS region transcription start site region 139492
Tssr142166 16 92825535 to 92825548 13 - TSS region transcription start site region 142166
Tssr142167 16 92825561 to 92825572 11 - TSS region transcription start site region 142167
Tssr142168 16 92825605 to 92825641 36 - TSS region transcription start site region 142168
Tssr142169 16 92825751 to 92825766 15 - TSS region transcription start site region 142169
Tssr142170 16 92825771 to 92825782 11 - TSS region transcription start site region 142170
Tssr142171 16 92825791 to 92825821 30 - TSS region transcription start site region 142171
Tssr142172 16 92825835 to 92825846 11 - TSS region transcription start site region 142172
Tssr142173 16 92825922 to 92825931 9 - TSS region transcription start site region 142173
Tssr142174 16 92825935 to 92825946 11 - TSS region transcription start site region 142174
Tssr142175 16 92825987 to 92826000 13 - TSS region transcription start site region 142175
Tssr142176 16 92826004 to 92826080 76 - TSS region transcription start site region 142176
Tssr142177 16 92826093 to 92826102 9 - TSS region transcription start site region 142177
Tssr4962 16 92831274 to 92831290 16 - TSS region transcription start site region 4962
Gm49723 16 92861877 to 92874472 12595 + lincRNA gene predicted gene, 49723
Tssr139493 16 92946799 to 92946823 24 + TSS region transcription start site region 139493
Tssr139494 16 92946832 to 92946839 7 + TSS region transcription start site region 139494
Gm41499 16 92956959 to 92959120 2161 + lncRNA gene predicted gene, 41499
Tssr139495 16 92995465 to 92995508 43 + TSS region transcription start site region 139495
Tssr139496 16 92995774 to 92995779 5 + TSS region transcription start site region 139496
Tssr4963 16 93002750 to 93002755 5 + TSS region transcription start site region 4963
Gm28003 16 93072755 to 93072822 67 + miRNA gene predicted gene, 28003
Tssr139497 16 93104146 to 93104150 4 + TSS region transcription start site region 139497
Tssr142178 16 93123092 to 93123096 4 - TSS region transcription start site region 142178
Tssr139498 16 93124007 to 93124029 22 + TSS region transcription start site region 139498
Tssr142179 16 93127754 to 93127775 21 - TSS region transcription start site region 142179
Tssr142180 16 93127792 to 93127805 13 - TSS region transcription start site region 142180
Gm30474 16 93127826 to 93132040 4214 - lncRNA gene predicted gene, 30474
Tssr142181 16 93127921 to 93127934 13 - TSS region transcription start site region 142181
D16Mit86 16 93134067 to 93134194 127 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 86
Tssr142182 16 93142059 to 93142072 13 - TSS region transcription start site region 142182
Tssr142183 16 93142078 to 93142092 14 - TSS region transcription start site region 142183
Tssr142184 16 93142151 to 93142163 12 - TSS region transcription start site region 142184
Tssr142185 16 93142192 to 93142254 62 - TSS region transcription start site region 142185
Tssr142186 16 93142263 to 93142275 12 - TSS region transcription start site region 142186
Tssr139499 16 93144328 to 93144340 12 + TSS region transcription start site region 139499
Tssr142187 16 93147699 to 93147710 11 - TSS region transcription start site region 142187
Tssr142188 16 93150440 to 93150444 4 - TSS region transcription start site region 142188
Tssr139500 16 93153054 to 93153070 16 + TSS region transcription start site region 139500
Tssr139501 16 93153299 to 93153333 34 + TSS region transcription start site region 139501
Tssr142189 16 93154058 to 93154071 13 - TSS region transcription start site region 142189
Gm30530 16 93184202 to 93193795 9593 - lncRNA gene predicted gene, 30530
41.MHAa75d5.seq 16 93218782 to 93218944 162 DNA segment DNA segment, Chr 16, 41.MHAa75d5.seq
Gm30588 16 93262363 to 93263467 1104 + lncRNA gene predicted gene, 30588
D16Jhu21 16 93292910 to 93293137 227 DNA segment DNA segment, Chr 16, Johns Hopkins University 21
1810053B23Rik 16 93343716 to 93359543 15827 - lncRNA gene RIKEN cDNA 1810053B23 gene
D16Jhu22 16 93352647 to 93352812 165 DNA segment DNA segment, Chr 16, Johns Hopkins University 22
Tssr142190 16 93354073 to 93354086 13 - TSS region transcription start site region 142190
Tssr142191 16 93358710 to 93358730 20 - TSS region transcription start site region 142191
Tssr142192 16 93359536 to 93359550 14 - TSS region transcription start site region 142192
Tssr142193 16 93365319 to 93365343 24 - TSS region transcription start site region 142193
1810044K17Rik 16 93368239 to 93369029 790 + lincRNA gene RIKEN cDNA 1810044K17 gene
Tssr139502 16 93368253 to 93368267 14 + TSS region transcription start site region 139502
Tssr139503 16 93368414 to 93368431 17 + TSS region transcription start site region 139503
Mir802 16 93369720 to 93369816 96 + miRNA gene microRNA 802
1700029J03Rik 16 93396815 to 93458872 62057 - lincRNA gene RIKEN cDNA 1700029J03 gene
Tssr4964 16 93424276 to 93424280 4 + TSS region transcription start site region 4964
D16Jhu24 16 93451624 to 93451835 211 DNA segment DNA segment, Chr 16, Johns Hopkins University 24
Cpgi8478 16 93458314 to 93458570 256 CpG island CpG island 8478
Gm30695 16 93472167 to 93487074 14907 - lincRNA gene predicted gene, 30695
Cpgi8479 16 93489460 to 93489970 510 CpG island CpG island 8479
Tssr142194 16 93490287 to 93490294 7 - TSS region transcription start site region 142194
D16Jhu25 16 93527179 to 93527374 195 DNA segment DNA segment, Chr 16, Johns Hopkins University 25
Gm49725 16 93532388 to 93534042 1654 + lincRNA gene predicted gene, 49725
Tssr139504 16 93532408 to 93532427 19 + TSS region transcription start site region 139504
Tssr4965 16 93547775 to 93547779 4 + TSS region transcription start site region 4965
Setd4 16 93583457 to 93604063 20606 - protein coding gene SET domain containing 4
Tssr142195 16 93586561 to 93586594 33 - TSS region transcription start site region 142195
Tssr139505 16 93591159 to 93591185 26 + TSS region transcription start site region 139505
Gm49961 16 93591401 to 93597760 6359 + antisense lncRNA gene predicted gene, 49961
Tssr142196 16 93598360 to 93598361 1 - TSS region transcription start site region 142196
Cpgi8480 16 93603514 to 93604290 776 CpG island CpG island 8480
Gm9510 16 93603762 to 93604967 1205 unclassified gene predicted gene 9510
Tssr139506 16 93603831 to 93603847 16 + TSS region transcription start site region 139506
Tssr142197 16 93604040 to 93604077 37 - TSS region transcription start site region 142197
Tssr142198 16 93604783 to 93604798 15 - TSS region transcription start site region 142198
Cpgi8481 16 93607695 to 93608419 724 CpG island CpG island 8481
Tssr139507 16 93607816 to 93607829 13 + TSS region transcription start site region 139507
Tssr139508 16 93607831 to 93607896 65 + TSS region transcription start site region 139508
Dp(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 chromosomal duplication duplication, Chr 16, H R Reeves 1
Cbr1 16 93607837 to 93610349 2512 + protein coding gene carbonyl reductase 1
Del(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 cytogenetic marker deletion, Chr16, R H Reeves 1
Tssr139509 16 93607904 to 93607919 15 + TSS region transcription start site region 139509
Tssr139510 16 93628025 to 93628043 18 + TSS region transcription start site region 139510
Cpgi8482 16 93628067 to 93628381 314 CpG island CpG island 8482
Gm5678 16 93628097 to 93630451 2354 + pseudogene predicted gene 5678
Cpgi8483 16 93653025 to 93653369 344 CpG island CpG island 8483
Gm45384 16 93653088 to 93653364 276 + pseudogene predicted gene 45384
Gm22344 16 93654324 to 93654601 277 + unclassified non-coding RNA gene predicted gene, 22344
Tssr139511 16 93676421 to 93676424 3 + TSS region transcription start site region 139511
Cpgi8484 16 93682692 to 93684102 1410 CpG island CpG island 8484
Tssr139512 16 93683003 to 93683024 21 + TSS region transcription start site region 139512
Tssr139513 16 93683184 to 93683223 39 + TSS region transcription start site region 139513
Cbr3 16 93683219 to 93690991 7772 + protein coding gene carbonyl reductase 3
Tssr139514 16 93683229 to 93683249 20 + TSS region transcription start site region 139514
D16Jhu28 16 93688325 to 93688561 236 DNA segment DNA segment, Chr 16, Johns Hopkins University 28
D16Jhu29 16 93690239 to 93690357 118 DNA segment DNA segment, Chr 16, Johns Hopkins University 29
Cpgi8485 16 93690505 to 93690679 174 CpG island CpG island 8485
Gm41501 16 93705336 to 93710145 4809 + lncRNA gene predicted gene, 41501
Tssr142199 16 93711267 to 93711270 3 - TSS region transcription start site region 142199
Cpgi8486 16 93711424 to 93712464 1040 CpG island CpG island 8486
Dop1b 16 93711907 to 93810588 98681 + protein coding gene DOP1 leucine zipper like protein B
Tssr139515 16 93711912 to 93711921 9 + TSS region transcription start site region 139515
Tssr139516 16 93711924 to 93711937 13 + TSS region transcription start site region 139516
Tssr139517 16 93711952 to 93712008 56 + TSS region transcription start site region 139517
Tssr142200 16 93712424 to 93712427 3 - TSS region transcription start site region 142200
Tssr142201 16 93721899 to 93721905 6 - TSS region transcription start site region 142201
Tssr4966 16 93730114 to 93730145 31 + TSS region transcription start site region 4966
D16Mit204 16 93742795 to 93742927 132 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology 204
Tssr142202 16 93751942 to 93751950 8 - TSS region transcription start site region 142202
Cpgi8487 16 93769775 to 93769926 151 CpG island CpG island 8487
Tssr139518 16 93776709 to 93776723 14 + TSS region transcription start site region 139518
Tssr139519 16 93777208 to 93777219 11 + TSS region transcription start site region 139519
Tssr139520 16 93777241 to 93777265 24 + TSS region transcription start site region 139520
Tssr139521 16 93778722 to 93778736 14 + TSS region transcription start site region 139521
Tssr139522 16 93780945 to 93780980 35 + TSS region transcription start site region 139522