Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:92308339-92689619

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smim11 16 92301303 to 92313041 11738 + protein coding gene small integral membrane protein 11
1700048M11Rik 16 92308716 to 92312466 3750 - antisense lncRNA gene RIKEN cDNA 1700048M11 gene
Fam243 16 92318765 to 92321441 2676 - protein coding gene family with sequence similarity 243
Tssr142117 16 92321393 to 92321400 7 - TSS region transcription start site region 142117
Tssr142118 16 92321406 to 92321422 16 - TSS region transcription start site region 142118
Tssr142119 16 92321425 to 92321446 21 - TSS region transcription start site region 142119
Tssr142120 16 92321454 to 92321461 7 - TSS region transcription start site region 142120
Smim34 16 92328897 to 92329254 357 - protein coding gene small integral membrane protein 34
Cpgi8469 16 92341201 to 92341395 194 CpG island CpG island 8469
Kcne1 16 92345995 to 92359468 13473 - protein coding gene potassium voltage-gated channel, Isk-related subfamily, member 1
Tssr142121 16 92346386 to 92346419 33 - TSS region transcription start site region 142121
Gm30163 16 92356704 to 92365910 9206 + lncRNA gene predicted gene, 30163
Tssr142122 16 92358881 to 92358925 44 - TSS region transcription start site region 142122
Tssr142123 16 92359424 to 92359428 4 - TSS region transcription start site region 142123
Gm29805 16 92377071 to 92382683 5612 - lincRNA gene predicted gene, 29805
Rcan1 16 92391951 to 92466169 74218 - protein coding gene regulator of calcineurin 1
Tssr142124 16 92398813 to 92398842 29 - TSS region transcription start site region 142124
Tssr142125 16 92399742 to 92399746 4 - TSS region transcription start site region 142125
Tssr142126 16 92400067 to 92400083 16 - TSS region transcription start site region 142126
Tssr139474 16 92423729 to 92423751 22 + TSS region transcription start site region 139474
Gm41498 16 92426171 to 92434060 7889 - lncRNA gene predicted gene, 41498
Tssr142127 16 92434517 to 92434527 10 - TSS region transcription start site region 142127
Gm46556 16 92452475 to 92456321 3846 + lncRNA gene predicted gene, 46556
Gm46555 16 92457477 to 92462490 5013 + antisense lncRNA gene predicted gene, 46555
Cpgi8470 16 92465432 to 92466690 1258 CpG island CpG island 8470
Tssr142128 16 92466081 to 92466187 106 - TSS region transcription start site region 142128
Tssr142129 16 92466247 to 92466274 27 - TSS region transcription start site region 142129
Tssr139475 16 92470928 to 92470968 40 + TSS region transcription start site region 139475
Cpgi8471 16 92478619 to 92478954 335 CpG island CpG island 8471
2410124H12Rik 16 92478742 to 92497365 18623 + sense overlapping lncRNA gene RIKEN cDNA 2410124H12 gene
Tssr139476 16 92485705 to 92485736 31 + TSS region transcription start site region 139476
Tssr139477 16 92498085 to 92498094 9 + TSS region transcription start site region 139477
Tssr139478 16 92498113 to 92498118 5 + TSS region transcription start site region 139478
Tssr139479 16 92498122 to 92498175 53 + TSS region transcription start site region 139479
Clic6 16 92498147 to 92541241 43094 + protein coding gene chloride intracellular channel 6
Tssr139480 16 92498210 to 92498219 9 + TSS region transcription start site region 139480
Cpgi8472 16 92498339 to 92499619 1280 CpG island CpG island 8472
Tssr139481 16 92498608 to 92498618 10 + TSS region transcription start site region 139481
Tssr139482 16 92498673 to 92498742 69 + TSS region transcription start site region 139482
Tssr139483 16 92498765 to 92498824 59 + TSS region transcription start site region 139483
Tssr139484 16 92519053 to 92519077 24 + TSS region transcription start site region 139484
Tssr142130 16 92522046 to 92522053 7 - TSS region transcription start site region 142130
Tssr139485 16 92538986 to 92538987 1 + TSS region transcription start site region 139485
Tssr139486 16 92539879 to 92539882 3 + TSS region transcription start site region 139486
Gm49722 16 92549113 to 92553143 4030 - lincRNA gene predicted gene, 49722
Gm30224 16 92584375 to 92596158 11783 - lncRNA gene predicted gene, 30224
Tssr142131 16 92596113 to 92596126 13 - TSS region transcription start site region 142131
Tssr142132 16 92596146 to 92596155 9 - TSS region transcription start site region 142132
Runx1 16 92601466 to 92826074 224608 - protein coding gene runt related transcription factor 1
Tssr142133 16 92603049 to 92603094 45 - TSS region transcription start site region 142133
Tssr142134 16 92603150 to 92603165 15 - TSS region transcription start site region 142134
Tssr142135 16 92603186 to 92603199 13 - TSS region transcription start site region 142135
Tssr142136 16 92603220 to 92603229 9 - TSS region transcription start site region 142136
Tssr142137 16 92603254 to 92603265 11 - TSS region transcription start site region 142137
Tssr142138 16 92603298 to 92603311 13 - TSS region transcription start site region 142138
Cpgi8473 16 92605532 to 92606235 703 CpG island CpG island 8473
Tssr139487 16 92612755 to 92612776 21 + TSS region transcription start site region 139487
Gm26626 16 92612814 to 92620105 7291 + antisense lncRNA gene predicted gene, 26626
Tssr139488 16 92612856 to 92612879 23 + TSS region transcription start site region 139488
Tssr142139 16 92620760 to 92620773 13 - TSS region transcription start site region 142139
Tssr4961 16 92621285 to 92621289 4 + TSS region transcription start site region 4961
Tssr142140 16 92644213 to 92644252 39 - TSS region transcription start site region 142140
D16Mit128 16 92646457 to 92646578 121 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 128
Tssr142141 16 92646781 to 92646785 4 - TSS region transcription start site region 142141
D16Mit52 16 92676374 to 92676489 115 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 52
Tssr142142 16 92677468 to 92677472 4 - TSS region transcription start site region 142142
2900022M12Rik 16 92684222 to 92687239 3017 unclassified gene RIKEN cDNA 2900022M12 gene