Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:91675223-92181630

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Son 16 91647824 to 91679195 31371 + protein coding gene Son DNA binding protein
Tssr139432 16 91676479 to 91676483 4 + TSS region transcription start site region 139432
Donson 16 91676808 to 91688770 11962 - protein coding gene downstream neighbor of SON
Tssr142104 16 91685637 to 91685665 28 - TSS region transcription start site region 142104
Cpgi8460 16 91688179 to 91689303 1124 CpG island CpG island 8460
Tssr142105 16 91688709 to 91688774 65 - TSS region transcription start site region 142105
Tssr142106 16 91688791 to 91688802 11 - TSS region transcription start site region 142106
Gm10785 16 91688898 to 91715642 26744 + antisense lncRNA gene predicted gene 10785
Cryzl1 16 91689322 to 91728802 39480 - protein coding gene crystallin, zeta (quinone reductase)-like 1
Gm46543 16 91723808 to 91728607 4799 + lncRNA gene predicted gene, 46543
Cpgi8461 16 91728312 to 91730229 1917 CpG island CpG island 8461
Tssr142107 16 91728599 to 91728637 38 - TSS region transcription start site region 142107
Tssr142108 16 91728723 to 91728730 7 - TSS region transcription start site region 142108
Tssr142109 16 91728767 to 91728776 9 - TSS region transcription start site region 142109
Tssr142110 16 91729060 to 91729092 32 - TSS region transcription start site region 142110
Tssr139433 16 91729316 to 91729390 74 + TSS region transcription start site region 139433
Itsn1 16 91729353 to 91920591 191238 + protein coding gene intersectin 1 (SH3 domain protein 1A)
Tssr142111 16 91729381 to 91729392 11 - TSS region transcription start site region 142111
Tssr139434 16 91729402 to 91729435 33 + TSS region transcription start site region 139434
Tssr139435 16 91729436 to 91729474 38 + TSS region transcription start site region 139435
Tssr139436 16 91738929 to 91738963 34 + TSS region transcription start site region 139436
Tssr139437 16 91739271 to 91739285 14 + TSS region transcription start site region 139437
Tssr139438 16 91740112 to 91740137 25 + TSS region transcription start site region 139438
Tssr139439 16 91793561 to 91793572 11 + TSS region transcription start site region 139439
Tssr139440 16 91793596 to 91793614 18 + TSS region transcription start site region 139440
Tssr139441 16 91793877 to 91793892 15 + TSS region transcription start site region 139441
Tssr139442 16 91794087 to 91794091 4 + TSS region transcription start site region 139442
Tssr139443 16 91798439 to 91798477 38 + TSS region transcription start site region 139443
Tssr139444 16 91799211 to 91799231 20 + TSS region transcription start site region 139444
Tssr139445 16 91804613 to 91804650 37 + TSS region transcription start site region 139445
Tssr139446 16 91804653 to 91804661 8 + TSS region transcription start site region 139446
Tssr139447 16 91807190 to 91807209 19 + TSS region transcription start site region 139447
Tssr139448 16 91807220 to 91807236 16 + TSS region transcription start site region 139448
Tssr139449 16 91807362 to 91807384 22 + TSS region transcription start site region 139449
Tssr139450 16 91818284 to 91818289 5 + TSS region transcription start site region 139450
Tssr139451 16 91820444 to 91820453 9 + TSS region transcription start site region 139451
Tssr139452 16 91820537 to 91820551 14 + TSS region transcription start site region 139452
Tssr139453 16 91835363 to 91835367 4 + TSS region transcription start site region 139453
Tssr139454 16 91835434 to 91835437 3 + TSS region transcription start site region 139454
Tssr139455 16 91848864 to 91848881 17 + TSS region transcription start site region 139455
Tssr139456 16 91867902 to 91867944 42 + TSS region transcription start site region 139456
Cpgi8462 16 91869591 to 91869844 253 CpG island CpG island 8462
D16Mit155 16 91910432 to 91910577 145 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 155
Gm25245 16 91921309 to 91921415 106 - snRNA gene predicted gene, 25245
Gm15976 16 91924438 to 91928635 4197 + antisense lncRNA gene predicted gene 15976
Atp5o 16 91925223 to 91931630 6407 - protein coding gene ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
Cpgi8463 16 91931113 to 91931872 759 CpG island CpG island 8463
Tssr142112 16 91931554 to 91931618 64 - TSS region transcription start site region 142112
Tssr142113 16 91931623 to 91931632 9 - TSS region transcription start site region 142113
Tssr142114 16 91931643 to 91931654 11 - TSS region transcription start site region 142114
Gm36797 16 91936341 to 91940858 4517 - lncRNA gene predicted gene, 36797
Gm27773 16 91944071 to 91944148 77 - miRNA gene predicted gene, 27773
Tssr4960 16 91946661 to 91946662 1 + TSS region transcription start site region 4960
0610009F21Rik 16 91947326 to 91947785 459 unclassified gene RIKEN cDNA 0610009F21 gene
D430001F17Rik 16 91954010 to 91966230 12220 + antisense lncRNA gene RIKEN cDNA D430001F17 gene
Tssr142115 16 91964619 to 91964660 41 - TSS region transcription start site region 142115
Tssr142116 16 91964666 to 91964685 19 - TSS region transcription start site region 142116
Cpgi8464 16 91984571 to 91984868 297 CpG island CpG island 8464
Gm36905 16 91991195 to 91997309 6114 - lncRNA gene predicted gene, 36905
Gm18020 16 92009964 to 92010411 447 - pseudogene predicted gene, 18020
Tssr139457 16 92015400 to 92015407 7 + TSS region transcription start site region 139457
Gm23210 16 92042677 to 92042774 97 + snRNA gene predicted gene, 23210
Tssr139458 16 92052300 to 92052302 2 + TSS region transcription start site region 139458
Cpgi8465 16 92057629 to 92059208 1579 CpG island CpG island 8465
Tssr139459 16 92058076 to 92058086 10 + TSS region transcription start site region 139459
Tssr139460 16 92058313 to 92058328 15 + TSS region transcription start site region 139460
Gm49711 16 92058316 to 92187341 129025 + protein coding gene predicted gene, 49711
Slc5a3 16 92058322 to 92087473 29151 + protein coding gene solute carrier family 5 (inositol transporters), member 3
Mrps6 16 92058336 to 92112227 53891 + protein coding gene mitochondrial ribosomal protein S6
Tssr139461 16 92060150 to 92060154 4 + TSS region transcription start site region 139461
Tssr139462 16 92074997 to 92075007 10 + TSS region transcription start site region 139462
Tssr139463 16 92075444 to 92075450 6 + TSS region transcription start site region 139463
Tssr139464 16 92080869 to 92080874 5 + TSS region transcription start site region 139464
Tssr139465 16 92082492 to 92082514 22 + TSS region transcription start site region 139465
Tssr139466 16 92083713 to 92083720 7 + TSS region transcription start site region 139466
Gm16310 16 92094568 to 92096490 1922 + sense intronic lncRNA gene predicted gene 16310
Gm41496 16 92126288 to 92186528 60240 + lincRNA gene predicted gene, 41496
Gm41495 16 92154247 to 92156291 2044 + lincRNA gene predicted gene, 41495
Cpgi8466 16 92158581 to 92158797 216 CpG island CpG island 8466