Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:91599310-92050591

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm15964 16 91611468 to 91623861 12393 + antisense lncRNA gene predicted gene 15964
Tssr139421 16 91611491 to 91611537 46 + TSS region transcription start site region 139421
Dnajc28 16 91614257 to 91618999 4742 - protein coding gene DnaJ heat shock protein family (Hsp40) member C28
Cpgi8458 16 91618615 to 91619109 494 CpG island CpG island 8458
Tssr142099 16 91618986 to 91619024 38 - TSS region transcription start site region 142099
Gart 16 91621186 to 91646952 25766 - protein coding gene phosphoribosylglycinamide formyltransferase
Tssr4959 16 91633820 to 91633867 47 + TSS region transcription start site region 4959
Tssr142100 16 91638019 to 91638030 11 - TSS region transcription start site region 142100
Cpgi8459 16 91646669 to 91648394 1725 CpG island CpG island 8459
Tssr142101 16 91646906 to 91646960 54 - TSS region transcription start site region 142101
Tssr139422 16 91647060 to 91647106 46 + TSS region transcription start site region 139422
Tssr142102 16 91647629 to 91647650 21 - TSS region transcription start site region 142102
Tssr142103 16 91647691 to 91647714 23 - TSS region transcription start site region 142103
Son 16 91647824 to 91679195 31371 + protein coding gene Son DNA binding protein
Tssr139423 16 91647842 to 91647858 16 + TSS region transcription start site region 139423
Tssr139424 16 91647859 to 91647905 46 + TSS region transcription start site region 139424
Tssr139425 16 91651678 to 91651700 22 + TSS region transcription start site region 139425
Tssr139426 16 91651746 to 91651777 31 + TSS region transcription start site region 139426
Gm36712 16 91651803 to 91653026 1223 + protein coding gene predicted gene, 36712
Tssr139427 16 91654621 to 91654675 54 + TSS region transcription start site region 139427
Tssr139428 16 91659512 to 91659538 26 + TSS region transcription start site region 139428
Tssr139429 16 91659658 to 91659713 55 + TSS region transcription start site region 139429
Tssr139430 16 91663380 to 91663401 21 + TSS region transcription start site region 139430
Tssr139431 16 91663958 to 91663970 12 + TSS region transcription start site region 139431
Tssr139432 16 91676479 to 91676483 4 + TSS region transcription start site region 139432
Donson 16 91676808 to 91688770 11962 - protein coding gene downstream neighbor of SON
Tssr142104 16 91685637 to 91685665 28 - TSS region transcription start site region 142104
Cpgi8460 16 91688179 to 91689303 1124 CpG island CpG island 8460
Tssr142105 16 91688709 to 91688774 65 - TSS region transcription start site region 142105
Tssr142106 16 91688791 to 91688802 11 - TSS region transcription start site region 142106
Gm10785 16 91688898 to 91715642 26744 + antisense lncRNA gene predicted gene 10785
Cryzl1 16 91689322 to 91728802 39480 - protein coding gene crystallin, zeta (quinone reductase)-like 1
Gm46543 16 91723808 to 91728607 4799 + lncRNA gene predicted gene, 46543
Cpgi8461 16 91728312 to 91730229 1917 CpG island CpG island 8461
Tssr142107 16 91728599 to 91728637 38 - TSS region transcription start site region 142107
Tssr142108 16 91728723 to 91728730 7 - TSS region transcription start site region 142108
Tssr142109 16 91728767 to 91728776 9 - TSS region transcription start site region 142109
Tssr142110 16 91729060 to 91729092 32 - TSS region transcription start site region 142110
Tssr139433 16 91729316 to 91729390 74 + TSS region transcription start site region 139433
Itsn1 16 91729353 to 91920591 191238 + protein coding gene intersectin 1 (SH3 domain protein 1A)
Tssr142111 16 91729381 to 91729392 11 - TSS region transcription start site region 142111
Tssr139434 16 91729402 to 91729435 33 + TSS region transcription start site region 139434
Tssr139435 16 91729436 to 91729474 38 + TSS region transcription start site region 139435
Tssr139436 16 91738929 to 91738963 34 + TSS region transcription start site region 139436
Tssr139437 16 91739271 to 91739285 14 + TSS region transcription start site region 139437
Tssr139438 16 91740112 to 91740137 25 + TSS region transcription start site region 139438
Tssr139439 16 91793561 to 91793572 11 + TSS region transcription start site region 139439
Tssr139440 16 91793596 to 91793614 18 + TSS region transcription start site region 139440
Tssr139441 16 91793877 to 91793892 15 + TSS region transcription start site region 139441
Tssr139442 16 91794087 to 91794091 4 + TSS region transcription start site region 139442
Tssr139443 16 91798439 to 91798477 38 + TSS region transcription start site region 139443
Tssr139444 16 91799211 to 91799231 20 + TSS region transcription start site region 139444
Tssr139445 16 91804613 to 91804650 37 + TSS region transcription start site region 139445
Tssr139446 16 91804653 to 91804661 8 + TSS region transcription start site region 139446
Tssr139447 16 91807190 to 91807209 19 + TSS region transcription start site region 139447
Tssr139448 16 91807220 to 91807236 16 + TSS region transcription start site region 139448
Tssr139449 16 91807362 to 91807384 22 + TSS region transcription start site region 139449
Tssr139450 16 91818284 to 91818289 5 + TSS region transcription start site region 139450
Tssr139451 16 91820444 to 91820453 9 + TSS region transcription start site region 139451
Tssr139452 16 91820537 to 91820551 14 + TSS region transcription start site region 139452
Tssr139453 16 91835363 to 91835367 4 + TSS region transcription start site region 139453
Tssr139454 16 91835434 to 91835437 3 + TSS region transcription start site region 139454
Tssr139455 16 91848864 to 91848881 17 + TSS region transcription start site region 139455
Tssr139456 16 91867902 to 91867944 42 + TSS region transcription start site region 139456
Cpgi8462 16 91869591 to 91869844 253 CpG island CpG island 8462
D16Mit155 16 91910432 to 91910577 145 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 155
Gm25245 16 91921309 to 91921415 106 - snRNA gene predicted gene, 25245
Gm15976 16 91924438 to 91928635 4197 + antisense lncRNA gene predicted gene 15976
Atp5o 16 91925223 to 91931630 6407 - protein coding gene ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
Cpgi8463 16 91931113 to 91931872 759 CpG island CpG island 8463
Tssr142112 16 91931554 to 91931618 64 - TSS region transcription start site region 142112
Tssr142113 16 91931623 to 91931632 9 - TSS region transcription start site region 142113
Tssr142114 16 91931643 to 91931654 11 - TSS region transcription start site region 142114
Gm36797 16 91936341 to 91940858 4517 - lncRNA gene predicted gene, 36797
Gm27773 16 91944071 to 91944148 77 - miRNA gene predicted gene, 27773
Tssr4960 16 91946661 to 91946662 1 + TSS region transcription start site region 4960
0610009F21Rik 16 91947326 to 91947785 459 unclassified gene RIKEN cDNA 0610009F21 gene
D430001F17Rik 16 91954010 to 91966230 12220 + antisense lncRNA gene RIKEN cDNA D430001F17 gene
Tssr142115 16 91964619 to 91964660 41 - TSS region transcription start site region 142115
Tssr142116 16 91964666 to 91964685 19 - TSS region transcription start site region 142116
Cpgi8464 16 91984571 to 91984868 297 CpG island CpG island 8464
Gm36905 16 91991195 to 91997309 6114 - lncRNA gene predicted gene, 36905
Gm18020 16 92009964 to 92010411 447 - pseudogene predicted gene, 18020
Tssr139457 16 92015400 to 92015407 7 + TSS region transcription start site region 139457
Gm23210 16 92042677 to 92042774 97 + snRNA gene predicted gene, 23210