Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:91597475-93311321

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266 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aod1a 16 35626273 to 92776120 57149847 QTL autoimmune ovarian dysgenesis 1a
Del(16App-Runx1)5Yah 16 84952666 to 92826074 7873408 chromosomal deletion deletion, Chr 16, Yann Herault 5
Tmem50b 16 91574508 to 91597680 23172 - protein coding gene transmembrane protein 50B
Cpgi8457 16 91596824 to 91598197 1373 CpG island CpG island 8457
Tssr142098 16 91597636 to 91597735 99 - TSS region transcription start site region 142098
Gm15964 16 91611468 to 91623861 12393 + antisense lncRNA gene predicted gene 15964
Tssr139421 16 91611491 to 91611537 46 + TSS region transcription start site region 139421
Dnajc28 16 91614257 to 91618999 4742 - protein coding gene DnaJ heat shock protein family (Hsp40) member C28
Cpgi8458 16 91618615 to 91619109 494 CpG island CpG island 8458
Tssr142099 16 91618986 to 91619024 38 - TSS region transcription start site region 142099
Gart 16 91621186 to 91646952 25766 - protein coding gene phosphoribosylglycinamide formyltransferase
Tssr4959 16 91633820 to 91633867 47 + TSS region transcription start site region 4959
Tssr142100 16 91638019 to 91638030 11 - TSS region transcription start site region 142100
Cpgi8459 16 91646669 to 91648394 1725 CpG island CpG island 8459
Tssr142101 16 91646906 to 91646960 54 - TSS region transcription start site region 142101
Tssr139422 16 91647060 to 91647106 46 + TSS region transcription start site region 139422
Tssr142102 16 91647629 to 91647650 21 - TSS region transcription start site region 142102
Tssr142103 16 91647691 to 91647714 23 - TSS region transcription start site region 142103
Son 16 91647824 to 91679195 31371 + protein coding gene Son DNA binding protein
Tssr139423 16 91647842 to 91647858 16 + TSS region transcription start site region 139423
Tssr139424 16 91647859 to 91647905 46 + TSS region transcription start site region 139424
Tssr139425 16 91651678 to 91651700 22 + TSS region transcription start site region 139425
Tssr139426 16 91651746 to 91651777 31 + TSS region transcription start site region 139426
Gm36712 16 91651803 to 91653026 1223 + protein coding gene predicted gene, 36712
Tssr139427 16 91654621 to 91654675 54 + TSS region transcription start site region 139427
Tssr139428 16 91659512 to 91659538 26 + TSS region transcription start site region 139428
Tssr139429 16 91659658 to 91659713 55 + TSS region transcription start site region 139429
Tssr139430 16 91663380 to 91663401 21 + TSS region transcription start site region 139430
Tssr139431 16 91663958 to 91663970 12 + TSS region transcription start site region 139431
Tssr139432 16 91676479 to 91676483 4 + TSS region transcription start site region 139432
Donson 16 91676808 to 91688770 11962 - protein coding gene downstream neighbor of SON
Tssr142104 16 91685637 to 91685665 28 - TSS region transcription start site region 142104
Cpgi8460 16 91688179 to 91689303 1124 CpG island CpG island 8460
Tssr142105 16 91688709 to 91688774 65 - TSS region transcription start site region 142105
Tssr142106 16 91688791 to 91688802 11 - TSS region transcription start site region 142106
Gm10785 16 91688898 to 91715642 26744 + antisense lncRNA gene predicted gene 10785
Cryzl1 16 91689322 to 91728802 39480 - protein coding gene crystallin, zeta (quinone reductase)-like 1
Gm46543 16 91723808 to 91728607 4799 + lncRNA gene predicted gene, 46543
Cpgi8461 16 91728312 to 91730229 1917 CpG island CpG island 8461
Tssr142107 16 91728599 to 91728637 38 - TSS region transcription start site region 142107
Tssr142108 16 91728723 to 91728730 7 - TSS region transcription start site region 142108
Tssr142109 16 91728767 to 91728776 9 - TSS region transcription start site region 142109
Tssr142110 16 91729060 to 91729092 32 - TSS region transcription start site region 142110
Tssr139433 16 91729316 to 91729390 74 + TSS region transcription start site region 139433
Itsn1 16 91729353 to 91920591 191238 + protein coding gene intersectin 1 (SH3 domain protein 1A)
Tssr142111 16 91729381 to 91729392 11 - TSS region transcription start site region 142111
Tssr139434 16 91729402 to 91729435 33 + TSS region transcription start site region 139434
Tssr139435 16 91729436 to 91729474 38 + TSS region transcription start site region 139435
Tssr139436 16 91738929 to 91738963 34 + TSS region transcription start site region 139436
Tssr139437 16 91739271 to 91739285 14 + TSS region transcription start site region 139437
Tssr139438 16 91740112 to 91740137 25 + TSS region transcription start site region 139438
Tssr139439 16 91793561 to 91793572 11 + TSS region transcription start site region 139439
Tssr139440 16 91793596 to 91793614 18 + TSS region transcription start site region 139440
Tssr139441 16 91793877 to 91793892 15 + TSS region transcription start site region 139441
Tssr139442 16 91794087 to 91794091 4 + TSS region transcription start site region 139442
Tssr139443 16 91798439 to 91798477 38 + TSS region transcription start site region 139443
Tssr139444 16 91799211 to 91799231 20 + TSS region transcription start site region 139444
Tssr139445 16 91804613 to 91804650 37 + TSS region transcription start site region 139445
Tssr139446 16 91804653 to 91804661 8 + TSS region transcription start site region 139446
Tssr139447 16 91807190 to 91807209 19 + TSS region transcription start site region 139447
Tssr139448 16 91807220 to 91807236 16 + TSS region transcription start site region 139448
Tssr139449 16 91807362 to 91807384 22 + TSS region transcription start site region 139449
Tssr139450 16 91818284 to 91818289 5 + TSS region transcription start site region 139450
Tssr139451 16 91820444 to 91820453 9 + TSS region transcription start site region 139451
Tssr139452 16 91820537 to 91820551 14 + TSS region transcription start site region 139452
Tssr139453 16 91835363 to 91835367 4 + TSS region transcription start site region 139453
Tssr139454 16 91835434 to 91835437 3 + TSS region transcription start site region 139454
Tssr139455 16 91848864 to 91848881 17 + TSS region transcription start site region 139455
Tssr139456 16 91867902 to 91867944 42 + TSS region transcription start site region 139456
Cpgi8462 16 91869591 to 91869844 253 CpG island CpG island 8462
D16Mit155 16 91910432 to 91910577 145 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 155
Gm25245 16 91921309 to 91921415 106 - snRNA gene predicted gene, 25245
Gm15976 16 91924438 to 91928635 4197 + antisense lncRNA gene predicted gene 15976
Atp5o 16 91925223 to 91931630 6407 - protein coding gene ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
Cpgi8463 16 91931113 to 91931872 759 CpG island CpG island 8463
Tssr142112 16 91931554 to 91931618 64 - TSS region transcription start site region 142112
Tssr142113 16 91931623 to 91931632 9 - TSS region transcription start site region 142113
Tssr142114 16 91931643 to 91931654 11 - TSS region transcription start site region 142114
Gm36797 16 91936341 to 91940858 4517 - lncRNA gene predicted gene, 36797
Gm27773 16 91944071 to 91944148 77 - miRNA gene predicted gene, 27773
Tssr4960 16 91946661 to 91946662 1 + TSS region transcription start site region 4960
0610009F21Rik 16 91947326 to 91947785 459 unclassified gene RIKEN cDNA 0610009F21 gene
D430001F17Rik 16 91954010 to 91966230 12220 + antisense lncRNA gene RIKEN cDNA D430001F17 gene
Tssr142115 16 91964619 to 91964660 41 - TSS region transcription start site region 142115
Tssr142116 16 91964666 to 91964685 19 - TSS region transcription start site region 142116
Cpgi8464 16 91984571 to 91984868 297 CpG island CpG island 8464
Gm36905 16 91991195 to 91997309 6114 - lncRNA gene predicted gene, 36905
Gm18020 16 92009964 to 92010411 447 - pseudogene predicted gene, 18020
Tssr139457 16 92015400 to 92015407 7 + TSS region transcription start site region 139457
Gm23210 16 92042677 to 92042774 97 + snRNA gene predicted gene, 23210
Tssr139458 16 92052300 to 92052302 2 + TSS region transcription start site region 139458
Cpgi8465 16 92057629 to 92059208 1579 CpG island CpG island 8465
Tssr139459 16 92058076 to 92058086 10 + TSS region transcription start site region 139459
Tssr139460 16 92058313 to 92058328 15 + TSS region transcription start site region 139460
Gm49711 16 92058316 to 92187341 129025 + protein coding gene predicted gene, 49711
Slc5a3 16 92058322 to 92087473 29151 + protein coding gene solute carrier family 5 (inositol transporters), member 3
Mrps6 16 92058336 to 92112227 53891 + protein coding gene mitochondrial ribosomal protein S6
Tssr139461 16 92060150 to 92060154 4 + TSS region transcription start site region 139461
Tssr139462 16 92074997 to 92075007 10 + TSS region transcription start site region 139462
Tssr139463 16 92075444 to 92075450 6 + TSS region transcription start site region 139463
Tssr139464 16 92080869 to 92080874 5 + TSS region transcription start site region 139464
Tssr139465 16 92082492 to 92082514 22 + TSS region transcription start site region 139465
Tssr139466 16 92083713 to 92083720 7 + TSS region transcription start site region 139466
Gm16310 16 92094568 to 92096490 1922 + sense intronic lncRNA gene predicted gene 16310
Gm41496 16 92126288 to 92186528 60240 + lincRNA gene predicted gene, 41496
Gm41495 16 92154247 to 92156291 2044 + lincRNA gene predicted gene, 41495
Cpgi8466 16 92158581 to 92158797 216 CpG island CpG island 8466
Cpgi8467 16 92182976 to 92183219 243 CpG island CpG island 8467
Gm49716 16 92189062 to 92189503 441 - pseudogene predicted gene, 49716
Gm29880 16 92202901 to 92207488 4587 - lncRNA gene predicted gene, 29880
Gm41497 16 92245994 to 92249021 3027 + lncRNA gene predicted gene, 41497
Tssr139467 16 92291109 to 92291114 5 + TSS region transcription start site region 139467
Tssr139468 16 92292330 to 92292341 11 + TSS region transcription start site region 139468
Tssr139469 16 92292362 to 92292375 13 + TSS region transcription start site region 139469
Tssr139470 16 92292380 to 92292397 17 + TSS region transcription start site region 139470
Kcne2 16 92292389 to 92298129 5740 + protein coding gene potassium voltage-gated channel, Isk-related subfamily, gene 2
Tssr139471 16 92292398 to 92292411 13 + TSS region transcription start site region 139471
Tssr139472 16 92292450 to 92292461 11 + TSS region transcription start site region 139472
Cpgi8468 16 92301008 to 92301660 652 CpG island CpG island 8468
Tssr139473 16 92301266 to 92301323 57 + TSS region transcription start site region 139473
Smim11 16 92301303 to 92313041 11738 + protein coding gene small integral membrane protein 11
1700048M11Rik 16 92308716 to 92312466 3750 - antisense lncRNA gene RIKEN cDNA 1700048M11 gene
Fam243 16 92318765 to 92321441 2676 - protein coding gene family with sequence similarity 243
Tssr142117 16 92321393 to 92321400 7 - TSS region transcription start site region 142117
Tssr142118 16 92321406 to 92321422 16 - TSS region transcription start site region 142118
Tssr142119 16 92321425 to 92321446 21 - TSS region transcription start site region 142119
Tssr142120 16 92321454 to 92321461 7 - TSS region transcription start site region 142120
Smim34 16 92328897 to 92329254 357 - protein coding gene small integral membrane protein 34
Cpgi8469 16 92341201 to 92341395 194 CpG island CpG island 8469
Kcne1 16 92345995 to 92359468 13473 - protein coding gene potassium voltage-gated channel, Isk-related subfamily, member 1
Tssr142121 16 92346386 to 92346419 33 - TSS region transcription start site region 142121
Gm30163 16 92356704 to 92365910 9206 + lncRNA gene predicted gene, 30163
Tssr142122 16 92358881 to 92358925 44 - TSS region transcription start site region 142122
Tssr142123 16 92359424 to 92359428 4 - TSS region transcription start site region 142123
Gm29805 16 92377071 to 92382683 5612 - lincRNA gene predicted gene, 29805
Rcan1 16 92391951 to 92466169 74218 - protein coding gene regulator of calcineurin 1
Tssr142124 16 92398813 to 92398842 29 - TSS region transcription start site region 142124
Tssr142125 16 92399742 to 92399746 4 - TSS region transcription start site region 142125
Tssr142126 16 92400067 to 92400083 16 - TSS region transcription start site region 142126
Tssr139474 16 92423729 to 92423751 22 + TSS region transcription start site region 139474
Gm41498 16 92426171 to 92434060 7889 - lncRNA gene predicted gene, 41498
Tssr142127 16 92434517 to 92434527 10 - TSS region transcription start site region 142127
Gm46556 16 92452475 to 92456321 3846 + lncRNA gene predicted gene, 46556
Gm46555 16 92457477 to 92462490 5013 + antisense lncRNA gene predicted gene, 46555
Cpgi8470 16 92465432 to 92466690 1258 CpG island CpG island 8470
Tssr142128 16 92466081 to 92466187 106 - TSS region transcription start site region 142128
Tssr142129 16 92466247 to 92466274 27 - TSS region transcription start site region 142129
Tssr139475 16 92470928 to 92470968 40 + TSS region transcription start site region 139475
Cpgi8471 16 92478619 to 92478954 335 CpG island CpG island 8471
2410124H12Rik 16 92478742 to 92497365 18623 + sense overlapping lncRNA gene RIKEN cDNA 2410124H12 gene
Tssr139476 16 92485705 to 92485736 31 + TSS region transcription start site region 139476
Tssr139477 16 92498085 to 92498094 9 + TSS region transcription start site region 139477
Tssr139478 16 92498113 to 92498118 5 + TSS region transcription start site region 139478
Tssr139479 16 92498122 to 92498175 53 + TSS region transcription start site region 139479
Clic6 16 92498147 to 92541241 43094 + protein coding gene chloride intracellular channel 6
Tssr139480 16 92498210 to 92498219 9 + TSS region transcription start site region 139480
Cpgi8472 16 92498339 to 92499619 1280 CpG island CpG island 8472
Tssr139481 16 92498608 to 92498618 10 + TSS region transcription start site region 139481
Tssr139482 16 92498673 to 92498742 69 + TSS region transcription start site region 139482
Tssr139483 16 92498765 to 92498824 59 + TSS region transcription start site region 139483
Tssr139484 16 92519053 to 92519077 24 + TSS region transcription start site region 139484
Tssr142130 16 92522046 to 92522053 7 - TSS region transcription start site region 142130
Tssr139485 16 92538986 to 92538987 1 + TSS region transcription start site region 139485
Tssr139486 16 92539879 to 92539882 3 + TSS region transcription start site region 139486
Gm49722 16 92549113 to 92553143 4030 - lincRNA gene predicted gene, 49722
Gm30224 16 92584375 to 92596158 11783 - lncRNA gene predicted gene, 30224
Tssr142131 16 92596113 to 92596126 13 - TSS region transcription start site region 142131
Tssr142132 16 92596146 to 92596155 9 - TSS region transcription start site region 142132
Runx1 16 92601466 to 92826074 224608 - protein coding gene runt related transcription factor 1
Tssr142133 16 92603049 to 92603094 45 - TSS region transcription start site region 142133
Tssr142134 16 92603150 to 92603165 15 - TSS region transcription start site region 142134
Tssr142135 16 92603186 to 92603199 13 - TSS region transcription start site region 142135
Tssr142136 16 92603220 to 92603229 9 - TSS region transcription start site region 142136
Tssr142137 16 92603254 to 92603265 11 - TSS region transcription start site region 142137
Tssr142138 16 92603298 to 92603311 13 - TSS region transcription start site region 142138
Cpgi8473 16 92605532 to 92606235 703 CpG island CpG island 8473
Tssr139487 16 92612755 to 92612776 21 + TSS region transcription start site region 139487
Gm26626 16 92612814 to 92620105 7291 + antisense lncRNA gene predicted gene, 26626
Tssr139488 16 92612856 to 92612879 23 + TSS region transcription start site region 139488
Tssr142139 16 92620760 to 92620773 13 - TSS region transcription start site region 142139
Tssr4961 16 92621285 to 92621289 4 + TSS region transcription start site region 4961
Tssr142140 16 92644213 to 92644252 39 - TSS region transcription start site region 142140
D16Mit128 16 92646457 to 92646578 121 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 128
Tssr142141 16 92646781 to 92646785 4 - TSS region transcription start site region 142141
D16Mit52 16 92676374 to 92676489 115 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 52
Tssr142142 16 92677468 to 92677472 4 - TSS region transcription start site region 142142
2900022M12Rik 16 92684222 to 92687239 3017 unclassified gene RIKEN cDNA 2900022M12 gene
A630044M17Rik 16 92691405 to 92694945 3540 unclassified gene RIKEN cDNA A630044M17 gene
Tssr142143 16 92694922 to 92694926 4 - TSS region transcription start site region 142143
Tssr142144 16 92695066 to 92695089 23 - TSS region transcription start site region 142144
Tssr142145 16 92695218 to 92695231 13 - TSS region transcription start site region 142145
Cpgi8474 16 92695291 to 92695988 697 CpG island CpG island 8474
Cpgi8475 16 92696644 to 92699157 2513 CpG island CpG island 8475
Tssr142146 16 92697109 to 92697117 8 - TSS region transcription start site region 142146
Tssr142147 16 92697315 to 92697347 32 - TSS region transcription start site region 142147
Cpgi8476 16 92699827 to 92700052 225 CpG island CpG island 8476
A430042E23Rik 16 92726177 to 92729510 3333 unclassified gene RIKEN cDNA A430042E23 gene
Tssr142148 16 92727214 to 92727218 4 - TSS region transcription start site region 142148
Tssr142149 16 92739498 to 92739499 1 - TSS region transcription start site region 142149
Gm30281 16 92761922 to 92767240 5318 + lncRNA gene predicted gene, 30281