Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:91406374-93946489

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460 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aod1a 16 35626273 to 92776120 57149847 QTL autoimmune ovarian dysgenesis 1a
Del(16App-Runx1)5Yah 16 84952666 to 92826074 7873408 chromosomal deletion deletion, Chr 16, Yann Herault 5
Gm21970 16 91391721 to 91419451 27730 + protein coding gene predicted gene 21970
Cpgi8450 16 91406032 to 91406825 793 CpG island CpG island 8450
Il10rb 16 91406235 to 91425834 19599 + protein coding gene interleukin 10 receptor, beta
Tssr139368 16 91406367 to 91406378 11 + TSS region transcription start site region 139368
Tssr139369 16 91406438 to 91406460 22 + TSS region transcription start site region 139369
Tssr139370 16 91406464 to 91406486 22 + TSS region transcription start site region 139370
Tssr142083 16 91406830 to 91406860 30 - TSS region transcription start site region 142083
Tssr142084 16 91406889 to 91406902 13 - TSS region transcription start site region 142084
Tssr139371 16 91406994 to 91407015 21 + TSS region transcription start site region 139371
Tssr139372 16 91407029 to 91407041 12 + TSS region transcription start site region 139372
Tssr139373 16 91407055 to 91407075 20 + TSS region transcription start site region 139373
Tssr139374 16 91407085 to 91407132 47 + TSS region transcription start site region 139374
Tssr139375 16 91407135 to 91407149 14 + TSS region transcription start site region 139375
Tssr139376 16 91407227 to 91407246 19 + TSS region transcription start site region 139376
Tssr139377 16 91407498 to 91407519 21 + TSS region transcription start site region 139377
Tssr139378 16 91416049 to 91416065 16 + TSS region transcription start site region 139378
Tssr139379 16 91420859 to 91420941 82 + TSS region transcription start site region 139379
Tssr139380 16 91420974 to 91421013 39 + TSS region transcription start site region 139380
Tssr139381 16 91421773 to 91421796 23 + TSS region transcription start site region 139381
Tssr139382 16 91424870 to 91424892 22 + TSS region transcription start site region 139382
Tssr139383 16 91425053 to 91425077 24 + TSS region transcription start site region 139383
Tssr142085 16 91425122 to 91425151 29 - TSS region transcription start site region 142085
Tssr139384 16 91425338 to 91425350 12 + TSS region transcription start site region 139384
Tssr139385 16 91425410 to 91425430 20 + TSS region transcription start site region 139385
Gm49625 16 91435293 to 91464803 29510 - lincRNA gene predicted gene, 49625
Tssr142086 16 91441541 to 91441542 1 - TSS region transcription start site region 142086
Tssr139386 16 91458405 to 91458427 22 + TSS region transcription start site region 139386
Gm46562 16 91458421 to 91458612 191 + pseudogene predicted gene, 46562
Tssr139387 16 91458717 to 91458748 31 + TSS region transcription start site region 139387
Tssr139388 16 91462139 to 91462152 13 + TSS region transcription start site region 139388
Cpgi8451 16 91464683 to 91465313 630 CpG island CpG island 8451
Tssr142087 16 91464815 to 91464828 13 - TSS region transcription start site region 142087
Tssr142088 16 91464837 to 91464891 54 - TSS region transcription start site region 142088
Tssr139389 16 91464990 to 91465019 29 + TSS region transcription start site region 139389
Tssr139390 16 91465021 to 91465032 11 + TSS region transcription start site region 139390
Tssr139391 16 91465033 to 91465051 18 + TSS region transcription start site region 139391
Tssr139392 16 91465079 to 91465111 32 + TSS region transcription start site region 139392
A930006K02Rik 16 91465104 to 91470123 5019 + lncRNA gene RIKEN cDNA A930006K02 gene
Gm49626 16 91465125 to 91476984 11859 + pseudogene predicted gene, 49626
Tssr139393 16 91465134 to 91465145 11 + TSS region transcription start site region 139393
Tssr139394 16 91465165 to 91465193 28 + TSS region transcription start site region 139394
Tssr142089 16 91466642 to 91466677 35 - TSS region transcription start site region 142089
Tssr139395 16 91475876 to 91475897 21 + TSS region transcription start site region 139395
Cpgi8452 16 91484850 to 91485682 832 CpG island CpG island 8452
Tssr142090 16 91484918 to 91484936 18 - TSS region transcription start site region 142090
Tssr139396 16 91485053 to 91485066 13 + TSS region transcription start site region 139396
Tssr139397 16 91485067 to 91485105 38 + TSS region transcription start site region 139397
Tssr139398 16 91485115 to 91485144 29 + TSS region transcription start site region 139398
Tssr139399 16 91485233 to 91485294 61 + TSS region transcription start site region 139399
Ifnar1 16 91485238 to 91507441 22203 + protein coding gene interferon (alpha and beta) receptor 1
Tssr139400 16 91485295 to 91485309 14 + TSS region transcription start site region 139400
Tssr139401 16 91489694 to 91489707 13 + TSS region transcription start site region 139401
Tssr139402 16 91492636 to 91492658 22 + TSS region transcription start site region 139402
Tssr139403 16 91506181 to 91506225 44 + TSS region transcription start site region 139403
Gm7856 16 91513141 to 91514633 1492 - pseudogene predicted gene 7856
Cpgi8453 16 91514579 to 91514800 221 CpG island CpG island 8453
Tssr142091 16 91514806 to 91514810 4 - TSS region transcription start site region 142091
Tssr4956 16 91522653 to 91522665 12 - TSS region transcription start site region 4956
Cpgi8454 16 91522998 to 91523162 164 CpG island CpG island 8454
Mir6367 16 91527443 to 91527544 101 - miRNA gene microRNA 6367
Tssr142092 16 91533593 to 91533609 16 - TSS region transcription start site region 142092
Tssr139404 16 91534068 to 91534076 8 + TSS region transcription start site region 139404
Tssr4957 16 91534646 to 91534673 27 + TSS region transcription start site region 4957
Tssr4958 16 91534684 to 91534699 15 - TSS region transcription start site region 4958
Gm7860 16 91539182 to 91540060 878 - pseudogene predicted gene 7860
Tssr139405 16 91545673 to 91545694 21 + TSS region transcription start site region 139405
Tssr139406 16 91545711 to 91545722 11 + TSS region transcription start site region 139406
Cpgi8455 16 91546420 to 91547646 1226 CpG island CpG island 8455
Tssr139407 16 91547048 to 91547114 66 + TSS region transcription start site region 139407
Ifngr2 16 91547094 to 91564007 16913 + protein coding gene interferon gamma receptor 2
Tssr139408 16 91547232 to 91547273 41 + TSS region transcription start site region 139408
Tssr142093 16 91547613 to 91547640 27 - TSS region transcription start site region 142093
Tssr139409 16 91547829 to 91547840 11 + TSS region transcription start site region 139409
Tssr142094 16 91548161 to 91548195 34 - TSS region transcription start site region 142094
Tssr142095 16 91548287 to 91548310 23 - TSS region transcription start site region 142095
Tssr142096 16 91549744 to 91549767 23 - TSS region transcription start site region 142096
Tssr139410 16 91550537 to 91550545 8 + TSS region transcription start site region 139410
Tssr139411 16 91560184 to 91560192 8 + TSS region transcription start site region 139411
Tssr139412 16 91560543 to 91560559 16 + TSS region transcription start site region 139412
Tssr139413 16 91561289 to 91561301 12 + TSS region transcription start site region 139413
Tssr139414 16 91561316 to 91561331 15 + TSS region transcription start site region 139414
Cpgi8456 16 91561562 to 91561867 305 CpG island CpG island 8456
Tssr139415 16 91561722 to 91561752 30 + TSS region transcription start site region 139415
Tssr139416 16 91563007 to 91563025 18 + TSS region transcription start site region 139416
Tssr139417 16 91563029 to 91563064 35 + TSS region transcription start site region 139417
Tssr139418 16 91563420 to 91563458 38 + TSS region transcription start site region 139418
Tssr139419 16 91563536 to 91563541 5 + TSS region transcription start site region 139419
Tssr139420 16 91563579 to 91563585 6 + TSS region transcription start site region 139420
Tmem50b 16 91574508 to 91597680 23172 - protein coding gene transmembrane protein 50B
Cpgi8457 16 91596824 to 91598197 1373 CpG island CpG island 8457
Tssr142097 16 91597386 to 91597415 29 - TSS region transcription start site region 142097
Tssr142098 16 91597636 to 91597735 99 - TSS region transcription start site region 142098
Gm15964 16 91611468 to 91623861 12393 + antisense lncRNA gene predicted gene 15964
Tssr139421 16 91611491 to 91611537 46 + TSS region transcription start site region 139421
Dnajc28 16 91614257 to 91618999 4742 - protein coding gene DnaJ heat shock protein family (Hsp40) member C28
Cpgi8458 16 91618615 to 91619109 494 CpG island CpG island 8458
Tssr142099 16 91618986 to 91619024 38 - TSS region transcription start site region 142099
Gart 16 91621186 to 91646952 25766 - protein coding gene phosphoribosylglycinamide formyltransferase
Tssr4959 16 91633820 to 91633867 47 + TSS region transcription start site region 4959
Tssr142100 16 91638019 to 91638030 11 - TSS region transcription start site region 142100
Cpgi8459 16 91646669 to 91648394 1725 CpG island CpG island 8459
Tssr142101 16 91646906 to 91646960 54 - TSS region transcription start site region 142101
Tssr139422 16 91647060 to 91647106 46 + TSS region transcription start site region 139422
Tssr142102 16 91647629 to 91647650 21 - TSS region transcription start site region 142102
Tssr142103 16 91647691 to 91647714 23 - TSS region transcription start site region 142103
Son 16 91647824 to 91679195 31371 + protein coding gene Son DNA binding protein
Tssr139423 16 91647842 to 91647858 16 + TSS region transcription start site region 139423
Tssr139424 16 91647859 to 91647905 46 + TSS region transcription start site region 139424
Tssr139425 16 91651678 to 91651700 22 + TSS region transcription start site region 139425
Tssr139426 16 91651746 to 91651777 31 + TSS region transcription start site region 139426
Gm36712 16 91651803 to 91653026 1223 + protein coding gene predicted gene, 36712
Tssr139427 16 91654621 to 91654675 54 + TSS region transcription start site region 139427
Tssr139428 16 91659512 to 91659538 26 + TSS region transcription start site region 139428
Tssr139429 16 91659658 to 91659713 55 + TSS region transcription start site region 139429
Tssr139430 16 91663380 to 91663401 21 + TSS region transcription start site region 139430
Tssr139431 16 91663958 to 91663970 12 + TSS region transcription start site region 139431
Tssr139432 16 91676479 to 91676483 4 + TSS region transcription start site region 139432
Donson 16 91676808 to 91688770 11962 - protein coding gene downstream neighbor of SON
Tssr142104 16 91685637 to 91685665 28 - TSS region transcription start site region 142104
Cpgi8460 16 91688179 to 91689303 1124 CpG island CpG island 8460
Tssr142105 16 91688709 to 91688774 65 - TSS region transcription start site region 142105
Tssr142106 16 91688791 to 91688802 11 - TSS region transcription start site region 142106
Gm10785 16 91688898 to 91715642 26744 + antisense lncRNA gene predicted gene 10785
Cryzl1 16 91689322 to 91728802 39480 - protein coding gene crystallin, zeta (quinone reductase)-like 1
Gm46543 16 91723808 to 91728607 4799 + lncRNA gene predicted gene, 46543
Cpgi8461 16 91728312 to 91730229 1917 CpG island CpG island 8461
Tssr142107 16 91728599 to 91728637 38 - TSS region transcription start site region 142107
Tssr142108 16 91728723 to 91728730 7 - TSS region transcription start site region 142108
Tssr142109 16 91728767 to 91728776 9 - TSS region transcription start site region 142109
Tssr142110 16 91729060 to 91729092 32 - TSS region transcription start site region 142110
Tssr139433 16 91729316 to 91729390 74 + TSS region transcription start site region 139433
Itsn1 16 91729353 to 91920591 191238 + protein coding gene intersectin 1 (SH3 domain protein 1A)
Tssr142111 16 91729381 to 91729392 11 - TSS region transcription start site region 142111
Tssr139434 16 91729402 to 91729435 33 + TSS region transcription start site region 139434
Tssr139435 16 91729436 to 91729474 38 + TSS region transcription start site region 139435
Tssr139436 16 91738929 to 91738963 34 + TSS region transcription start site region 139436
Tssr139437 16 91739271 to 91739285 14 + TSS region transcription start site region 139437
Tssr139438 16 91740112 to 91740137 25 + TSS region transcription start site region 139438
Tssr139439 16 91793561 to 91793572 11 + TSS region transcription start site region 139439
Tssr139440 16 91793596 to 91793614 18 + TSS region transcription start site region 139440
Tssr139441 16 91793877 to 91793892 15 + TSS region transcription start site region 139441
Tssr139442 16 91794087 to 91794091 4 + TSS region transcription start site region 139442
Tssr139443 16 91798439 to 91798477 38 + TSS region transcription start site region 139443
Tssr139444 16 91799211 to 91799231 20 + TSS region transcription start site region 139444
Tssr139445 16 91804613 to 91804650 37 + TSS region transcription start site region 139445
Tssr139446 16 91804653 to 91804661 8 + TSS region transcription start site region 139446
Tssr139447 16 91807190 to 91807209 19 + TSS region transcription start site region 139447
Tssr139448 16 91807220 to 91807236 16 + TSS region transcription start site region 139448
Tssr139449 16 91807362 to 91807384 22 + TSS region transcription start site region 139449
Tssr139450 16 91818284 to 91818289 5 + TSS region transcription start site region 139450
Tssr139451 16 91820444 to 91820453 9 + TSS region transcription start site region 139451
Tssr139452 16 91820537 to 91820551 14 + TSS region transcription start site region 139452
Tssr139453 16 91835363 to 91835367 4 + TSS region transcription start site region 139453
Tssr139454 16 91835434 to 91835437 3 + TSS region transcription start site region 139454
Tssr139455 16 91848864 to 91848881 17 + TSS region transcription start site region 139455
Tssr139456 16 91867902 to 91867944 42 + TSS region transcription start site region 139456
Cpgi8462 16 91869591 to 91869844 253 CpG island CpG island 8462
D16Mit155 16 91910432 to 91910577 145 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 155
Gm25245 16 91921309 to 91921415 106 - snRNA gene predicted gene, 25245
Gm15976 16 91924438 to 91928635 4197 + antisense lncRNA gene predicted gene 15976
Atp5o 16 91925223 to 91931630 6407 - protein coding gene ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
Cpgi8463 16 91931113 to 91931872 759 CpG island CpG island 8463
Tssr142112 16 91931554 to 91931618 64 - TSS region transcription start site region 142112
Tssr142113 16 91931623 to 91931632 9 - TSS region transcription start site region 142113
Tssr142114 16 91931643 to 91931654 11 - TSS region transcription start site region 142114
Gm36797 16 91936341 to 91940858 4517 - lncRNA gene predicted gene, 36797
Gm27773 16 91944071 to 91944148 77 - miRNA gene predicted gene, 27773
Tssr4960 16 91946661 to 91946662 1 + TSS region transcription start site region 4960
0610009F21Rik 16 91947326 to 91947785 459 unclassified gene RIKEN cDNA 0610009F21 gene
D430001F17Rik 16 91954010 to 91966230 12220 + antisense lncRNA gene RIKEN cDNA D430001F17 gene
Tssr142115 16 91964619 to 91964660 41 - TSS region transcription start site region 142115
Tssr142116 16 91964666 to 91964685 19 - TSS region transcription start site region 142116
Cpgi8464 16 91984571 to 91984868 297 CpG island CpG island 8464
Gm36905 16 91991195 to 91997309 6114 - lncRNA gene predicted gene, 36905
Gm18020 16 92009964 to 92010411 447 - pseudogene predicted gene, 18020
Tssr139457 16 92015400 to 92015407 7 + TSS region transcription start site region 139457
Gm23210 16 92042677 to 92042774 97 + snRNA gene predicted gene, 23210
Tssr139458 16 92052300 to 92052302 2 + TSS region transcription start site region 139458
Cpgi8465 16 92057629 to 92059208 1579 CpG island CpG island 8465
Tssr139459 16 92058076 to 92058086 10 + TSS region transcription start site region 139459
Tssr139460 16 92058313 to 92058328 15 + TSS region transcription start site region 139460
Gm49711 16 92058316 to 92187341 129025 + protein coding gene predicted gene, 49711
Slc5a3 16 92058322 to 92087473 29151 + protein coding gene solute carrier family 5 (inositol transporters), member 3
Mrps6 16 92058336 to 92112227 53891 + protein coding gene mitochondrial ribosomal protein S6
Tssr139461 16 92060150 to 92060154 4 + TSS region transcription start site region 139461
Tssr139462 16 92074997 to 92075007 10 + TSS region transcription start site region 139462
Tssr139463 16 92075444 to 92075450 6 + TSS region transcription start site region 139463
Tssr139464 16 92080869 to 92080874 5 + TSS region transcription start site region 139464
Tssr139465 16 92082492 to 92082514 22 + TSS region transcription start site region 139465
Tssr139466 16 92083713 to 92083720 7 + TSS region transcription start site region 139466
Gm16310 16 92094568 to 92096490 1922 + sense intronic lncRNA gene predicted gene 16310
Gm41496 16 92126288 to 92186528 60240 + lincRNA gene predicted gene, 41496
Gm41495 16 92154247 to 92156291 2044 + lincRNA gene predicted gene, 41495
Cpgi8466 16 92158581 to 92158797 216 CpG island CpG island 8466
Cpgi8467 16 92182976 to 92183219 243 CpG island CpG island 8467
Gm49716 16 92189062 to 92189503 441 - pseudogene predicted gene, 49716
Gm29880 16 92202901 to 92207488 4587 - lncRNA gene predicted gene, 29880
Gm41497 16 92245994 to 92249021 3027 + lncRNA gene predicted gene, 41497