Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:91098808-92353607

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286 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
H3f3a-ps2 16 91114189 to 91114599 410 - pseudogene H3 histone, family 3A, pseudogene 2
Cpgi8438 16 91129442 to 91129836 394 CpG island CpG island 8438
Gm49611 16 91133121 to 91133429 308 - pseudogene predicted gene, 49611
Gm49612 16 91135275 to 91135476 201 - pseudogene predicted gene, 49612
Gm41492 16 91138455 to 91159089 20634 - lincRNA gene predicted gene, 41492
Gm9881 16 91167712 to 91171608 3896 - protein coding gene predicted gene 9881
Cpgi8439 16 91169984 to 91170318 334 CpG island CpG island 8439
Gm49613 16 91174989 to 91175334 345 - pseudogene predicted gene, 49613
Tssr142076 16 91199947 to 91199992 45 - TSS region transcription start site region 142076
Cpgi8440 16 91211668 to 91212070 402 CpG island CpG island 8440
Cpgi8441 16 91219907 to 91220455 548 CpG island CpG island 8441
Tssr139336 16 91221078 to 91221080 2 + TSS region transcription start site region 139336
Gm49614 16 91222100 to 91222926 826 - unclassified gene predicted gene, 49614
Cpgi8442 16 91222160 to 91223841 1681 CpG island CpG island 8442
Cpgi8443 16 91224947 to 91227827 2880 CpG island CpG island 8443
Tssr139337 16 91225409 to 91225426 17 + TSS region transcription start site region 139337
Tssr139338 16 91225446 to 91225455 9 + TSS region transcription start site region 139338
Olig2 16 91225550 to 91228677 3127 + protein coding gene oligodendrocyte transcription factor 2
Tssr139339 16 91225563 to 91225579 16 + TSS region transcription start site region 139339
Cpgi8444 16 91228274 to 91228566 292 CpG island CpG island 8444
Cpgi8445 16 91232351 to 91232685 334 CpG island CpG island 8445
Gm37016 16 91262498 to 91263298 800 + unclassified gene predicted gene, 37016
Cpgi8446 16 91269505 to 91271839 2334 CpG island CpG island 8446
Tssr139340 16 91269727 to 91269733 6 + TSS region transcription start site region 139340
Tssr139341 16 91269759 to 91269778 19 + TSS region transcription start site region 139341
Olig1 16 91269772 to 91271933 2161 + protein coding gene oligodendrocyte transcription factor 1
Tssr139342 16 91269846 to 91269898 52 + TSS region transcription start site region 139342
Gm15966 16 91271777 to 91329043 57266 - lincRNA gene predicted gene 15966
Cpgi8447 16 91310514 to 91310717 203 CpG island CpG island 8447
Cpgi8448 16 91329023 to 91329305 282 CpG island CpG island 8448
Gm24695 16 91349702 to 91349784 82 - snRNA gene predicted gene, 24695
Tssr4954 16 91354839 to 91354859 20 + TSS region transcription start site region 4954
Tssr142077 16 91355234 to 91355252 18 - TSS region transcription start site region 142077
Tssr4955 16 91355337 to 91355369 32 - TSS region transcription start site region 4955
Tssr142078 16 91362761 to 91362772 11 - TSS region transcription start site region 142078
Tssr142079 16 91362777 to 91362788 11 - TSS region transcription start site region 142079
Gm36587 16 91365577 to 91379807 14230 - lncRNA gene predicted gene, 36587
Tssr142080 16 91367114 to 91367167 53 - TSS region transcription start site region 142080
D16Mit26 16 91370737 to 91370886 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 26
Cpgi8449 16 91372514 to 91373494 980 CpG island CpG island 8449
Tssr142081 16 91372674 to 91372699 25 - TSS region transcription start site region 142081
Ifnar2 16 91372783 to 91405589 32806 + protein coding gene interferon (alpha and beta) receptor 2
Tssr139343 16 91372786 to 91372864 78 + TSS region transcription start site region 139343
Tssr139344 16 91372865 to 91372878 13 + TSS region transcription start site region 139344
Tssr139345 16 91372882 to 91372893 11 + TSS region transcription start site region 139345
Tssr142082 16 91373099 to 91373111 12 - TSS region transcription start site region 142082
Tssr139346 16 91373209 to 91373253 44 + TSS region transcription start site region 139346
Tssr139347 16 91377537 to 91377548 11 + TSS region transcription start site region 139347
Tssr139348 16 91386000 to 91386039 39 + TSS region transcription start site region 139348
Tssr139349 16 91387773 to 91387781 8 + TSS region transcription start site region 139349
Tssr139350 16 91388018 to 91388042 24 + TSS region transcription start site region 139350
Tssr139351 16 91388064 to 91388081 17 + TSS region transcription start site region 139351
Gm21970 16 91391721 to 91419451 27730 + protein coding gene predicted gene 21970
Tssr139352 16 91391743 to 91391769 26 + TSS region transcription start site region 139352
Tssr139353 16 91391772 to 91391796 24 + TSS region transcription start site region 139353
Tssr139354 16 91391811 to 91391840 29 + TSS region transcription start site region 139354
Tssr139355 16 91393779 to 91393829 50 + TSS region transcription start site region 139355
Tssr139356 16 91393847 to 91393867 20 + TSS region transcription start site region 139356
Tssr139357 16 91397125 to 91397130 5 + TSS region transcription start site region 139357
Tssr139358 16 91399013 to 91399022 9 + TSS region transcription start site region 139358
Tssr139359 16 91399340 to 91399350 10 + TSS region transcription start site region 139359
Tssr139360 16 91399974 to 91400016 42 + TSS region transcription start site region 139360
Tssr139361 16 91405821 to 91405844 23 + TSS region transcription start site region 139361
Cpgi8450 16 91406032 to 91406825 793 CpG island CpG island 8450
Tssr139362 16 91406145 to 91406159 14 + TSS region transcription start site region 139362
Tssr139363 16 91406174 to 91406191 17 + TSS region transcription start site region 139363
Tssr139364 16 91406195 to 91406208 13 + TSS region transcription start site region 139364
Tssr139365 16 91406212 to 91406223 11 + TSS region transcription start site region 139365
Il10rb 16 91406235 to 91425834 19599 + protein coding gene interleukin 10 receptor, beta
Tssr139366 16 91406239 to 91406334 95 + TSS region transcription start site region 139366
Tssr139367 16 91406342 to 91406349 7 + TSS region transcription start site region 139367
Tssr139368 16 91406367 to 91406378 11 + TSS region transcription start site region 139368
Tssr139369 16 91406438 to 91406460 22 + TSS region transcription start site region 139369
Tssr139370 16 91406464 to 91406486 22 + TSS region transcription start site region 139370
Tssr142083 16 91406830 to 91406860 30 - TSS region transcription start site region 142083
Tssr142084 16 91406889 to 91406902 13 - TSS region transcription start site region 142084
Tssr139371 16 91406994 to 91407015 21 + TSS region transcription start site region 139371
Tssr139372 16 91407029 to 91407041 12 + TSS region transcription start site region 139372
Tssr139373 16 91407055 to 91407075 20 + TSS region transcription start site region 139373
Tssr139374 16 91407085 to 91407132 47 + TSS region transcription start site region 139374
Tssr139375 16 91407135 to 91407149 14 + TSS region transcription start site region 139375
Tssr139376 16 91407227 to 91407246 19 + TSS region transcription start site region 139376
Tssr139377 16 91407498 to 91407519 21 + TSS region transcription start site region 139377
Tssr139378 16 91416049 to 91416065 16 + TSS region transcription start site region 139378
Tssr139379 16 91420859 to 91420941 82 + TSS region transcription start site region 139379
Tssr139380 16 91420974 to 91421013 39 + TSS region transcription start site region 139380
Tssr139381 16 91421773 to 91421796 23 + TSS region transcription start site region 139381
Tssr139382 16 91424870 to 91424892 22 + TSS region transcription start site region 139382
Tssr139383 16 91425053 to 91425077 24 + TSS region transcription start site region 139383
Tssr142085 16 91425122 to 91425151 29 - TSS region transcription start site region 142085
Tssr139384 16 91425338 to 91425350 12 + TSS region transcription start site region 139384
Tssr139385 16 91425410 to 91425430 20 + TSS region transcription start site region 139385
Gm49625 16 91435293 to 91464803 29510 - lincRNA gene predicted gene, 49625
Tssr142086 16 91441541 to 91441542 1 - TSS region transcription start site region 142086
Tssr139386 16 91458405 to 91458427 22 + TSS region transcription start site region 139386
Gm46562 16 91458421 to 91458612 191 + pseudogene predicted gene, 46562
Tssr139387 16 91458717 to 91458748 31 + TSS region transcription start site region 139387
Tssr139388 16 91462139 to 91462152 13 + TSS region transcription start site region 139388
Cpgi8451 16 91464683 to 91465313 630 CpG island CpG island 8451
Tssr142087 16 91464815 to 91464828 13 - TSS region transcription start site region 142087
Tssr142088 16 91464837 to 91464891 54 - TSS region transcription start site region 142088
Tssr139389 16 91464990 to 91465019 29 + TSS region transcription start site region 139389
Tssr139390 16 91465021 to 91465032 11 + TSS region transcription start site region 139390
Tssr139391 16 91465033 to 91465051 18 + TSS region transcription start site region 139391
Tssr139392 16 91465079 to 91465111 32 + TSS region transcription start site region 139392
A930006K02Rik 16 91465104 to 91470123 5019 + lncRNA gene RIKEN cDNA A930006K02 gene
Gm49626 16 91465125 to 91476984 11859 + pseudogene predicted gene, 49626
Tssr139393 16 91465134 to 91465145 11 + TSS region transcription start site region 139393
Tssr139394 16 91465165 to 91465193 28 + TSS region transcription start site region 139394
Tssr142089 16 91466642 to 91466677 35 - TSS region transcription start site region 142089
Tssr139395 16 91475876 to 91475897 21 + TSS region transcription start site region 139395
Cpgi8452 16 91484850 to 91485682 832 CpG island CpG island 8452
Tssr142090 16 91484918 to 91484936 18 - TSS region transcription start site region 142090
Tssr139396 16 91485053 to 91485066 13 + TSS region transcription start site region 139396
Tssr139397 16 91485067 to 91485105 38 + TSS region transcription start site region 139397
Tssr139398 16 91485115 to 91485144 29 + TSS region transcription start site region 139398
Tssr139399 16 91485233 to 91485294 61 + TSS region transcription start site region 139399
Ifnar1 16 91485238 to 91507441 22203 + protein coding gene interferon (alpha and beta) receptor 1
Tssr139400 16 91485295 to 91485309 14 + TSS region transcription start site region 139400
Tssr139401 16 91489694 to 91489707 13 + TSS region transcription start site region 139401
Tssr139402 16 91492636 to 91492658 22 + TSS region transcription start site region 139402
Tssr139403 16 91506181 to 91506225 44 + TSS region transcription start site region 139403
Gm7856 16 91513141 to 91514633 1492 - pseudogene predicted gene 7856
Cpgi8453 16 91514579 to 91514800 221 CpG island CpG island 8453
Tssr142091 16 91514806 to 91514810 4 - TSS region transcription start site region 142091
Tssr4956 16 91522653 to 91522665 12 - TSS region transcription start site region 4956
Cpgi8454 16 91522998 to 91523162 164 CpG island CpG island 8454
Mir6367 16 91527443 to 91527544 101 - miRNA gene microRNA 6367
Tssr142092 16 91533593 to 91533609 16 - TSS region transcription start site region 142092
Tssr139404 16 91534068 to 91534076 8 + TSS region transcription start site region 139404
Tssr4957 16 91534646 to 91534673 27 + TSS region transcription start site region 4957
Tssr4958 16 91534684 to 91534699 15 - TSS region transcription start site region 4958
Gm7860 16 91539182 to 91540060 878 - pseudogene predicted gene 7860
Tssr139405 16 91545673 to 91545694 21 + TSS region transcription start site region 139405
Tssr139406 16 91545711 to 91545722 11 + TSS region transcription start site region 139406
Cpgi8455 16 91546420 to 91547646 1226 CpG island CpG island 8455
Tssr139407 16 91547048 to 91547114 66 + TSS region transcription start site region 139407
Ifngr2 16 91547094 to 91564007 16913 + protein coding gene interferon gamma receptor 2
Tssr139408 16 91547232 to 91547273 41 + TSS region transcription start site region 139408
Tssr142093 16 91547613 to 91547640 27 - TSS region transcription start site region 142093
Tssr139409 16 91547829 to 91547840 11 + TSS region transcription start site region 139409
Tssr142094 16 91548161 to 91548195 34 - TSS region transcription start site region 142094
Tssr142095 16 91548287 to 91548310 23 - TSS region transcription start site region 142095
Tssr142096 16 91549744 to 91549767 23 - TSS region transcription start site region 142096
Tssr139410 16 91550537 to 91550545 8 + TSS region transcription start site region 139410
Tssr139411 16 91560184 to 91560192 8 + TSS region transcription start site region 139411
Tssr139412 16 91560543 to 91560559 16 + TSS region transcription start site region 139412
Tssr139413 16 91561289 to 91561301 12 + TSS region transcription start site region 139413
Tssr139414 16 91561316 to 91561331 15 + TSS region transcription start site region 139414
Cpgi8456 16 91561562 to 91561867 305 CpG island CpG island 8456
Tssr139415 16 91561722 to 91561752 30 + TSS region transcription start site region 139415
Tssr139416 16 91563007 to 91563025 18 + TSS region transcription start site region 139416
Tssr139417 16 91563029 to 91563064 35 + TSS region transcription start site region 139417
Tssr139418 16 91563420 to 91563458 38 + TSS region transcription start site region 139418
Tssr139419 16 91563536 to 91563541 5 + TSS region transcription start site region 139419
Tssr139420 16 91563579 to 91563585 6 + TSS region transcription start site region 139420
Tmem50b 16 91574508 to 91597680 23172 - protein coding gene transmembrane protein 50B
Cpgi8457 16 91596824 to 91598197 1373 CpG island CpG island 8457
Tssr142097 16 91597386 to 91597415 29 - TSS region transcription start site region 142097
Tssr142098 16 91597636 to 91597735 99 - TSS region transcription start site region 142098
Gm15964 16 91611468 to 91623861 12393 + antisense lncRNA gene predicted gene 15964
Tssr139421 16 91611491 to 91611537 46 + TSS region transcription start site region 139421
Dnajc28 16 91614257 to 91618999 4742 - protein coding gene DnaJ heat shock protein family (Hsp40) member C28
Cpgi8458 16 91618615 to 91619109 494 CpG island CpG island 8458
Tssr142099 16 91618986 to 91619024 38 - TSS region transcription start site region 142099
Gart 16 91621186 to 91646952 25766 - protein coding gene phosphoribosylglycinamide formyltransferase
Tssr4959 16 91633820 to 91633867 47 + TSS region transcription start site region 4959
Tssr142100 16 91638019 to 91638030 11 - TSS region transcription start site region 142100
Cpgi8459 16 91646669 to 91648394 1725 CpG island CpG island 8459
Tssr142101 16 91646906 to 91646960 54 - TSS region transcription start site region 142101
Tssr139422 16 91647060 to 91647106 46 + TSS region transcription start site region 139422
Tssr142102 16 91647629 to 91647650 21 - TSS region transcription start site region 142102
Tssr142103 16 91647691 to 91647714 23 - TSS region transcription start site region 142103
Son 16 91647824 to 91679195 31371 + protein coding gene Son DNA binding protein
Tssr139423 16 91647842 to 91647858 16 + TSS region transcription start site region 139423
Tssr139424 16 91647859 to 91647905 46 + TSS region transcription start site region 139424
Tssr139425 16 91651678 to 91651700 22 + TSS region transcription start site region 139425
Tssr139426 16 91651746 to 91651777 31 + TSS region transcription start site region 139426
Gm36712 16 91651803 to 91653026 1223 + protein coding gene predicted gene, 36712
Tssr139427 16 91654621 to 91654675 54 + TSS region transcription start site region 139427
Tssr139428 16 91659512 to 91659538 26 + TSS region transcription start site region 139428
Tssr139429 16 91659658 to 91659713 55 + TSS region transcription start site region 139429
Tssr139430 16 91663380 to 91663401 21 + TSS region transcription start site region 139430
Tssr139431 16 91663958 to 91663970 12 + TSS region transcription start site region 139431
Tssr139432 16 91676479 to 91676483 4 + TSS region transcription start site region 139432
Donson 16 91676808 to 91688770 11962 - protein coding gene downstream neighbor of SON
Tssr142104 16 91685637 to 91685665 28 - TSS region transcription start site region 142104
Cpgi8460 16 91688179 to 91689303 1124 CpG island CpG island 8460
Tssr142105 16 91688709 to 91688774 65 - TSS region transcription start site region 142105
Tssr142106 16 91688791 to 91688802 11 - TSS region transcription start site region 142106
Gm10785 16 91688898 to 91715642 26744 + antisense lncRNA gene predicted gene 10785
Cryzl1 16 91689322 to 91728802 39480 - protein coding gene crystallin, zeta (quinone reductase)-like 1
Gm46543 16 91723808 to 91728607 4799 + lncRNA gene predicted gene, 46543
Cpgi8461 16 91728312 to 91730229 1917 CpG island CpG island 8461
Tssr142107 16 91728599 to 91728637 38 - TSS region transcription start site region 142107
Tssr142108 16 91728723 to 91728730 7 - TSS region transcription start site region 142108
Tssr142109 16 91728767 to 91728776 9 - TSS region transcription start site region 142109
Tssr142110 16 91729060 to 91729092 32 - TSS region transcription start site region 142110
Tssr139433 16 91729316 to 91729390 74 + TSS region transcription start site region 139433
Itsn1 16 91729353 to 91920591 191238 + protein coding gene intersectin 1 (SH3 domain protein 1A)