Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:90957712-91381608

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102 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Synj1 16 90936092 to 91011308 75216 - protein coding gene synaptojanin 1
Tssr142048 16 90961951 to 90961955 4 - TSS region transcription start site region 142048
Tssr142049 16 90972048 to 90972066 18 - TSS region transcription start site region 142049
Gm15965 16 90983907 to 90987237 3330 + antisense lncRNA gene predicted gene 15965
Tssr142050 16 90988751 to 90988770 19 - TSS region transcription start site region 142050
Gm41491 16 90994034 to 91003385 9351 + lncRNA gene predicted gene, 41491
Tssr139322 16 90997102 to 90997108 6 + TSS region transcription start site region 139322
Cpgi8434 16 91010347 to 91011792 1445 CpG island CpG island 8434
Tssr142051 16 91011005 to 91011023 18 - TSS region transcription start site region 142051
Tssr142052 16 91011029 to 91011069 40 - TSS region transcription start site region 142052
Tssr142053 16 91011093 to 91011104 11 - TSS region transcription start site region 142053
Tssr142054 16 91011129 to 91011170 41 - TSS region transcription start site region 142054
Tssr139323 16 91011240 to 91011267 27 + TSS region transcription start site region 139323
4930404I05Rik 16 91011249 to 91016503 5254 + lncRNA gene RIKEN cDNA 4930404I05 gene
Tssr139324 16 91011278 to 91011296 18 + TSS region transcription start site region 139324
Tssr139325 16 91011345 to 91011356 11 + TSS region transcription start site region 139325
Tssr142055 16 91011416 to 91011431 15 - TSS region transcription start site region 142055
Paxbp1 16 91014037 to 91044543 30506 - protein coding gene PAX3 and PAX7 binding protein 1
Tssr142056 16 91024363 to 91024376 13 - TSS region transcription start site region 142056
Tssr142057 16 91028841 to 91028845 4 - TSS region transcription start site region 142057
Tssr139326 16 91043481 to 91043503 22 + TSS region transcription start site region 139326
Tssr142058 16 91043510 to 91043521 11 - TSS region transcription start site region 142058
Tssr139327 16 91043527 to 91043590 63 + TSS region transcription start site region 139327
Cpgi8435 16 91043593 to 91045029 1436 CpG island CpG island 8435
Tssr142059 16 91043847 to 91043856 9 - TSS region transcription start site region 142059
Tssr142060 16 91043902 to 91043914 12 - TSS region transcription start site region 142060
Tssr142061 16 91044076 to 91044087 11 - TSS region transcription start site region 142061
Tssr142062 16 91044382 to 91044458 76 - TSS region transcription start site region 142062
Tssr142063 16 91044473 to 91044520 47 - TSS region transcription start site region 142063
4932438H23Rik 16 91044646 to 91069624 24978 - protein coding gene RIKEN cDNA 4932438H23 gene
4931406G06Rik 16 91044656 to 91056677 12021 + antisense lncRNA gene RIKEN cDNA 4931406G06 gene
Tssr142064 16 91044675 to 91044686 11 - TSS region transcription start site region 142064
Cpgi8436 16 91045134 to 91045296 162 CpG island CpG island 8436
Tssr139328 16 91046944 to 91046946 2 + TSS region transcription start site region 139328
Tssr139329 16 91048282 to 91048285 3 + TSS region transcription start site region 139329
Tssr142065 16 91056410 to 91056421 11 - TSS region transcription start site region 142065
Tssr4953 16 91056425 to 91056432 7 - TSS region transcription start site region 4953
Tssr142066 16 91056441 to 91056460 19 - TSS region transcription start site region 142066
Tssr142067 16 91056502 to 91056513 11 - TSS region transcription start site region 142067
Tssr139330 16 91056576 to 91056579 3 + TSS region transcription start site region 139330
Cpgi8437 16 91056700 to 91056857 157 CpG island CpG island 8437
Tssr139331 16 91056765 to 91056775 10 + TSS region transcription start site region 139331
Tssr142068 16 91061560 to 91061579 19 - TSS region transcription start site region 142068
Tssr142069 16 91061586 to 91061601 15 - TSS region transcription start site region 142069
Tssr139332 16 91061875 to 91061879 4 + TSS region transcription start site region 139332
Tssr142070 16 91063817 to 91063844 27 - TSS region transcription start site region 142070
Tssr142071 16 91063847 to 91063868 21 - TSS region transcription start site region 142071
Tssr139333 16 91063999 to 91064026 27 + TSS region transcription start site region 139333
Tssr139334 16 91064240 to 91064245 5 + TSS region transcription start site region 139334
Tssr142072 16 91069095 to 91069106 11 - TSS region transcription start site region 142072
Tssr142073 16 91069126 to 91069139 13 - TSS region transcription start site region 142073
Tssr142074 16 91069142 to 91069159 17 - TSS region transcription start site region 142074
Tssr142075 16 91069166 to 91069192 26 - TSS region transcription start site region 142075
Tssr139335 16 91082938 to 91082943 5 + TSS region transcription start site region 139335
H3f3a-ps2 16 91114189 to 91114599 410 - pseudogene H3 histone, family 3A, pseudogene 2
Cpgi8438 16 91129442 to 91129836 394 CpG island CpG island 8438
Gm49611 16 91133121 to 91133429 308 - pseudogene predicted gene, 49611
Gm49612 16 91135275 to 91135476 201 - pseudogene predicted gene, 49612
Gm41492 16 91138455 to 91159089 20634 - lincRNA gene predicted gene, 41492
Gm9881 16 91167712 to 91171608 3896 - protein coding gene predicted gene 9881
Cpgi8439 16 91169984 to 91170318 334 CpG island CpG island 8439
Gm49613 16 91174989 to 91175334 345 - pseudogene predicted gene, 49613
Tssr142076 16 91199947 to 91199992 45 - TSS region transcription start site region 142076
Cpgi8440 16 91211668 to 91212070 402 CpG island CpG island 8440
Cpgi8441 16 91219907 to 91220455 548 CpG island CpG island 8441
Tssr139336 16 91221078 to 91221080 2 + TSS region transcription start site region 139336
Gm49614 16 91222100 to 91222926 826 - unclassified gene predicted gene, 49614
Cpgi8442 16 91222160 to 91223841 1681 CpG island CpG island 8442
Cpgi8443 16 91224947 to 91227827 2880 CpG island CpG island 8443
Tssr139337 16 91225409 to 91225426 17 + TSS region transcription start site region 139337
Tssr139338 16 91225446 to 91225455 9 + TSS region transcription start site region 139338
Olig2 16 91225550 to 91228677 3127 + protein coding gene oligodendrocyte transcription factor 2
Tssr139339 16 91225563 to 91225579 16 + TSS region transcription start site region 139339
Cpgi8444 16 91228274 to 91228566 292 CpG island CpG island 8444
Cpgi8445 16 91232351 to 91232685 334 CpG island CpG island 8445
Gm37016 16 91262498 to 91263298 800 + unclassified gene predicted gene, 37016
Cpgi8446 16 91269505 to 91271839 2334 CpG island CpG island 8446
Tssr139340 16 91269727 to 91269733 6 + TSS region transcription start site region 139340
Tssr139341 16 91269759 to 91269778 19 + TSS region transcription start site region 139341
Olig1 16 91269772 to 91271933 2161 + protein coding gene oligodendrocyte transcription factor 1
Tssr139342 16 91269846 to 91269898 52 + TSS region transcription start site region 139342
Gm15966 16 91271777 to 91329043 57266 - lincRNA gene predicted gene 15966
Cpgi8447 16 91310514 to 91310717 203 CpG island CpG island 8447
Cpgi8448 16 91329023 to 91329305 282 CpG island CpG island 8448
Gm24695 16 91349702 to 91349784 82 - snRNA gene predicted gene, 24695
Tssr4954 16 91354839 to 91354859 20 + TSS region transcription start site region 4954
Tssr142077 16 91355234 to 91355252 18 - TSS region transcription start site region 142077
Tssr4955 16 91355337 to 91355369 32 - TSS region transcription start site region 4955
Tssr142078 16 91362761 to 91362772 11 - TSS region transcription start site region 142078
Tssr142079 16 91362777 to 91362788 11 - TSS region transcription start site region 142079
Gm36587 16 91365577 to 91379807 14230 - lncRNA gene predicted gene, 36587
Tssr142080 16 91367114 to 91367167 53 - TSS region transcription start site region 142080
D16Mit26 16 91370737 to 91370886 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 26
Cpgi8449 16 91372514 to 91373494 980 CpG island CpG island 8449
Tssr142081 16 91372674 to 91372699 25 - TSS region transcription start site region 142081
Ifnar2 16 91372783 to 91405589 32806 + protein coding gene interferon (alpha and beta) receptor 2
Tssr139343 16 91372786 to 91372864 78 + TSS region transcription start site region 139343
Tssr139344 16 91372865 to 91372878 13 + TSS region transcription start site region 139344
Tssr139345 16 91372882 to 91372893 11 + TSS region transcription start site region 139345
Tssr142082 16 91373099 to 91373111 12 - TSS region transcription start site region 142082
Tssr139346 16 91373209 to 91373253 44 + TSS region transcription start site region 139346
Tssr139347 16 91377537 to 91377548 11 + TSS region transcription start site region 139347