Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:90928935-91220122

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfap298 16 90925811 to 90934849 9038 - protein coding gene cilia and flagella associate protien 298
Cpgi8433 16 90934122 to 90935391 1269 CpG island CpG island 8433
Tssr142033 16 90934509 to 90934521 12 - TSS region transcription start site region 142033
Tssr142034 16 90934676 to 90934688 12 - TSS region transcription start site region 142034
Tssr142035 16 90934748 to 90934760 12 - TSS region transcription start site region 142035
Tssr142036 16 90934763 to 90934779 16 - TSS region transcription start site region 142036
Tssr142037 16 90934782 to 90934793 11 - TSS region transcription start site region 142037
Tssr142038 16 90934802 to 90934857 55 - TSS region transcription start site region 142038
Tssr142039 16 90934865 to 90934885 20 - TSS region transcription start site region 142039
4930534H18Rik 16 90934967 to 90935628 661 + bidirectional promoter lncRNA gene RIKEN cDNA 4930534H18 gene
Tssr139321 16 90935031 to 90935051 20 + TSS region transcription start site region 139321
Synj1 16 90936092 to 91011308 75216 - protein coding gene synaptojanin 1
Tssr142040 16 90937173 to 90937191 18 - TSS region transcription start site region 142040
Tssr142041 16 90937201 to 90937220 19 - TSS region transcription start site region 142041
Tssr142042 16 90937236 to 90937255 19 - TSS region transcription start site region 142042
Tssr142043 16 90937352 to 90937364 12 - TSS region transcription start site region 142043
Tssr142044 16 90938155 to 90938175 20 - TSS region transcription start site region 142044
Tssr142045 16 90946660 to 90946692 32 - TSS region transcription start site region 142045
Tssr142046 16 90946858 to 90946861 3 - TSS region transcription start site region 142046
Gm22933 16 90953795 to 90953868 73 + miRNA gene predicted gene, 22933
Tssr142047 16 90956865 to 90956910 45 - TSS region transcription start site region 142047
Tssr142048 16 90961951 to 90961955 4 - TSS region transcription start site region 142048
Tssr142049 16 90972048 to 90972066 18 - TSS region transcription start site region 142049
Gm15965 16 90983907 to 90987237 3330 + antisense lncRNA gene predicted gene 15965
Tssr142050 16 90988751 to 90988770 19 - TSS region transcription start site region 142050
Gm41491 16 90994034 to 91003385 9351 + lncRNA gene predicted gene, 41491
Tssr139322 16 90997102 to 90997108 6 + TSS region transcription start site region 139322
Cpgi8434 16 91010347 to 91011792 1445 CpG island CpG island 8434
Tssr142051 16 91011005 to 91011023 18 - TSS region transcription start site region 142051
Tssr142052 16 91011029 to 91011069 40 - TSS region transcription start site region 142052
Tssr142053 16 91011093 to 91011104 11 - TSS region transcription start site region 142053
Tssr142054 16 91011129 to 91011170 41 - TSS region transcription start site region 142054
Tssr139323 16 91011240 to 91011267 27 + TSS region transcription start site region 139323
4930404I05Rik 16 91011249 to 91016503 5254 + lncRNA gene RIKEN cDNA 4930404I05 gene
Tssr139324 16 91011278 to 91011296 18 + TSS region transcription start site region 139324
Tssr139325 16 91011345 to 91011356 11 + TSS region transcription start site region 139325
Tssr142055 16 91011416 to 91011431 15 - TSS region transcription start site region 142055
Paxbp1 16 91014037 to 91044543 30506 - protein coding gene PAX3 and PAX7 binding protein 1
Tssr142056 16 91024363 to 91024376 13 - TSS region transcription start site region 142056
Tssr142057 16 91028841 to 91028845 4 - TSS region transcription start site region 142057
Tssr139326 16 91043481 to 91043503 22 + TSS region transcription start site region 139326
Tssr142058 16 91043510 to 91043521 11 - TSS region transcription start site region 142058
Tssr139327 16 91043527 to 91043590 63 + TSS region transcription start site region 139327
Cpgi8435 16 91043593 to 91045029 1436 CpG island CpG island 8435
Tssr142059 16 91043847 to 91043856 9 - TSS region transcription start site region 142059
Tssr142060 16 91043902 to 91043914 12 - TSS region transcription start site region 142060
Tssr142061 16 91044076 to 91044087 11 - TSS region transcription start site region 142061
Tssr142062 16 91044382 to 91044458 76 - TSS region transcription start site region 142062
Tssr142063 16 91044473 to 91044520 47 - TSS region transcription start site region 142063
4932438H23Rik 16 91044646 to 91069624 24978 - protein coding gene RIKEN cDNA 4932438H23 gene
4931406G06Rik 16 91044656 to 91056677 12021 + antisense lncRNA gene RIKEN cDNA 4931406G06 gene
Tssr142064 16 91044675 to 91044686 11 - TSS region transcription start site region 142064
Cpgi8436 16 91045134 to 91045296 162 CpG island CpG island 8436
Tssr139328 16 91046944 to 91046946 2 + TSS region transcription start site region 139328
Tssr139329 16 91048282 to 91048285 3 + TSS region transcription start site region 139329
Tssr142065 16 91056410 to 91056421 11 - TSS region transcription start site region 142065
Tssr4953 16 91056425 to 91056432 7 - TSS region transcription start site region 4953
Tssr142066 16 91056441 to 91056460 19 - TSS region transcription start site region 142066
Tssr142067 16 91056502 to 91056513 11 - TSS region transcription start site region 142067
Tssr139330 16 91056576 to 91056579 3 + TSS region transcription start site region 139330
Cpgi8437 16 91056700 to 91056857 157 CpG island CpG island 8437
Tssr139331 16 91056765 to 91056775 10 + TSS region transcription start site region 139331
Tssr142068 16 91061560 to 91061579 19 - TSS region transcription start site region 142068
Tssr142069 16 91061586 to 91061601 15 - TSS region transcription start site region 142069
Tssr139332 16 91061875 to 91061879 4 + TSS region transcription start site region 139332
Tssr142070 16 91063817 to 91063844 27 - TSS region transcription start site region 142070
Tssr142071 16 91063847 to 91063868 21 - TSS region transcription start site region 142071
Tssr139333 16 91063999 to 91064026 27 + TSS region transcription start site region 139333
Tssr139334 16 91064240 to 91064245 5 + TSS region transcription start site region 139334
Tssr142072 16 91069095 to 91069106 11 - TSS region transcription start site region 142072
Tssr142073 16 91069126 to 91069139 13 - TSS region transcription start site region 142073
Tssr142074 16 91069142 to 91069159 17 - TSS region transcription start site region 142074
Tssr142075 16 91069166 to 91069192 26 - TSS region transcription start site region 142075
Tssr139335 16 91082938 to 91082943 5 + TSS region transcription start site region 139335
H3f3a-ps2 16 91114189 to 91114599 410 - pseudogene H3 histone, family 3A, pseudogene 2
Cpgi8438 16 91129442 to 91129836 394 CpG island CpG island 8438
Gm49611 16 91133121 to 91133429 308 - pseudogene predicted gene, 49611
Gm49612 16 91135275 to 91135476 201 - pseudogene predicted gene, 49612
Gm41492 16 91138455 to 91159089 20634 - lincRNA gene predicted gene, 41492
Gm9881 16 91167712 to 91171608 3896 - protein coding gene predicted gene 9881
Cpgi8439 16 91169984 to 91170318 334 CpG island CpG island 8439
Gm49613 16 91174989 to 91175334 345 - pseudogene predicted gene, 49613
Tssr142076 16 91199947 to 91199992 45 - TSS region transcription start site region 142076
Cpgi8440 16 91211668 to 91212070 402 CpG island CpG island 8440
Cpgi8441 16 91219907 to 91220455 548 CpG island CpG island 8441