Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:90691719-91040109

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700084M22Rik 16 90694366 to 90694750 384 unclassified gene RIKEN cDNA 1700084M22 gene
Tssr4951 16 90708849 to 90708850 1 + TSS region transcription start site region 4951
Gm46569 16 90712023 to 90716149 4126 + lncRNA gene predicted gene, 46569
Mis18a 16 90719312 to 90727371 8059 - protein coding gene MIS18 kinetochore protein A
Tssr142027 16 90726763 to 90726777 14 - TSS region transcription start site region 142027
Tssr142028 16 90726779 to 90726793 14 - TSS region transcription start site region 142028
Tssr142029 16 90726800 to 90726805 5 - TSS region transcription start site region 142029
Cpgi8429 16 90726849 to 90727844 995 CpG island CpG island 8429
Tssr142030 16 90727329 to 90727386 57 - TSS region transcription start site region 142030
Tssr139296 16 90727490 to 90727531 41 + TSS region transcription start site region 139296
Gm17518 16 90727512 to 90729120 1608 + lincRNA gene predicted gene, 17518
Tssr139297 16 90738105 to 90738113 8 + TSS region transcription start site region 139297
Tssr139298 16 90738190 to 90738212 22 + TSS region transcription start site region 139298
Tssr139299 16 90738222 to 90738238 16 + TSS region transcription start site region 139299
Tssr139300 16 90738244 to 90738247 3 + TSS region transcription start site region 139300
Tssr139301 16 90738268 to 90738282 14 + TSS region transcription start site region 139301
Tssr139302 16 90738300 to 90738311 11 + TSS region transcription start site region 139302
Mrap 16 90738324 to 90749776 11452 + protein coding gene melanocortin 2 receptor accessory protein
Tssr139303 16 90738326 to 90738340 14 + TSS region transcription start site region 139303
Tssr139304 16 90738344 to 90738430 86 + TSS region transcription start site region 139304
Tssr139305 16 90738440 to 90738458 18 + TSS region transcription start site region 139305
Tssr139306 16 90738488 to 90738498 10 + TSS region transcription start site region 139306
Tssr139307 16 90738508 to 90738519 11 + TSS region transcription start site region 139307
Tssr139308 16 90738531 to 90738564 33 + TSS region transcription start site region 139308
Tssr139309 16 90741210 to 90741211 1 + TSS region transcription start site region 139309
Tssr4952 16 90747316 to 90747323 7 + TSS region transcription start site region 4952
Tssr142031 16 90749645 to 90749681 36 - TSS region transcription start site region 142031
Urb1 16 90751527 to 90810413 58886 - protein coding gene URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
Cpgi8430 16 90809968 to 90810635 667 CpG island CpG island 8430
Tssr142032 16 90810365 to 90810429 64 - TSS region transcription start site region 142032
Tssr139310 16 90816519 to 90816522 3 + TSS region transcription start site region 139310
Eva1c 16 90826719 to 90905109 78390 + protein coding gene eva-1 homolog C (C. elegans)
Tssr139311 16 90826742 to 90826757 15 + TSS region transcription start site region 139311
Cpgi8431 16 90829869 to 90831887 2018 CpG island CpG island 8431
Tssr139312 16 90830081 to 90830102 21 + TSS region transcription start site region 139312
Tssr139313 16 90830116 to 90830133 17 + TSS region transcription start site region 139313
Tssr139314 16 90830405 to 90830425 20 + TSS region transcription start site region 139314
Tssr139315 16 90830830 to 90830878 48 + TSS region transcription start site region 139315
Tssr139316 16 90831129 to 90831150 21 + TSS region transcription start site region 139316
Tssr139317 16 90831215 to 90831224 9 + TSS region transcription start site region 139317
Tssr139318 16 90832771 to 90832777 6 + TSS region transcription start site region 139318
Gm36363 16 90836596 to 90850963 14367 - antisense lncRNA gene predicted gene, 36363
Tssr139319 16 90846629 to 90846631 2 + TSS region transcription start site region 139319
Cpgi8432 16 90875842 to 90876015 173 CpG island CpG island 8432
Gm7831 16 90915180 to 90915726 546 + pseudogene predicted gene 7831
Tssr139320 16 90924829 to 90924850 21 + TSS region transcription start site region 139320
Gm49727 16 90925532 to 90928110 2578 + unclassified gene predicted gene, 49727
Cfap298 16 90925811 to 90934849 9038 - protein coding gene cilia and flagella associate protien 298
Cpgi8433 16 90934122 to 90935391 1269 CpG island CpG island 8433
Tssr142033 16 90934509 to 90934521 12 - TSS region transcription start site region 142033
Tssr142034 16 90934676 to 90934688 12 - TSS region transcription start site region 142034
Tssr142035 16 90934748 to 90934760 12 - TSS region transcription start site region 142035
Tssr142036 16 90934763 to 90934779 16 - TSS region transcription start site region 142036
Tssr142037 16 90934782 to 90934793 11 - TSS region transcription start site region 142037
Tssr142038 16 90934802 to 90934857 55 - TSS region transcription start site region 142038
Tssr142039 16 90934865 to 90934885 20 - TSS region transcription start site region 142039
4930534H18Rik 16 90934967 to 90935628 661 + bidirectional promoter lncRNA gene RIKEN cDNA 4930534H18 gene
Tssr139321 16 90935031 to 90935051 20 + TSS region transcription start site region 139321
Synj1 16 90936092 to 91011308 75216 - protein coding gene synaptojanin 1
Tssr142040 16 90937173 to 90937191 18 - TSS region transcription start site region 142040
Tssr142041 16 90937201 to 90937220 19 - TSS region transcription start site region 142041
Tssr142042 16 90937236 to 90937255 19 - TSS region transcription start site region 142042
Tssr142043 16 90937352 to 90937364 12 - TSS region transcription start site region 142043
Tssr142044 16 90938155 to 90938175 20 - TSS region transcription start site region 142044
Tssr142045 16 90946660 to 90946692 32 - TSS region transcription start site region 142045
Tssr142046 16 90946858 to 90946861 3 - TSS region transcription start site region 142046
Gm22933 16 90953795 to 90953868 73 + miRNA gene predicted gene, 22933
Tssr142047 16 90956865 to 90956910 45 - TSS region transcription start site region 142047
Tssr142048 16 90961951 to 90961955 4 - TSS region transcription start site region 142048
Tssr142049 16 90972048 to 90972066 18 - TSS region transcription start site region 142049
Gm15965 16 90983907 to 90987237 3330 + antisense lncRNA gene predicted gene 15965
Tssr142050 16 90988751 to 90988770 19 - TSS region transcription start site region 142050
Gm41491 16 90994034 to 91003385 9351 + lncRNA gene predicted gene, 41491
Tssr139322 16 90997102 to 90997108 6 + TSS region transcription start site region 139322
Cpgi8434 16 91010347 to 91011792 1445 CpG island CpG island 8434
Tssr142051 16 91011005 to 91011023 18 - TSS region transcription start site region 142051
Tssr142052 16 91011029 to 91011069 40 - TSS region transcription start site region 142052
Tssr142053 16 91011093 to 91011104 11 - TSS region transcription start site region 142053
Tssr142054 16 91011129 to 91011170 41 - TSS region transcription start site region 142054
Tssr139323 16 91011240 to 91011267 27 + TSS region transcription start site region 139323
4930404I05Rik 16 91011249 to 91016503 5254 + lncRNA gene RIKEN cDNA 4930404I05 gene
Tssr139324 16 91011278 to 91011296 18 + TSS region transcription start site region 139324
Tssr139325 16 91011345 to 91011356 11 + TSS region transcription start site region 139325
Tssr142055 16 91011416 to 91011431 15 - TSS region transcription start site region 142055
Paxbp1 16 91014037 to 91044543 30506 - protein coding gene PAX3 and PAX7 binding protein 1
Tssr142056 16 91024363 to 91024376 13 - TSS region transcription start site region 142056
Tssr142057 16 91028841 to 91028845 4 - TSS region transcription start site region 142057