Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:90458244-91018247

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hunk 16 90386397 to 90499555 113158 + protein coding gene hormonally upregulated Neu-associated kinase
Tssr139293 16 90497168 to 90497200 32 + TSS region transcription start site region 139293
Tssr139294 16 90497204 to 90497213 9 + TSS region transcription start site region 139294
Tssr139295 16 90498497 to 90498506 9 + TSS region transcription start site region 139295
Gm35882 16 90500217 to 90519466 19249 - lncRNA gene predicted gene, 35882
Gm41490 16 90509100 to 90517541 8441 + lncRNA gene predicted gene, 41490
Cpgi8425 16 90520353 to 90520679 326 CpG island CpG island 8425
Cpgi8426 16 90524161 to 90524602 441 CpG island CpG island 8426
Gm35939 16 90525798 to 90529417 3619 + lncRNA gene predicted gene, 35939
Gm36001 16 90548636 to 90550609 1973 - lincRNA gene predicted gene, 36001
0710001L09Rik 16 90549863 to 90550178 315 unclassified gene RIKEN cDNA 0710001L09 gene
1110008E08Rik 16 90554164 to 90554886 722 + lincRNA gene RIKEN cDNA 1110008E08 gene
Gm36063 16 90586977 to 90627570 40593 - lncRNA gene predicted gene, 36063
Gm49714 16 90596773 to 90602619 5846 + lincRNA gene predicted gene, 49714
Gm23406 16 90602496 to 90602617 121 + snoRNA gene predicted gene, 23406
Tssr142026 16 90615959 to 90615960 1 - TSS region transcription start site region 142026
Gm36116 16 90627722 to 90629354 1632 + lncRNA gene predicted gene, 36116
D16Ium75 16 90628506 to 90628672 166 DNA segment DNA segment, Chr 16, Indiana University Medical 75
Gm49715 16 90668327 to 90670181 1854 + lincRNA gene predicted gene, 49715
Gm36169 16 90675512 to 90677771 2259 - lincRNA gene predicted gene, 36169
Cpgi8427 16 90680007 to 90680229 222 CpG island CpG island 8427
Cpgi8428 16 90690044 to 90690206 162 CpG island CpG island 8428
1700084M22Rik 16 90694366 to 90694750 384 unclassified gene RIKEN cDNA 1700084M22 gene
Tssr4951 16 90708849 to 90708850 1 + TSS region transcription start site region 4951
Gm46569 16 90712023 to 90716149 4126 + lncRNA gene predicted gene, 46569
Mis18a 16 90719312 to 90727371 8059 - protein coding gene MIS18 kinetochore protein A
Tssr142027 16 90726763 to 90726777 14 - TSS region transcription start site region 142027
Tssr142028 16 90726779 to 90726793 14 - TSS region transcription start site region 142028
Tssr142029 16 90726800 to 90726805 5 - TSS region transcription start site region 142029
Cpgi8429 16 90726849 to 90727844 995 CpG island CpG island 8429
Tssr142030 16 90727329 to 90727386 57 - TSS region transcription start site region 142030
Tssr139296 16 90727490 to 90727531 41 + TSS region transcription start site region 139296
Gm17518 16 90727512 to 90729120 1608 + lincRNA gene predicted gene, 17518
Tssr139297 16 90738105 to 90738113 8 + TSS region transcription start site region 139297
Tssr139298 16 90738190 to 90738212 22 + TSS region transcription start site region 139298
Tssr139299 16 90738222 to 90738238 16 + TSS region transcription start site region 139299
Tssr139300 16 90738244 to 90738247 3 + TSS region transcription start site region 139300
Tssr139301 16 90738268 to 90738282 14 + TSS region transcription start site region 139301
Tssr139302 16 90738300 to 90738311 11 + TSS region transcription start site region 139302
Mrap 16 90738324 to 90749776 11452 + protein coding gene melanocortin 2 receptor accessory protein
Tssr139303 16 90738326 to 90738340 14 + TSS region transcription start site region 139303
Tssr139304 16 90738344 to 90738430 86 + TSS region transcription start site region 139304
Tssr139305 16 90738440 to 90738458 18 + TSS region transcription start site region 139305
Tssr139306 16 90738488 to 90738498 10 + TSS region transcription start site region 139306
Tssr139307 16 90738508 to 90738519 11 + TSS region transcription start site region 139307
Tssr139308 16 90738531 to 90738564 33 + TSS region transcription start site region 139308
Tssr139309 16 90741210 to 90741211 1 + TSS region transcription start site region 139309
Tssr4952 16 90747316 to 90747323 7 + TSS region transcription start site region 4952
Tssr142031 16 90749645 to 90749681 36 - TSS region transcription start site region 142031
Urb1 16 90751527 to 90810413 58886 - protein coding gene URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
Cpgi8430 16 90809968 to 90810635 667 CpG island CpG island 8430
Tssr142032 16 90810365 to 90810429 64 - TSS region transcription start site region 142032
Tssr139310 16 90816519 to 90816522 3 + TSS region transcription start site region 139310
Eva1c 16 90826719 to 90905109 78390 + protein coding gene eva-1 homolog C (C. elegans)
Tssr139311 16 90826742 to 90826757 15 + TSS region transcription start site region 139311
Cpgi8431 16 90829869 to 90831887 2018 CpG island CpG island 8431
Tssr139312 16 90830081 to 90830102 21 + TSS region transcription start site region 139312
Tssr139313 16 90830116 to 90830133 17 + TSS region transcription start site region 139313
Tssr139314 16 90830405 to 90830425 20 + TSS region transcription start site region 139314
Tssr139315 16 90830830 to 90830878 48 + TSS region transcription start site region 139315
Tssr139316 16 90831129 to 90831150 21 + TSS region transcription start site region 139316
Tssr139317 16 90831215 to 90831224 9 + TSS region transcription start site region 139317
Tssr139318 16 90832771 to 90832777 6 + TSS region transcription start site region 139318
Gm36363 16 90836596 to 90850963 14367 - antisense lncRNA gene predicted gene, 36363
Tssr139319 16 90846629 to 90846631 2 + TSS region transcription start site region 139319
Cpgi8432 16 90875842 to 90876015 173 CpG island CpG island 8432
Gm7831 16 90915180 to 90915726 546 + pseudogene predicted gene 7831
Tssr139320 16 90924829 to 90924850 21 + TSS region transcription start site region 139320
Gm49727 16 90925532 to 90928110 2578 + unclassified gene predicted gene, 49727
Cfap298 16 90925811 to 90934849 9038 - protein coding gene cilia and flagella associate protien 298
Cpgi8433 16 90934122 to 90935391 1269 CpG island CpG island 8433
Tssr142033 16 90934509 to 90934521 12 - TSS region transcription start site region 142033
Tssr142034 16 90934676 to 90934688 12 - TSS region transcription start site region 142034
Tssr142035 16 90934748 to 90934760 12 - TSS region transcription start site region 142035
Tssr142036 16 90934763 to 90934779 16 - TSS region transcription start site region 142036
Tssr142037 16 90934782 to 90934793 11 - TSS region transcription start site region 142037
Tssr142038 16 90934802 to 90934857 55 - TSS region transcription start site region 142038
Tssr142039 16 90934865 to 90934885 20 - TSS region transcription start site region 142039
4930534H18Rik 16 90934967 to 90935628 661 + bidirectional promoter lncRNA gene RIKEN cDNA 4930534H18 gene
Tssr139321 16 90935031 to 90935051 20 + TSS region transcription start site region 139321
Synj1 16 90936092 to 91011308 75216 - protein coding gene synaptojanin 1
Tssr142040 16 90937173 to 90937191 18 - TSS region transcription start site region 142040
Tssr142041 16 90937201 to 90937220 19 - TSS region transcription start site region 142041
Tssr142042 16 90937236 to 90937255 19 - TSS region transcription start site region 142042
Tssr142043 16 90937352 to 90937364 12 - TSS region transcription start site region 142043
Tssr142044 16 90938155 to 90938175 20 - TSS region transcription start site region 142044
Tssr142045 16 90946660 to 90946692 32 - TSS region transcription start site region 142045
Tssr142046 16 90946858 to 90946861 3 - TSS region transcription start site region 142046
Gm22933 16 90953795 to 90953868 73 + miRNA gene predicted gene, 22933
Tssr142047 16 90956865 to 90956910 45 - TSS region transcription start site region 142047
Tssr142048 16 90961951 to 90961955 4 - TSS region transcription start site region 142048
Tssr142049 16 90972048 to 90972066 18 - TSS region transcription start site region 142049
Gm15965 16 90983907 to 90987237 3330 + antisense lncRNA gene predicted gene 15965
Tssr142050 16 90988751 to 90988770 19 - TSS region transcription start site region 142050
Gm41491 16 90994034 to 91003385 9351 + lncRNA gene predicted gene, 41491
Tssr139322 16 90997102 to 90997108 6 + TSS region transcription start site region 139322
Cpgi8434 16 91010347 to 91011792 1445 CpG island CpG island 8434
Tssr142051 16 91011005 to 91011023 18 - TSS region transcription start site region 142051
Tssr142052 16 91011029 to 91011069 40 - TSS region transcription start site region 142052
Tssr142053 16 91011093 to 91011104 11 - TSS region transcription start site region 142053
Tssr142054 16 91011129 to 91011170 41 - TSS region transcription start site region 142054
Tssr139323 16 91011240 to 91011267 27 + TSS region transcription start site region 139323
4930404I05Rik 16 91011249 to 91016503 5254 + lncRNA gene RIKEN cDNA 4930404I05 gene
Tssr139324 16 91011278 to 91011296 18 + TSS region transcription start site region 139324
Tssr139325 16 91011345 to 91011356 11 + TSS region transcription start site region 139325
Tssr142055 16 91011416 to 91011431 15 - TSS region transcription start site region 142055
Paxbp1 16 91014037 to 91044543 30506 - protein coding gene PAX3 and PAX7 binding protein 1