Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:90279684-92789699

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529 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aod1a 16 35626273 to 92776120 57149847 QTL autoimmune ovarian dysgenesis 1a
Scaf4 16 90228950 to 90284503 55553 - protein coding gene SR-related CTD-associated factor 4
Tssr139284 16 90283219 to 90283230 11 + TSS region transcription start site region 139284
Cpgi8421 16 90283267 to 90285342 2075 CpG island CpG island 8421
Tssr142022 16 90284271 to 90284285 14 - TSS region transcription start site region 142022
Tssr142023 16 90284300 to 90284348 48 - TSS region transcription start site region 142023
Tssr142024 16 90284382 to 90284393 11 - TSS region transcription start site region 142024
Tssr142025 16 90284412 to 90284498 86 - TSS region transcription start site region 142025
Tssr139285 16 90284557 to 90284626 69 + TSS region transcription start site region 139285
Cpgi8422 16 90314603 to 90314809 206 CpG island CpG island 8422
Gm49707 16 90314872 to 90331061 16189 + lincRNA gene predicted gene, 49707
Cpgi8423 16 90335767 to 90336041 274 CpG island CpG island 8423
Gm49708 16 90341595 to 90349642 8047 - unclassified non-coding RNA gene predicted gene, 49708
Gm49709 16 90349417 to 90362580 13163 + lincRNA gene predicted gene, 49709
Gm49710 16 90353182 to 90363117 9935 - lincRNA gene predicted gene, 49710
Cpgi8424 16 90385331 to 90387197 1866 CpG island CpG island 8424
Tssr139286 16 90385874 to 90385885 11 + TSS region transcription start site region 139286
Tssr139287 16 90385902 to 90385944 42 + TSS region transcription start site region 139287
Tssr139288 16 90385947 to 90385969 22 + TSS region transcription start site region 139288
Tssr139289 16 90386007 to 90386023 16 + TSS region transcription start site region 139289
Tssr139290 16 90386025 to 90386052 27 + TSS region transcription start site region 139290
Tssr139291 16 90386382 to 90386454 72 + TSS region transcription start site region 139291
Hunk 16 90386397 to 90499555 113158 + protein coding gene hormonally upregulated Neu-associated kinase
Tssr139292 16 90430511 to 90430534 23 + TSS region transcription start site region 139292
Tssr139293 16 90497168 to 90497200 32 + TSS region transcription start site region 139293
Tssr139294 16 90497204 to 90497213 9 + TSS region transcription start site region 139294
Tssr139295 16 90498497 to 90498506 9 + TSS region transcription start site region 139295
Gm35882 16 90500217 to 90519466 19249 - lncRNA gene predicted gene, 35882
Gm41490 16 90509100 to 90517541 8441 + lncRNA gene predicted gene, 41490
Cpgi8425 16 90520353 to 90520679 326 CpG island CpG island 8425
Cpgi8426 16 90524161 to 90524602 441 CpG island CpG island 8426
Gm35939 16 90525798 to 90529417 3619 + lncRNA gene predicted gene, 35939
Gm36001 16 90548636 to 90550609 1973 - lincRNA gene predicted gene, 36001
0710001L09Rik 16 90549863 to 90550178 315 unclassified gene RIKEN cDNA 0710001L09 gene
1110008E08Rik 16 90554164 to 90554886 722 + lincRNA gene RIKEN cDNA 1110008E08 gene
Gm36063 16 90586977 to 90627570 40593 - lncRNA gene predicted gene, 36063
Gm49714 16 90596773 to 90602619 5846 + lincRNA gene predicted gene, 49714
Gm23406 16 90602496 to 90602617 121 + snoRNA gene predicted gene, 23406
Tssr142026 16 90615959 to 90615960 1 - TSS region transcription start site region 142026
Gm36116 16 90627722 to 90629354 1632 + lncRNA gene predicted gene, 36116
D16Ium75 16 90628506 to 90628672 166 DNA segment DNA segment, Chr 16, Indiana University Medical 75
Gm49715 16 90668327 to 90670181 1854 + lincRNA gene predicted gene, 49715
Gm36169 16 90675512 to 90677771 2259 - lincRNA gene predicted gene, 36169
Cpgi8427 16 90680007 to 90680229 222 CpG island CpG island 8427
Cpgi8428 16 90690044 to 90690206 162 CpG island CpG island 8428
1700084M22Rik 16 90694366 to 90694750 384 unclassified gene RIKEN cDNA 1700084M22 gene
Tssr4951 16 90708849 to 90708850 1 + TSS region transcription start site region 4951
Gm46569 16 90712023 to 90716149 4126 + lncRNA gene predicted gene, 46569
Mis18a 16 90719312 to 90727371 8059 - protein coding gene MIS18 kinetochore protein A
Tssr142027 16 90726763 to 90726777 14 - TSS region transcription start site region 142027
Tssr142028 16 90726779 to 90726793 14 - TSS region transcription start site region 142028
Tssr142029 16 90726800 to 90726805 5 - TSS region transcription start site region 142029
Cpgi8429 16 90726849 to 90727844 995 CpG island CpG island 8429
Tssr142030 16 90727329 to 90727386 57 - TSS region transcription start site region 142030
Tssr139296 16 90727490 to 90727531 41 + TSS region transcription start site region 139296
Gm17518 16 90727512 to 90729120 1608 + lincRNA gene predicted gene, 17518
Tssr139297 16 90738105 to 90738113 8 + TSS region transcription start site region 139297
Tssr139298 16 90738190 to 90738212 22 + TSS region transcription start site region 139298
Tssr139299 16 90738222 to 90738238 16 + TSS region transcription start site region 139299
Tssr139300 16 90738244 to 90738247 3 + TSS region transcription start site region 139300
Tssr139301 16 90738268 to 90738282 14 + TSS region transcription start site region 139301
Tssr139302 16 90738300 to 90738311 11 + TSS region transcription start site region 139302
Mrap 16 90738324 to 90749776 11452 + protein coding gene melanocortin 2 receptor accessory protein
Tssr139303 16 90738326 to 90738340 14 + TSS region transcription start site region 139303
Tssr139304 16 90738344 to 90738430 86 + TSS region transcription start site region 139304
Tssr139305 16 90738440 to 90738458 18 + TSS region transcription start site region 139305
Tssr139306 16 90738488 to 90738498 10 + TSS region transcription start site region 139306
Tssr139307 16 90738508 to 90738519 11 + TSS region transcription start site region 139307
Tssr139308 16 90738531 to 90738564 33 + TSS region transcription start site region 139308
Tssr139309 16 90741210 to 90741211 1 + TSS region transcription start site region 139309
Tssr4952 16 90747316 to 90747323 7 + TSS region transcription start site region 4952
Tssr142031 16 90749645 to 90749681 36 - TSS region transcription start site region 142031
Urb1 16 90751527 to 90810413 58886 - protein coding gene URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
Cpgi8430 16 90809968 to 90810635 667 CpG island CpG island 8430
Tssr142032 16 90810365 to 90810429 64 - TSS region transcription start site region 142032
Tssr139310 16 90816519 to 90816522 3 + TSS region transcription start site region 139310
Eva1c 16 90826719 to 90905109 78390 + protein coding gene eva-1 homolog C (C. elegans)
Tssr139311 16 90826742 to 90826757 15 + TSS region transcription start site region 139311
Cpgi8431 16 90829869 to 90831887 2018 CpG island CpG island 8431
Tssr139312 16 90830081 to 90830102 21 + TSS region transcription start site region 139312
Tssr139313 16 90830116 to 90830133 17 + TSS region transcription start site region 139313
Tssr139314 16 90830405 to 90830425 20 + TSS region transcription start site region 139314
Tssr139315 16 90830830 to 90830878 48 + TSS region transcription start site region 139315
Tssr139316 16 90831129 to 90831150 21 + TSS region transcription start site region 139316
Tssr139317 16 90831215 to 90831224 9 + TSS region transcription start site region 139317
Tssr139318 16 90832771 to 90832777 6 + TSS region transcription start site region 139318
Gm36363 16 90836596 to 90850963 14367 - antisense lncRNA gene predicted gene, 36363
Tssr139319 16 90846629 to 90846631 2 + TSS region transcription start site region 139319
Cpgi8432 16 90875842 to 90876015 173 CpG island CpG island 8432
Gm7831 16 90915180 to 90915726 546 + pseudogene predicted gene 7831
Tssr139320 16 90924829 to 90924850 21 + TSS region transcription start site region 139320
Gm49727 16 90925532 to 90928110 2578 + unclassified gene predicted gene, 49727
Cfap298 16 90925811 to 90934849 9038 - protein coding gene cilia and flagella associate protien 298
Cpgi8433 16 90934122 to 90935391 1269 CpG island CpG island 8433
Tssr142033 16 90934509 to 90934521 12 - TSS region transcription start site region 142033
Tssr142034 16 90934676 to 90934688 12 - TSS region transcription start site region 142034
Tssr142035 16 90934748 to 90934760 12 - TSS region transcription start site region 142035
Tssr142036 16 90934763 to 90934779 16 - TSS region transcription start site region 142036
Tssr142037 16 90934782 to 90934793 11 - TSS region transcription start site region 142037
Tssr142038 16 90934802 to 90934857 55 - TSS region transcription start site region 142038
Tssr142039 16 90934865 to 90934885 20 - TSS region transcription start site region 142039
4930534H18Rik 16 90934967 to 90935628 661 + bidirectional promoter lncRNA gene RIKEN cDNA 4930534H18 gene
Tssr139321 16 90935031 to 90935051 20 + TSS region transcription start site region 139321
Synj1 16 90936092 to 91011308 75216 - protein coding gene synaptojanin 1
Tssr142040 16 90937173 to 90937191 18 - TSS region transcription start site region 142040
Tssr142041 16 90937201 to 90937220 19 - TSS region transcription start site region 142041
Tssr142042 16 90937236 to 90937255 19 - TSS region transcription start site region 142042
Tssr142043 16 90937352 to 90937364 12 - TSS region transcription start site region 142043
Tssr142044 16 90938155 to 90938175 20 - TSS region transcription start site region 142044
Tssr142045 16 90946660 to 90946692 32 - TSS region transcription start site region 142045
Tssr142046 16 90946858 to 90946861 3 - TSS region transcription start site region 142046
Gm22933 16 90953795 to 90953868 73 + miRNA gene predicted gene, 22933
Tssr142047 16 90956865 to 90956910 45 - TSS region transcription start site region 142047
Tssr142048 16 90961951 to 90961955 4 - TSS region transcription start site region 142048
Tssr142049 16 90972048 to 90972066 18 - TSS region transcription start site region 142049
Gm15965 16 90983907 to 90987237 3330 + antisense lncRNA gene predicted gene 15965
Tssr142050 16 90988751 to 90988770 19 - TSS region transcription start site region 142050
Gm41491 16 90994034 to 91003385 9351 + lncRNA gene predicted gene, 41491
Tssr139322 16 90997102 to 90997108 6 + TSS region transcription start site region 139322
Cpgi8434 16 91010347 to 91011792 1445 CpG island CpG island 8434
Tssr142051 16 91011005 to 91011023 18 - TSS region transcription start site region 142051
Tssr142052 16 91011029 to 91011069 40 - TSS region transcription start site region 142052
Tssr142053 16 91011093 to 91011104 11 - TSS region transcription start site region 142053
Tssr142054 16 91011129 to 91011170 41 - TSS region transcription start site region 142054
Tssr139323 16 91011240 to 91011267 27 + TSS region transcription start site region 139323
4930404I05Rik 16 91011249 to 91016503 5254 + lncRNA gene RIKEN cDNA 4930404I05 gene
Tssr139324 16 91011278 to 91011296 18 + TSS region transcription start site region 139324
Tssr139325 16 91011345 to 91011356 11 + TSS region transcription start site region 139325
Tssr142055 16 91011416 to 91011431 15 - TSS region transcription start site region 142055
Paxbp1 16 91014037 to 91044543 30506 - protein coding gene PAX3 and PAX7 binding protein 1
Tssr142056 16 91024363 to 91024376 13 - TSS region transcription start site region 142056
Tssr142057 16 91028841 to 91028845 4 - TSS region transcription start site region 142057
Tssr139326 16 91043481 to 91043503 22 + TSS region transcription start site region 139326
Tssr142058 16 91043510 to 91043521 11 - TSS region transcription start site region 142058
Tssr139327 16 91043527 to 91043590 63 + TSS region transcription start site region 139327
Cpgi8435 16 91043593 to 91045029 1436 CpG island CpG island 8435
Tssr142059 16 91043847 to 91043856 9 - TSS region transcription start site region 142059
Tssr142060 16 91043902 to 91043914 12 - TSS region transcription start site region 142060
Tssr142061 16 91044076 to 91044087 11 - TSS region transcription start site region 142061
Tssr142062 16 91044382 to 91044458 76 - TSS region transcription start site region 142062
Tssr142063 16 91044473 to 91044520 47 - TSS region transcription start site region 142063
4932438H23Rik 16 91044646 to 91069624 24978 - protein coding gene RIKEN cDNA 4932438H23 gene
4931406G06Rik 16 91044656 to 91056677 12021 + antisense lncRNA gene RIKEN cDNA 4931406G06 gene
Tssr142064 16 91044675 to 91044686 11 - TSS region transcription start site region 142064
Cpgi8436 16 91045134 to 91045296 162 CpG island CpG island 8436
Tssr139328 16 91046944 to 91046946 2 + TSS region transcription start site region 139328
Tssr139329 16 91048282 to 91048285 3 + TSS region transcription start site region 139329
Tssr142065 16 91056410 to 91056421 11 - TSS region transcription start site region 142065
Tssr4953 16 91056425 to 91056432 7 - TSS region transcription start site region 4953
Tssr142066 16 91056441 to 91056460 19 - TSS region transcription start site region 142066
Tssr142067 16 91056502 to 91056513 11 - TSS region transcription start site region 142067
Tssr139330 16 91056576 to 91056579 3 + TSS region transcription start site region 139330
Cpgi8437 16 91056700 to 91056857 157 CpG island CpG island 8437
Tssr139331 16 91056765 to 91056775 10 + TSS region transcription start site region 139331
Tssr142068 16 91061560 to 91061579 19 - TSS region transcription start site region 142068
Tssr142069 16 91061586 to 91061601 15 - TSS region transcription start site region 142069
Tssr139332 16 91061875 to 91061879 4 + TSS region transcription start site region 139332
Tssr142070 16 91063817 to 91063844 27 - TSS region transcription start site region 142070
Tssr142071 16 91063847 to 91063868 21 - TSS region transcription start site region 142071
Tssr139333 16 91063999 to 91064026 27 + TSS region transcription start site region 139333
Tssr139334 16 91064240 to 91064245 5 + TSS region transcription start site region 139334
Tssr142072 16 91069095 to 91069106 11 - TSS region transcription start site region 142072
Tssr142073 16 91069126 to 91069139 13 - TSS region transcription start site region 142073
Tssr142074 16 91069142 to 91069159 17 - TSS region transcription start site region 142074
Tssr142075 16 91069166 to 91069192 26 - TSS region transcription start site region 142075
Tssr139335 16 91082938 to 91082943 5 + TSS region transcription start site region 139335
H3f3a-ps2 16 91114189 to 91114599 410 - pseudogene H3 histone, family 3A, pseudogene 2
Cpgi8438 16 91129442 to 91129836 394 CpG island CpG island 8438
Gm49611 16 91133121 to 91133429 308 - pseudogene predicted gene, 49611
Gm49612 16 91135275 to 91135476 201 - pseudogene predicted gene, 49612
Gm41492 16 91138455 to 91159089 20634 - lincRNA gene predicted gene, 41492
Gm9881 16 91167712 to 91171608 3896 - protein coding gene predicted gene 9881
Cpgi8439 16 91169984 to 91170318 334 CpG island CpG island 8439
Gm49613 16 91174989 to 91175334 345 - pseudogene predicted gene, 49613
Tssr142076 16 91199947 to 91199992 45 - TSS region transcription start site region 142076
Cpgi8440 16 91211668 to 91212070 402 CpG island CpG island 8440
Cpgi8441 16 91219907 to 91220455 548 CpG island CpG island 8441
Tssr139336 16 91221078 to 91221080 2 + TSS region transcription start site region 139336
Gm49614 16 91222100 to 91222926 826 - unclassified gene predicted gene, 49614
Cpgi8442 16 91222160 to 91223841 1681 CpG island CpG island 8442
Cpgi8443 16 91224947 to 91227827 2880 CpG island CpG island 8443
Tssr139337 16 91225409 to 91225426 17 + TSS region transcription start site region 139337
Tssr139338 16 91225446 to 91225455 9 + TSS region transcription start site region 139338
Olig2 16 91225550 to 91228677 3127 + protein coding gene oligodendrocyte transcription factor 2
Tssr139339 16 91225563 to 91225579 16 + TSS region transcription start site region 139339
Cpgi8444 16 91228274 to 91228566 292 CpG island CpG island 8444
Cpgi8445 16 91232351 to 91232685 334 CpG island CpG island 8445
Gm37016 16 91262498 to 91263298 800 + unclassified gene predicted gene, 37016
Cpgi8446 16 91269505 to 91271839 2334 CpG island CpG island 8446
Tssr139340 16 91269727 to 91269733 6 + TSS region transcription start site region 139340
Tssr139341 16 91269759 to 91269778 19 + TSS region transcription start site region 139341
Olig1 16 91269772 to 91271933 2161 + protein coding gene oligodendrocyte transcription factor 1
Tssr139342 16 91269846 to 91269898 52 + TSS region transcription start site region 139342
Gm15966 16 91271777 to 91329043 57266 - lincRNA gene predicted gene 15966
Cpgi8447 16 91310514 to 91310717 203 CpG island CpG island 8447
Cpgi8448 16 91329023 to 91329305 282 CpG island CpG island 8448
Gm24695 16 91349702 to 91349784 82 - snRNA gene predicted gene, 24695
Tssr4954 16 91354839 to 91354859 20 + TSS region transcription start site region 4954
Tssr142077 16 91355234 to 91355252 18 - TSS region transcription start site region 142077
Tssr4955 16 91355337 to 91355369 32 - TSS region transcription start site region 4955