Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:90275798-90779417

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scaf4 16 90228950 to 90284503 55553 - protein coding gene SR-related CTD-associated factor 4
Tssr139284 16 90283219 to 90283230 11 + TSS region transcription start site region 139284
Cpgi8421 16 90283267 to 90285342 2075 CpG island CpG island 8421
Tssr142022 16 90284271 to 90284285 14 - TSS region transcription start site region 142022
Tssr142023 16 90284300 to 90284348 48 - TSS region transcription start site region 142023
Tssr142024 16 90284382 to 90284393 11 - TSS region transcription start site region 142024
Tssr142025 16 90284412 to 90284498 86 - TSS region transcription start site region 142025
Tssr139285 16 90284557 to 90284626 69 + TSS region transcription start site region 139285
Cpgi8422 16 90314603 to 90314809 206 CpG island CpG island 8422
Gm49707 16 90314872 to 90331061 16189 + lincRNA gene predicted gene, 49707
Cpgi8423 16 90335767 to 90336041 274 CpG island CpG island 8423
Gm49708 16 90341595 to 90349642 8047 - unclassified non-coding RNA gene predicted gene, 49708
Gm49709 16 90349417 to 90362580 13163 + lincRNA gene predicted gene, 49709
Gm49710 16 90353182 to 90363117 9935 - lincRNA gene predicted gene, 49710
Cpgi8424 16 90385331 to 90387197 1866 CpG island CpG island 8424
Tssr139286 16 90385874 to 90385885 11 + TSS region transcription start site region 139286
Tssr139287 16 90385902 to 90385944 42 + TSS region transcription start site region 139287
Tssr139288 16 90385947 to 90385969 22 + TSS region transcription start site region 139288
Tssr139289 16 90386007 to 90386023 16 + TSS region transcription start site region 139289
Tssr139290 16 90386025 to 90386052 27 + TSS region transcription start site region 139290
Tssr139291 16 90386382 to 90386454 72 + TSS region transcription start site region 139291
Hunk 16 90386397 to 90499555 113158 + protein coding gene hormonally upregulated Neu-associated kinase
Tssr139292 16 90430511 to 90430534 23 + TSS region transcription start site region 139292
Tssr139293 16 90497168 to 90497200 32 + TSS region transcription start site region 139293
Tssr139294 16 90497204 to 90497213 9 + TSS region transcription start site region 139294
Tssr139295 16 90498497 to 90498506 9 + TSS region transcription start site region 139295
Gm35882 16 90500217 to 90519466 19249 - lncRNA gene predicted gene, 35882
Gm41490 16 90509100 to 90517541 8441 + lncRNA gene predicted gene, 41490
Cpgi8425 16 90520353 to 90520679 326 CpG island CpG island 8425
Cpgi8426 16 90524161 to 90524602 441 CpG island CpG island 8426
Gm35939 16 90525798 to 90529417 3619 + lncRNA gene predicted gene, 35939
Gm36001 16 90548636 to 90550609 1973 - lincRNA gene predicted gene, 36001
0710001L09Rik 16 90549863 to 90550178 315 unclassified gene RIKEN cDNA 0710001L09 gene
1110008E08Rik 16 90554164 to 90554886 722 + lincRNA gene RIKEN cDNA 1110008E08 gene
Gm36063 16 90586977 to 90627570 40593 - lncRNA gene predicted gene, 36063
Gm49714 16 90596773 to 90602619 5846 + lincRNA gene predicted gene, 49714
Gm23406 16 90602496 to 90602617 121 + snoRNA gene predicted gene, 23406
Tssr142026 16 90615959 to 90615960 1 - TSS region transcription start site region 142026
Gm36116 16 90627722 to 90629354 1632 + lncRNA gene predicted gene, 36116
D16Ium75 16 90628506 to 90628672 166 DNA segment DNA segment, Chr 16, Indiana University Medical 75
Gm49715 16 90668327 to 90670181 1854 + lincRNA gene predicted gene, 49715
Gm36169 16 90675512 to 90677771 2259 - lincRNA gene predicted gene, 36169
Cpgi8427 16 90680007 to 90680229 222 CpG island CpG island 8427
Cpgi8428 16 90690044 to 90690206 162 CpG island CpG island 8428
1700084M22Rik 16 90694366 to 90694750 384 unclassified gene RIKEN cDNA 1700084M22 gene
Tssr4951 16 90708849 to 90708850 1 + TSS region transcription start site region 4951
Gm46569 16 90712023 to 90716149 4126 + lncRNA gene predicted gene, 46569
Mis18a 16 90719312 to 90727371 8059 - protein coding gene MIS18 kinetochore protein A
Tssr142027 16 90726763 to 90726777 14 - TSS region transcription start site region 142027
Tssr142028 16 90726779 to 90726793 14 - TSS region transcription start site region 142028
Tssr142029 16 90726800 to 90726805 5 - TSS region transcription start site region 142029
Cpgi8429 16 90726849 to 90727844 995 CpG island CpG island 8429
Tssr142030 16 90727329 to 90727386 57 - TSS region transcription start site region 142030
Tssr139296 16 90727490 to 90727531 41 + TSS region transcription start site region 139296
Gm17518 16 90727512 to 90729120 1608 + lincRNA gene predicted gene, 17518
Tssr139297 16 90738105 to 90738113 8 + TSS region transcription start site region 139297
Tssr139298 16 90738190 to 90738212 22 + TSS region transcription start site region 139298
Tssr139299 16 90738222 to 90738238 16 + TSS region transcription start site region 139299
Tssr139300 16 90738244 to 90738247 3 + TSS region transcription start site region 139300
Tssr139301 16 90738268 to 90738282 14 + TSS region transcription start site region 139301
Tssr139302 16 90738300 to 90738311 11 + TSS region transcription start site region 139302
Mrap 16 90738324 to 90749776 11452 + protein coding gene melanocortin 2 receptor accessory protein
Tssr139303 16 90738326 to 90738340 14 + TSS region transcription start site region 139303
Tssr139304 16 90738344 to 90738430 86 + TSS region transcription start site region 139304
Tssr139305 16 90738440 to 90738458 18 + TSS region transcription start site region 139305
Tssr139306 16 90738488 to 90738498 10 + TSS region transcription start site region 139306
Tssr139307 16 90738508 to 90738519 11 + TSS region transcription start site region 139307
Tssr139308 16 90738531 to 90738564 33 + TSS region transcription start site region 139308
Tssr139309 16 90741210 to 90741211 1 + TSS region transcription start site region 139309
Tssr4952 16 90747316 to 90747323 7 + TSS region transcription start site region 4952
Tssr142031 16 90749645 to 90749681 36 - TSS region transcription start site region 142031
Urb1 16 90751527 to 90810413 58886 - protein coding gene URB1 ribosome biogenesis 1 homolog (S. cerevisiae)