Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:90013950-90499503

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tiam1 16 89787111 to 90143769 356658 - protein coding gene T cell lymphoma invasion and metastasis 1
Cpgi8418 16 90043984 to 90044311 327 CpG island CpG island 8418
Tssr142014 16 90052364 to 90052367 3 - TSS region transcription start site region 142014
Gm41489 16 90080112 to 90086383 6271 + lncRNA gene predicted gene, 41489
Tssr139273 16 90089926 to 90089931 5 + TSS region transcription start site region 139273
Gm2805 16 90089983 to 90090496 513 + pseudogene predicted gene 2805
9430029E18Rik 16 90115761 to 90119596 3835 unclassified gene RIKEN cDNA 9430029E18 gene
Tssr142015 16 90138266 to 90138313 47 - TSS region transcription start site region 142015
Tssr139274 16 90140000 to 90140011 11 + TSS region transcription start site region 139274
Gm10789 16 90142237 to 90146827 4590 + lncRNA gene predicted gene 10789
Cpgi8419 16 90142281 to 90144781 2500 CpG island CpG island 8419
Tssr142016 16 90143764 to 90143775 11 - TSS region transcription start site region 142016
Tssr142017 16 90143781 to 90143794 13 - TSS region transcription start site region 142017
Tssr142018 16 90143808 to 90143823 15 - TSS region transcription start site region 142018
Tssr142019 16 90143829 to 90143857 28 - TSS region transcription start site region 142019
Tssr139275 16 90143982 to 90143996 14 + TSS region transcription start site region 139275
Gm7307 16 90163277 to 90163620 343 + pseudogene predicted gene 7307
D16Ium51 16 90194938 to 90195040 102 DNA segment DNA segment, Chr 16, Indiana University Medical 51
Gm35714 16 90197313 to 90203802 6489 - lncRNA gene predicted gene, 35714
Gm49704 16 90198148 to 90198658 510 + pseudogene predicted gene, 49704
Tssr139276 16 90219661 to 90219686 25 + TSS region transcription start site region 139276
Cpgi8420 16 90220300 to 90221603 1303 CpG island CpG island 8420
Tssr139277 16 90220534 to 90220537 3 + TSS region transcription start site region 139277
Tssr139278 16 90220569 to 90220589 20 + TSS region transcription start site region 139278
Tssr139279 16 90220594 to 90220610 16 + TSS region transcription start site region 139279
Tssr139280 16 90220620 to 90220632 12 + TSS region transcription start site region 139280
Tssr139281 16 90220636 to 90220641 5 + TSS region transcription start site region 139281
Tssr139282 16 90220708 to 90220725 17 + TSS region transcription start site region 139282
Tssr139283 16 90220747 to 90220771 24 + TSS region transcription start site region 139283
Sod1 16 90220754 to 90226329 5575 + protein coding gene superoxide dismutase 1, soluble
Scaf4 16 90228950 to 90284503 55553 - protein coding gene SR-related CTD-associated factor 4
Tssr142020 16 90259530 to 90259547 17 - TSS region transcription start site region 142020
Tssr142021 16 90265001 to 90265005 4 - TSS region transcription start site region 142021
Tssr139284 16 90283219 to 90283230 11 + TSS region transcription start site region 139284
Cpgi8421 16 90283267 to 90285342 2075 CpG island CpG island 8421
Tssr142022 16 90284271 to 90284285 14 - TSS region transcription start site region 142022
Tssr142023 16 90284300 to 90284348 48 - TSS region transcription start site region 142023
Tssr142024 16 90284382 to 90284393 11 - TSS region transcription start site region 142024
Tssr142025 16 90284412 to 90284498 86 - TSS region transcription start site region 142025
Tssr139285 16 90284557 to 90284626 69 + TSS region transcription start site region 139285
Cpgi8422 16 90314603 to 90314809 206 CpG island CpG island 8422
Gm49707 16 90314872 to 90331061 16189 + lincRNA gene predicted gene, 49707
Cpgi8423 16 90335767 to 90336041 274 CpG island CpG island 8423
Gm49708 16 90341595 to 90349642 8047 - unclassified non-coding RNA gene predicted gene, 49708
Gm49709 16 90349417 to 90362580 13163 + lincRNA gene predicted gene, 49709
Gm49710 16 90353182 to 90363117 9935 - lincRNA gene predicted gene, 49710
Cpgi8424 16 90385331 to 90387197 1866 CpG island CpG island 8424
Tssr139286 16 90385874 to 90385885 11 + TSS region transcription start site region 139286
Tssr139287 16 90385902 to 90385944 42 + TSS region transcription start site region 139287
Tssr139288 16 90385947 to 90385969 22 + TSS region transcription start site region 139288
Tssr139289 16 90386007 to 90386023 16 + TSS region transcription start site region 139289
Tssr139290 16 90386025 to 90386052 27 + TSS region transcription start site region 139290
Tssr139291 16 90386382 to 90386454 72 + TSS region transcription start site region 139291
Hunk 16 90386397 to 90499555 113158 + protein coding gene hormonally upregulated Neu-associated kinase
Tssr139292 16 90430511 to 90430534 23 + TSS region transcription start site region 139292
Tssr139293 16 90497168 to 90497200 32 + TSS region transcription start site region 139293
Tssr139294 16 90497204 to 90497213 9 + TSS region transcription start site region 139294
Tssr139295 16 90498497 to 90498506 9 + TSS region transcription start site region 139295