Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:89976595-90714642

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tiam1 16 89787111 to 90143769 356658 - protein coding gene T cell lymphoma invasion and metastasis 1
Cpgi8417 16 90011419 to 90011887 468 CpG island CpG island 8417
Cpgi8418 16 90043984 to 90044311 327 CpG island CpG island 8418
Tssr142014 16 90052364 to 90052367 3 - TSS region transcription start site region 142014
Gm41489 16 90080112 to 90086383 6271 + lncRNA gene predicted gene, 41489
Tssr139273 16 90089926 to 90089931 5 + TSS region transcription start site region 139273
Gm2805 16 90089983 to 90090496 513 + pseudogene predicted gene 2805
9430029E18Rik 16 90115761 to 90119596 3835 unclassified gene RIKEN cDNA 9430029E18 gene
Tssr142015 16 90138266 to 90138313 47 - TSS region transcription start site region 142015
Tssr139274 16 90140000 to 90140011 11 + TSS region transcription start site region 139274
Gm10789 16 90142237 to 90146827 4590 + lncRNA gene predicted gene 10789
Cpgi8419 16 90142281 to 90144781 2500 CpG island CpG island 8419
Tssr142016 16 90143764 to 90143775 11 - TSS region transcription start site region 142016
Tssr142017 16 90143781 to 90143794 13 - TSS region transcription start site region 142017
Tssr142018 16 90143808 to 90143823 15 - TSS region transcription start site region 142018
Tssr142019 16 90143829 to 90143857 28 - TSS region transcription start site region 142019
Tssr139275 16 90143982 to 90143996 14 + TSS region transcription start site region 139275
Gm7307 16 90163277 to 90163620 343 + pseudogene predicted gene 7307
D16Ium51 16 90194938 to 90195040 102 DNA segment DNA segment, Chr 16, Indiana University Medical 51
Gm35714 16 90197313 to 90203802 6489 - lncRNA gene predicted gene, 35714
Gm49704 16 90198148 to 90198658 510 + pseudogene predicted gene, 49704
Tssr139276 16 90219661 to 90219686 25 + TSS region transcription start site region 139276
Cpgi8420 16 90220300 to 90221603 1303 CpG island CpG island 8420
Tssr139277 16 90220534 to 90220537 3 + TSS region transcription start site region 139277
Tssr139278 16 90220569 to 90220589 20 + TSS region transcription start site region 139278
Tssr139279 16 90220594 to 90220610 16 + TSS region transcription start site region 139279
Tssr139280 16 90220620 to 90220632 12 + TSS region transcription start site region 139280
Tssr139281 16 90220636 to 90220641 5 + TSS region transcription start site region 139281
Tssr139282 16 90220708 to 90220725 17 + TSS region transcription start site region 139282
Tssr139283 16 90220747 to 90220771 24 + TSS region transcription start site region 139283
Sod1 16 90220754 to 90226329 5575 + protein coding gene superoxide dismutase 1, soluble
Scaf4 16 90228950 to 90284503 55553 - protein coding gene SR-related CTD-associated factor 4
Tssr142020 16 90259530 to 90259547 17 - TSS region transcription start site region 142020
Tssr142021 16 90265001 to 90265005 4 - TSS region transcription start site region 142021
Tssr139284 16 90283219 to 90283230 11 + TSS region transcription start site region 139284
Cpgi8421 16 90283267 to 90285342 2075 CpG island CpG island 8421
Tssr142022 16 90284271 to 90284285 14 - TSS region transcription start site region 142022
Tssr142023 16 90284300 to 90284348 48 - TSS region transcription start site region 142023
Tssr142024 16 90284382 to 90284393 11 - TSS region transcription start site region 142024
Tssr142025 16 90284412 to 90284498 86 - TSS region transcription start site region 142025
Tssr139285 16 90284557 to 90284626 69 + TSS region transcription start site region 139285
Cpgi8422 16 90314603 to 90314809 206 CpG island CpG island 8422
Gm49707 16 90314872 to 90331061 16189 + lincRNA gene predicted gene, 49707
Cpgi8423 16 90335767 to 90336041 274 CpG island CpG island 8423
Gm49708 16 90341595 to 90349642 8047 - unclassified non-coding RNA gene predicted gene, 49708
Gm49709 16 90349417 to 90362580 13163 + lincRNA gene predicted gene, 49709
Gm49710 16 90353182 to 90363117 9935 - lincRNA gene predicted gene, 49710
Cpgi8424 16 90385331 to 90387197 1866 CpG island CpG island 8424
Tssr139286 16 90385874 to 90385885 11 + TSS region transcription start site region 139286
Tssr139287 16 90385902 to 90385944 42 + TSS region transcription start site region 139287
Tssr139288 16 90385947 to 90385969 22 + TSS region transcription start site region 139288
Tssr139289 16 90386007 to 90386023 16 + TSS region transcription start site region 139289
Tssr139290 16 90386025 to 90386052 27 + TSS region transcription start site region 139290
Tssr139291 16 90386382 to 90386454 72 + TSS region transcription start site region 139291
Hunk 16 90386397 to 90499555 113158 + protein coding gene hormonally upregulated Neu-associated kinase
Tssr139292 16 90430511 to 90430534 23 + TSS region transcription start site region 139292
Tssr139293 16 90497168 to 90497200 32 + TSS region transcription start site region 139293
Tssr139294 16 90497204 to 90497213 9 + TSS region transcription start site region 139294
Tssr139295 16 90498497 to 90498506 9 + TSS region transcription start site region 139295
Gm35882 16 90500217 to 90519466 19249 - lncRNA gene predicted gene, 35882
Gm41490 16 90509100 to 90517541 8441 + lncRNA gene predicted gene, 41490
Cpgi8425 16 90520353 to 90520679 326 CpG island CpG island 8425
Cpgi8426 16 90524161 to 90524602 441 CpG island CpG island 8426
Gm35939 16 90525798 to 90529417 3619 + lncRNA gene predicted gene, 35939
Gm36001 16 90548636 to 90550609 1973 - lincRNA gene predicted gene, 36001
0710001L09Rik 16 90549863 to 90550178 315 unclassified gene RIKEN cDNA 0710001L09 gene
1110008E08Rik 16 90554164 to 90554886 722 + lincRNA gene RIKEN cDNA 1110008E08 gene
Gm36063 16 90586977 to 90627570 40593 - lncRNA gene predicted gene, 36063
Gm49714 16 90596773 to 90602619 5846 + lincRNA gene predicted gene, 49714
Gm23406 16 90602496 to 90602617 121 + snoRNA gene predicted gene, 23406
Tssr142026 16 90615959 to 90615960 1 - TSS region transcription start site region 142026
Gm36116 16 90627722 to 90629354 1632 + lncRNA gene predicted gene, 36116
D16Ium75 16 90628506 to 90628672 166 DNA segment DNA segment, Chr 16, Indiana University Medical 75
Gm49715 16 90668327 to 90670181 1854 + lincRNA gene predicted gene, 49715
Gm36169 16 90675512 to 90677771 2259 - lincRNA gene predicted gene, 36169
Cpgi8427 16 90680007 to 90680229 222 CpG island CpG island 8427
Cpgi8428 16 90690044 to 90690206 162 CpG island CpG island 8428
1700084M22Rik 16 90694366 to 90694750 384 unclassified gene RIKEN cDNA 1700084M22 gene
Tssr4951 16 90708849 to 90708850 1 + TSS region transcription start site region 4951
Gm46569 16 90712023 to 90716149 4126 + lncRNA gene predicted gene, 46569