Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:89381411-90271418

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Krtap21-1 16 89403218 to 89403868 650 - protein coding gene keratin associated protein 21-1
Tssr141985 16 89403803 to 89403806 3 - TSS region transcription start site region 141985
Tssr139269 16 89404695 to 89404699 4 + TSS region transcription start site region 139269
Krtap6-2 16 89419326 to 89420111 785 - protein coding gene keratin associated protein 6-2
Tssr141986 16 89420127 to 89420134 7 - TSS region transcription start site region 141986
Gm23655 16 89451495 to 89451599 104 - snRNA gene predicted gene, 23655
Krtap8-1 16 89487379 to 89487952 573 - protein coding gene keratin associated protein 8-1
Tssr141987 16 89487945 to 89487957 12 - TSS region transcription start site region 141987
Tssr4950 16 89488235 to 89488242 7 + TSS region transcription start site region 4950
Krtap7-1 16 89507703 to 89508323 620 - protein coding gene keratin associated protein 7-1
Tssr141988 16 89507738 to 89507743 5 - TSS region transcription start site region 141988
Tssr141989 16 89508313 to 89508327 14 - TSS region transcription start site region 141989
Tssr139270 16 89511979 to 89511985 6 + TSS region transcription start site region 139270
Krtap11-1 16 89570176 to 89571183 1007 - protein coding gene keratin associated protein 11-1
Tssr141990 16 89571144 to 89571153 9 - TSS region transcription start site region 141990
Tssr141991 16 89571171 to 89571190 19 - TSS region transcription start site region 141991
Gm49696 16 89584535 to 89584998 463 + lincRNA gene predicted gene, 49696
Tssr139271 16 89585954 to 89585962 8 + TSS region transcription start site region 139271
Gm17844 16 89632842 to 89633415 573 - pseudogene predicted gene, 17844
Gm35500 16 89645420 to 89719145 73725 - lncRNA gene predicted gene, 35500
Tssr141992 16 89701440 to 89701445 5 - TSS region transcription start site region 141992
Tssr141993 16 89733179 to 89733184 5 - TSS region transcription start site region 141993
Cpgi8407 16 89772820 to 89773446 626 CpG island CpG island 8407
Cpgi8408 16 89773880 to 89774094 214 CpG island CpG island 8408
Dp(16Tiam1-Kcnj6)6Yey 16 89787111 to 94997696 5210585 chromosomal duplication duplication, Chr 16, Y Eugene Yu 6
Del(16Tiam1-Kcnj6)7Yey 16 89787111 to 94997696 5210585 chromosomal deletion deletion, Chr 16, Y Eugene Yu 7
Tiam1 16 89787111 to 90143769 356658 - protein coding gene T cell lymphoma invasion and metastasis 1
Cpgi8409 16 89817954 to 89818164 210 CpG island CpG island 8409
Tssr141994 16 89818191 to 89818202 11 - TSS region transcription start site region 141994
Tssr141995 16 89818315 to 89818327 12 - TSS region transcription start site region 141995
Tssr141996 16 89818338 to 89818356 18 - TSS region transcription start site region 141996
Tssr141997 16 89818358 to 89818397 39 - TSS region transcription start site region 141997
Tssr139272 16 89826123 to 89826146 23 + TSS region transcription start site region 139272
Tssr141998 16 89826411 to 89826418 7 - TSS region transcription start site region 141998
Tssr141999 16 89833143 to 89833154 11 - TSS region transcription start site region 141999
Tssr142000 16 89833164 to 89833177 13 - TSS region transcription start site region 142000
Tssr142001 16 89833195 to 89833207 12 - TSS region transcription start site region 142001
Tssr142002 16 89833212 to 89833215 3 - TSS region transcription start site region 142002
Tssr142003 16 89837209 to 89837217 8 - TSS region transcription start site region 142003
Tssr142004 16 89837874 to 89837883 9 - TSS region transcription start site region 142004
Cpgi8410 16 89884777 to 89885254 477 CpG island CpG island 8410
Tssr142005 16 89888672 to 89888679 7 - TSS region transcription start site region 142005
Tssr142006 16 89888707 to 89888724 17 - TSS region transcription start site region 142006
Tssr142007 16 89897309 to 89897335 26 - TSS region transcription start site region 142007
Cpgi8411 16 89897748 to 89898434 686 CpG island CpG island 8411
Cpgi8412 16 89917587 to 89917763 176 CpG island CpG island 8412
Cpgi8413 16 89921496 to 89921886 390 CpG island CpG island 8413
Cpgi8414 16 89924985 to 89925186 201 CpG island CpG island 8414
Tssr142008 16 89948499 to 89948508 9 - TSS region transcription start site region 142008
Cpgi8415 16 89959062 to 89959229 167 CpG island CpG island 8415
Cpgi8416 16 89960277 to 89960868 591 CpG island CpG island 8416
Tssr142009 16 89960470 to 89960481 11 - TSS region transcription start site region 142009
Tssr142010 16 89960727 to 89960743 16 - TSS region transcription start site region 142010
Tssr142011 16 89960774 to 89960789 15 - TSS region transcription start site region 142011
Tssr142012 16 89960807 to 89960814 7 - TSS region transcription start site region 142012
Tssr142013 16 89960815 to 89960828 13 - TSS region transcription start site region 142013
Cpgi8417 16 90011419 to 90011887 468 CpG island CpG island 8417
Cpgi8418 16 90043984 to 90044311 327 CpG island CpG island 8418
Tssr142014 16 90052364 to 90052367 3 - TSS region transcription start site region 142014
Gm41489 16 90080112 to 90086383 6271 + lncRNA gene predicted gene, 41489
Tssr139273 16 90089926 to 90089931 5 + TSS region transcription start site region 139273
Gm2805 16 90089983 to 90090496 513 + pseudogene predicted gene 2805
9430029E18Rik 16 90115761 to 90119596 3835 unclassified gene RIKEN cDNA 9430029E18 gene
Tssr142015 16 90138266 to 90138313 47 - TSS region transcription start site region 142015
Tssr139274 16 90140000 to 90140011 11 + TSS region transcription start site region 139274
Gm10789 16 90142237 to 90146827 4590 + lncRNA gene predicted gene 10789
Cpgi8419 16 90142281 to 90144781 2500 CpG island CpG island 8419
Tssr142016 16 90143764 to 90143775 11 - TSS region transcription start site region 142016
Tssr142017 16 90143781 to 90143794 13 - TSS region transcription start site region 142017
Tssr142018 16 90143808 to 90143823 15 - TSS region transcription start site region 142018
Tssr142019 16 90143829 to 90143857 28 - TSS region transcription start site region 142019
Tssr139275 16 90143982 to 90143996 14 + TSS region transcription start site region 139275
Gm7307 16 90163277 to 90163620 343 + pseudogene predicted gene 7307
D16Ium51 16 90194938 to 90195040 102 DNA segment DNA segment, Chr 16, Indiana University Medical 51
Gm35714 16 90197313 to 90203802 6489 - lncRNA gene predicted gene, 35714
Gm49704 16 90198148 to 90198658 510 + pseudogene predicted gene, 49704
Tssr139276 16 90219661 to 90219686 25 + TSS region transcription start site region 139276
Cpgi8420 16 90220300 to 90221603 1303 CpG island CpG island 8420
Tssr139277 16 90220534 to 90220537 3 + TSS region transcription start site region 139277
Tssr139278 16 90220569 to 90220589 20 + TSS region transcription start site region 139278
Tssr139279 16 90220594 to 90220610 16 + TSS region transcription start site region 139279
Tssr139280 16 90220620 to 90220632 12 + TSS region transcription start site region 139280
Tssr139281 16 90220636 to 90220641 5 + TSS region transcription start site region 139281
Tssr139282 16 90220708 to 90220725 17 + TSS region transcription start site region 139282
Tssr139283 16 90220747 to 90220771 24 + TSS region transcription start site region 139283
Sod1 16 90220754 to 90226329 5575 + protein coding gene superoxide dismutase 1, soluble
Scaf4 16 90228950 to 90284503 55553 - protein coding gene SR-related CTD-associated factor 4
Tssr142020 16 90259530 to 90259547 17 - TSS region transcription start site region 142020
Tssr142021 16 90265001 to 90265005 4 - TSS region transcription start site region 142021