Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:89221440-90181445

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm34650 16 89222396 to 89222646 250 + protein coding gene predicted gene, 34650
Gm34733 16 89226811 to 89227103 292 + protein coding gene predicted gene, 34733
Tssr139263 16 89226826 to 89226831 5 + TSS region transcription start site region 139263
Gm34826 16 89230783 to 89231006 223 + protein coding gene predicted gene, 34826
Gm35004 16 89242633 to 89242808 175 + protein coding gene predicted gene, 35004
Gm35091 16 89247120 to 89247305 185 + protein coding gene predicted gene, 35091
Gm35174 16 89250970 to 89251267 297 + protein coding gene predicted gene, 35174
Tssr139264 16 89250997 to 89251003 6 + TSS region transcription start site region 139264
Gm35257 16 89260831 to 89261208 377 + protein coding gene predicted gene, 35257
Tssr139265 16 89274451 to 89274457 6 + TSS region transcription start site region 139265
Gm35342 16 89274509 to 89274667 158 + protein coding gene predicted gene, 35342
Gm41488 16 89276381 to 89278306 1925 - lncRNA gene predicted gene, 41488
Gm35427 16 89278331 to 89278788 457 + protein coding gene predicted gene, 35427
Tssr139266 16 89278408 to 89278410 2 + TSS region transcription start site region 139266
Tssr139267 16 89288327 to 89288334 7 + TSS region transcription start site region 139267
Gm33084 16 89288386 to 89288631 245 + protein coding gene predicted gene, 33084
Tssr139268 16 89306926 to 89306937 11 + TSS region transcription start site region 139268
D16Mit227 16 89345379 to 89345528 149 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-227
Krtap21-1 16 89403218 to 89403868 650 - protein coding gene keratin associated protein 21-1
Tssr141985 16 89403803 to 89403806 3 - TSS region transcription start site region 141985
Tssr139269 16 89404695 to 89404699 4 + TSS region transcription start site region 139269
Krtap6-2 16 89419326 to 89420111 785 - protein coding gene keratin associated protein 6-2
Tssr141986 16 89420127 to 89420134 7 - TSS region transcription start site region 141986
Gm23655 16 89451495 to 89451599 104 - snRNA gene predicted gene, 23655
Krtap8-1 16 89487379 to 89487952 573 - protein coding gene keratin associated protein 8-1
Tssr141987 16 89487945 to 89487957 12 - TSS region transcription start site region 141987
Tssr4950 16 89488235 to 89488242 7 + TSS region transcription start site region 4950
Krtap7-1 16 89507703 to 89508323 620 - protein coding gene keratin associated protein 7-1
Tssr141988 16 89507738 to 89507743 5 - TSS region transcription start site region 141988
Tssr141989 16 89508313 to 89508327 14 - TSS region transcription start site region 141989
Tssr139270 16 89511979 to 89511985 6 + TSS region transcription start site region 139270
Krtap11-1 16 89570176 to 89571183 1007 - protein coding gene keratin associated protein 11-1
Tssr141990 16 89571144 to 89571153 9 - TSS region transcription start site region 141990
Tssr141991 16 89571171 to 89571190 19 - TSS region transcription start site region 141991
Gm49696 16 89584535 to 89584998 463 + lincRNA gene predicted gene, 49696
Tssr139271 16 89585954 to 89585962 8 + TSS region transcription start site region 139271
Gm17844 16 89632842 to 89633415 573 - pseudogene predicted gene, 17844
Gm35500 16 89645420 to 89719145 73725 - lncRNA gene predicted gene, 35500
Tssr141992 16 89701440 to 89701445 5 - TSS region transcription start site region 141992
Tssr141993 16 89733179 to 89733184 5 - TSS region transcription start site region 141993
Cpgi8407 16 89772820 to 89773446 626 CpG island CpG island 8407
Cpgi8408 16 89773880 to 89774094 214 CpG island CpG island 8408
Del(16Tiam1-Kcnj6)7Yey 16 89787111 to 94997696 5210585 chromosomal deletion deletion, Chr 16, Y Eugene Yu 7
Dp(16Tiam1-Kcnj6)6Yey 16 89787111 to 94997696 5210585 chromosomal duplication duplication, Chr 16, Y Eugene Yu 6
Tiam1 16 89787111 to 90143769 356658 - protein coding gene T cell lymphoma invasion and metastasis 1
Cpgi8409 16 89817954 to 89818164 210 CpG island CpG island 8409
Tssr141994 16 89818191 to 89818202 11 - TSS region transcription start site region 141994
Tssr141995 16 89818315 to 89818327 12 - TSS region transcription start site region 141995
Tssr141996 16 89818338 to 89818356 18 - TSS region transcription start site region 141996
Tssr141997 16 89818358 to 89818397 39 - TSS region transcription start site region 141997
Tssr139272 16 89826123 to 89826146 23 + TSS region transcription start site region 139272
Tssr141998 16 89826411 to 89826418 7 - TSS region transcription start site region 141998
Tssr141999 16 89833143 to 89833154 11 - TSS region transcription start site region 141999
Tssr142000 16 89833164 to 89833177 13 - TSS region transcription start site region 142000
Tssr142001 16 89833195 to 89833207 12 - TSS region transcription start site region 142001
Tssr142002 16 89833212 to 89833215 3 - TSS region transcription start site region 142002
Tssr142003 16 89837209 to 89837217 8 - TSS region transcription start site region 142003
Tssr142004 16 89837874 to 89837883 9 - TSS region transcription start site region 142004
Cpgi8410 16 89884777 to 89885254 477 CpG island CpG island 8410
Tssr142005 16 89888672 to 89888679 7 - TSS region transcription start site region 142005
Tssr142006 16 89888707 to 89888724 17 - TSS region transcription start site region 142006
Tssr142007 16 89897309 to 89897335 26 - TSS region transcription start site region 142007
Cpgi8411 16 89897748 to 89898434 686 CpG island CpG island 8411
Cpgi8412 16 89917587 to 89917763 176 CpG island CpG island 8412
Cpgi8413 16 89921496 to 89921886 390 CpG island CpG island 8413
Cpgi8414 16 89924985 to 89925186 201 CpG island CpG island 8414
Tssr142008 16 89948499 to 89948508 9 - TSS region transcription start site region 142008
Cpgi8415 16 89959062 to 89959229 167 CpG island CpG island 8415
Cpgi8416 16 89960277 to 89960868 591 CpG island CpG island 8416
Tssr142009 16 89960470 to 89960481 11 - TSS region transcription start site region 142009
Tssr142010 16 89960727 to 89960743 16 - TSS region transcription start site region 142010
Tssr142011 16 89960774 to 89960789 15 - TSS region transcription start site region 142011
Tssr142012 16 89960807 to 89960814 7 - TSS region transcription start site region 142012
Tssr142013 16 89960815 to 89960828 13 - TSS region transcription start site region 142013
Cpgi8417 16 90011419 to 90011887 468 CpG island CpG island 8417
Cpgi8418 16 90043984 to 90044311 327 CpG island CpG island 8418
Tssr142014 16 90052364 to 90052367 3 - TSS region transcription start site region 142014
Gm41489 16 90080112 to 90086383 6271 + lncRNA gene predicted gene, 41489
Tssr139273 16 90089926 to 90089931 5 + TSS region transcription start site region 139273
Gm2805 16 90089983 to 90090496 513 + pseudogene predicted gene 2805
9430029E18Rik 16 90115761 to 90119596 3835 unclassified gene RIKEN cDNA 9430029E18 gene
Tssr142015 16 90138266 to 90138313 47 - TSS region transcription start site region 142015
Tssr139274 16 90140000 to 90140011 11 + TSS region transcription start site region 139274
Gm10789 16 90142237 to 90146827 4590 + lncRNA gene predicted gene 10789
Cpgi8419 16 90142281 to 90144781 2500 CpG island CpG island 8419
Tssr142016 16 90143764 to 90143775 11 - TSS region transcription start site region 142016
Tssr142017 16 90143781 to 90143794 13 - TSS region transcription start site region 142017
Tssr142018 16 90143808 to 90143823 15 - TSS region transcription start site region 142018
Tssr142019 16 90143829 to 90143857 28 - TSS region transcription start site region 142019
Tssr139275 16 90143982 to 90143996 14 + TSS region transcription start site region 139275
Gm7307 16 90163277 to 90163620 343 + pseudogene predicted gene 7307