Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:89158313-89858327

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41487 16 89069501 to 89160079 90578 - lncRNA gene predicted gene, 41487
Gm9789 16 89157952 to 89158348 396 + protein coding gene predicted gene 9789
Tssr139257 16 89169433 to 89169437 4 + TSS region transcription start site region 139257
Gm7735 16 89169490 to 89169648 158 + protein coding gene predicted gene 7735
Tssr139258 16 89174732 to 89174736 4 + TSS region transcription start site region 139258
1110057P08Rik 16 89174741 to 89175193 452 + protein coding gene RIKEN cDNA 1110057P08 gene
Tssr139259 16 89183259 to 89183263 4 + TSS region transcription start site region 139259
Gm34396 16 89183315 to 89183497 182 + protein coding gene predicted gene, 34396
Tssr139260 16 89205858 to 89205862 4 + TSS region transcription start site region 139260
Krtap20-2 16 89205861 to 89206394 533 + protein coding gene keratin associated protein 20-2
Tssr139261 16 89211475 to 89211481 6 + TSS region transcription start site region 139261
Gm34478 16 89211487 to 89211781 294 + protein coding gene predicted gene, 34478
Tssr139262 16 89215929 to 89215932 3 + TSS region transcription start site region 139262
Gm34566 16 89215952 to 89216160 208 + protein coding gene predicted gene, 34566
Gm34650 16 89222396 to 89222646 250 + protein coding gene predicted gene, 34650
Gm34733 16 89226811 to 89227103 292 + protein coding gene predicted gene, 34733
Tssr139263 16 89226826 to 89226831 5 + TSS region transcription start site region 139263
Gm34826 16 89230783 to 89231006 223 + protein coding gene predicted gene, 34826
Gm35004 16 89242633 to 89242808 175 + protein coding gene predicted gene, 35004
Gm35091 16 89247120 to 89247305 185 + protein coding gene predicted gene, 35091
Gm35174 16 89250970 to 89251267 297 + protein coding gene predicted gene, 35174
Tssr139264 16 89250997 to 89251003 6 + TSS region transcription start site region 139264
Gm35257 16 89260831 to 89261208 377 + protein coding gene predicted gene, 35257
Tssr139265 16 89274451 to 89274457 6 + TSS region transcription start site region 139265
Gm35342 16 89274509 to 89274667 158 + protein coding gene predicted gene, 35342
Gm41488 16 89276381 to 89278306 1925 - lncRNA gene predicted gene, 41488
Gm35427 16 89278331 to 89278788 457 + protein coding gene predicted gene, 35427
Tssr139266 16 89278408 to 89278410 2 + TSS region transcription start site region 139266
Tssr139267 16 89288327 to 89288334 7 + TSS region transcription start site region 139267
Gm33084 16 89288386 to 89288631 245 + protein coding gene predicted gene, 33084
Tssr139268 16 89306926 to 89306937 11 + TSS region transcription start site region 139268
D16Mit227 16 89345379 to 89345528 149 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-227
Krtap21-1 16 89403218 to 89403868 650 - protein coding gene keratin associated protein 21-1
Tssr141985 16 89403803 to 89403806 3 - TSS region transcription start site region 141985
Tssr139269 16 89404695 to 89404699 4 + TSS region transcription start site region 139269
Krtap6-2 16 89419326 to 89420111 785 - protein coding gene keratin associated protein 6-2
Tssr141986 16 89420127 to 89420134 7 - TSS region transcription start site region 141986
Gm23655 16 89451495 to 89451599 104 - snRNA gene predicted gene, 23655
Krtap8-1 16 89487379 to 89487952 573 - protein coding gene keratin associated protein 8-1
Tssr141987 16 89487945 to 89487957 12 - TSS region transcription start site region 141987
Tssr4950 16 89488235 to 89488242 7 + TSS region transcription start site region 4950
Krtap7-1 16 89507703 to 89508323 620 - protein coding gene keratin associated protein 7-1
Tssr141988 16 89507738 to 89507743 5 - TSS region transcription start site region 141988
Tssr141989 16 89508313 to 89508327 14 - TSS region transcription start site region 141989
Tssr139270 16 89511979 to 89511985 6 + TSS region transcription start site region 139270
Krtap11-1 16 89570176 to 89571183 1007 - protein coding gene keratin associated protein 11-1
Tssr141990 16 89571144 to 89571153 9 - TSS region transcription start site region 141990
Tssr141991 16 89571171 to 89571190 19 - TSS region transcription start site region 141991
Gm49696 16 89584535 to 89584998 463 + lincRNA gene predicted gene, 49696
Tssr139271 16 89585954 to 89585962 8 + TSS region transcription start site region 139271
Gm17844 16 89632842 to 89633415 573 - pseudogene predicted gene, 17844
Gm35500 16 89645420 to 89719145 73725 - lncRNA gene predicted gene, 35500
Tssr141992 16 89701440 to 89701445 5 - TSS region transcription start site region 141992
Tssr141993 16 89733179 to 89733184 5 - TSS region transcription start site region 141993
Cpgi8407 16 89772820 to 89773446 626 CpG island CpG island 8407
Cpgi8408 16 89773880 to 89774094 214 CpG island CpG island 8408
Del(16Tiam1-Kcnj6)7Yey 16 89787111 to 94997696 5210585 chromosomal deletion deletion, Chr 16, Y Eugene Yu 7
Dp(16Tiam1-Kcnj6)6Yey 16 89787111 to 94997696 5210585 chromosomal duplication duplication, Chr 16, Y Eugene Yu 6
Tiam1 16 89787111 to 90143769 356658 - protein coding gene T cell lymphoma invasion and metastasis 1
Cpgi8409 16 89817954 to 89818164 210 CpG island CpG island 8409
Tssr141994 16 89818191 to 89818202 11 - TSS region transcription start site region 141994
Tssr141995 16 89818315 to 89818327 12 - TSS region transcription start site region 141995
Tssr141996 16 89818338 to 89818356 18 - TSS region transcription start site region 141996
Tssr141997 16 89818358 to 89818397 39 - TSS region transcription start site region 141997
Tssr139272 16 89826123 to 89826146 23 + TSS region transcription start site region 139272
Tssr141998 16 89826411 to 89826418 7 - TSS region transcription start site region 141998
Tssr141999 16 89833143 to 89833154 11 - TSS region transcription start site region 141999
Tssr142000 16 89833164 to 89833177 13 - TSS region transcription start site region 142000
Tssr142001 16 89833195 to 89833207 12 - TSS region transcription start site region 142001
Tssr142002 16 89833212 to 89833215 3 - TSS region transcription start site region 142002
Tssr142003 16 89837209 to 89837217 8 - TSS region transcription start site region 142003
Tssr142004 16 89837874 to 89837883 9 - TSS region transcription start site region 142004