Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:88973803-89833806

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41515 16 88981537 to 88981785 248 - protein coding gene predicted gene, 41515
Tssr141981 16 88981828 to 88981831 3 - TSS region transcription start site region 141981
Gm49689 16 89009659 to 89010232 573 - pseudogene predicted gene, 49689
Krtap22-2 16 89010395 to 89010759 364 - protein coding gene keratin associated protein 22-2
Tssr141982 16 89010758 to 89010766 8 - TSS region transcription start site region 141982
Gm10229 16 89015284 to 89015846 562 + protein coding gene predicted gene 10229
Krtap6-1 16 89031699 to 89032292 593 + protein coding gene keratin associated protein 6-1
Gm10228 16 89040923 to 89041472 549 - protein coding gene predicted gene 10228
Krtap6-5 16 89047289 to 89047883 594 - protein coding gene keratin associated protein 6-5
Tssr141983 16 89047898 to 89047902 4 - TSS region transcription start site region 141983
1110025L11Rik 16 89063412 to 89064002 590 - protein coding gene RIKEN cDNA 1110025L11 gene
Gm41487 16 89069501 to 89160079 90578 - lncRNA gene predicted gene, 41487
Krtap6-3 16 89084015 to 89084534 519 + protein coding gene keratin associated protein 6-3
Tssr139250 16 89084021 to 89084025 4 + TSS region transcription start site region 139250
Tssr139251 16 89092095 to 89092105 10 + TSS region transcription start site region 139251
Gm38490 16 89092134 to 89092349 215 + protein coding gene predicted gene, 38490
Gm33726 16 89106497 to 89106661 164 - protein coding gene predicted gene, 33726
Gm33798 16 89122324 to 89122479 155 - protein coding gene predicted gene, 33798
Tssr141984 16 89122531 to 89122534 3 - TSS region transcription start site region 141984
Tssr139252 16 89129201 to 89129205 4 + TSS region transcription start site region 139252
Gm33888 16 89129257 to 89133106 3849 + protein coding gene predicted gene, 33888
Tssr139253 16 89132856 to 89132858 2 + TSS region transcription start site region 139253
Tssr139254 16 89140884 to 89140889 5 + TSS region transcription start site region 139254
Gm6358 16 89140944 to 89141123 179 + protein coding gene predicted gene 6358
Tssr139255 16 89151083 to 89151087 4 + TSS region transcription start site region 139255
Gm10061 16 89151139 to 89151303 164 + protein coding gene predicted gene 10061
Tssr139256 16 89157950 to 89157952 2 + TSS region transcription start site region 139256
Gm9789 16 89157952 to 89158348 396 + protein coding gene predicted gene 9789
Tssr139257 16 89169433 to 89169437 4 + TSS region transcription start site region 139257
Gm7735 16 89169490 to 89169648 158 + protein coding gene predicted gene 7735
Tssr139258 16 89174732 to 89174736 4 + TSS region transcription start site region 139258
1110057P08Rik 16 89174741 to 89175193 452 + protein coding gene RIKEN cDNA 1110057P08 gene
Tssr139259 16 89183259 to 89183263 4 + TSS region transcription start site region 139259
Gm34396 16 89183315 to 89183497 182 + protein coding gene predicted gene, 34396
Tssr139260 16 89205858 to 89205862 4 + TSS region transcription start site region 139260
Krtap20-2 16 89205861 to 89206394 533 + protein coding gene keratin associated protein 20-2
Tssr139261 16 89211475 to 89211481 6 + TSS region transcription start site region 139261
Gm34478 16 89211487 to 89211781 294 + protein coding gene predicted gene, 34478
Tssr139262 16 89215929 to 89215932 3 + TSS region transcription start site region 139262
Gm34566 16 89215952 to 89216160 208 + protein coding gene predicted gene, 34566
Gm34650 16 89222396 to 89222646 250 + protein coding gene predicted gene, 34650
Gm34733 16 89226811 to 89227103 292 + protein coding gene predicted gene, 34733
Tssr139263 16 89226826 to 89226831 5 + TSS region transcription start site region 139263
Gm34826 16 89230783 to 89231006 223 + protein coding gene predicted gene, 34826
Gm35004 16 89242633 to 89242808 175 + protein coding gene predicted gene, 35004
Gm35091 16 89247120 to 89247305 185 + protein coding gene predicted gene, 35091
Gm35174 16 89250970 to 89251267 297 + protein coding gene predicted gene, 35174
Tssr139264 16 89250997 to 89251003 6 + TSS region transcription start site region 139264
Gm35257 16 89260831 to 89261208 377 + protein coding gene predicted gene, 35257
Tssr139265 16 89274451 to 89274457 6 + TSS region transcription start site region 139265
Gm35342 16 89274509 to 89274667 158 + protein coding gene predicted gene, 35342
Gm41488 16 89276381 to 89278306 1925 - lncRNA gene predicted gene, 41488
Gm35427 16 89278331 to 89278788 457 + protein coding gene predicted gene, 35427
Tssr139266 16 89278408 to 89278410 2 + TSS region transcription start site region 139266
Tssr139267 16 89288327 to 89288334 7 + TSS region transcription start site region 139267
Gm33084 16 89288386 to 89288631 245 + protein coding gene predicted gene, 33084
Tssr139268 16 89306926 to 89306937 11 + TSS region transcription start site region 139268
D16Mit227 16 89345379 to 89345528 149 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-227
Krtap21-1 16 89403218 to 89403868 650 - protein coding gene keratin associated protein 21-1
Tssr141985 16 89403803 to 89403806 3 - TSS region transcription start site region 141985
Tssr139269 16 89404695 to 89404699 4 + TSS region transcription start site region 139269
Krtap6-2 16 89419326 to 89420111 785 - protein coding gene keratin associated protein 6-2
Tssr141986 16 89420127 to 89420134 7 - TSS region transcription start site region 141986
Gm23655 16 89451495 to 89451599 104 - snRNA gene predicted gene, 23655
Krtap8-1 16 89487379 to 89487952 573 - protein coding gene keratin associated protein 8-1
Tssr141987 16 89487945 to 89487957 12 - TSS region transcription start site region 141987
Tssr4950 16 89488235 to 89488242 7 + TSS region transcription start site region 4950
Krtap7-1 16 89507703 to 89508323 620 - protein coding gene keratin associated protein 7-1
Tssr141988 16 89507738 to 89507743 5 - TSS region transcription start site region 141988
Tssr141989 16 89508313 to 89508327 14 - TSS region transcription start site region 141989
Tssr139270 16 89511979 to 89511985 6 + TSS region transcription start site region 139270
Krtap11-1 16 89570176 to 89571183 1007 - protein coding gene keratin associated protein 11-1
Tssr141990 16 89571144 to 89571153 9 - TSS region transcription start site region 141990
Tssr141991 16 89571171 to 89571190 19 - TSS region transcription start site region 141991
Gm49696 16 89584535 to 89584998 463 + lincRNA gene predicted gene, 49696
Tssr139271 16 89585954 to 89585962 8 + TSS region transcription start site region 139271
Gm17844 16 89632842 to 89633415 573 - pseudogene predicted gene, 17844
Gm35500 16 89645420 to 89719145 73725 - lncRNA gene predicted gene, 35500
Tssr141992 16 89701440 to 89701445 5 - TSS region transcription start site region 141992
Tssr141993 16 89733179 to 89733184 5 - TSS region transcription start site region 141993
Cpgi8407 16 89772820 to 89773446 626 CpG island CpG island 8407
Cpgi8408 16 89773880 to 89774094 214 CpG island CpG island 8408
Tiam1 16 89787111 to 90143769 356658 - protein coding gene T cell lymphoma invasion and metastasis 1
Dp(16Tiam1-Kcnj6)6Yey 16 89787111 to 94997696 5210585 chromosomal duplication duplication, Chr 16, Y Eugene Yu 6
Del(16Tiam1-Kcnj6)7Yey 16 89787111 to 94997696 5210585 chromosomal deletion deletion, Chr 16, Y Eugene Yu 7
Cpgi8409 16 89817954 to 89818164 210 CpG island CpG island 8409
Tssr141994 16 89818191 to 89818202 11 - TSS region transcription start site region 141994
Tssr141995 16 89818315 to 89818327 12 - TSS region transcription start site region 141995
Tssr141996 16 89818338 to 89818356 18 - TSS region transcription start site region 141996
Tssr141997 16 89818358 to 89818397 39 - TSS region transcription start site region 141997
Tssr139272 16 89826123 to 89826146 23 + TSS region transcription start site region 139272
Tssr141998 16 89826411 to 89826418 7 - TSS region transcription start site region 141998
Tssr141999 16 89833143 to 89833154 11 - TSS region transcription start site region 141999
Tssr142000 16 89833164 to 89833177 13 - TSS region transcription start site region 142000
Tssr142001 16 89833195 to 89833207 12 - TSS region transcription start site region 142001
Tssr142002 16 89833212 to 89833215 3 - TSS region transcription start site region 142002