Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:88745968-89046449

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8406 16 88750235 to 88750481 246 CpG island CpG island 8406
Krtap13 16 88750744 to 88751628 884 - protein coding gene keratin associated protein 13
Tssr4949 16 88758844 to 88758851 7 + TSS region transcription start site region 4949
2310034C09Rik 16 88758847 to 88759789 942 + protein coding gene RIKEN cDNA 2310034C09 gene
2310057N15Rik 16 88773181 to 88774206 1025 - protein coding gene RIKEN cDNA 2310057N15 gene
Tssr141969 16 88774201 to 88774206 5 - TSS region transcription start site region 141969
Tssr139245 16 88777829 to 88777835 6 + TSS region transcription start site region 139245
Gm5965 16 88777896 to 88778528 632 + protein coding gene predicted gene 5965
Gm20741 16 88811440 to 88812220 780 - pseudogene predicted gene, 20741
Tssr141970 16 88812232 to 88812236 4 - TSS region transcription start site region 141970
4930553J12Rik 16 88820044 to 88820892 848 + lincRNA gene RIKEN cDNA 4930553J12 gene
Tssr139246 16 88820047 to 88820050 3 + TSS region transcription start site region 139246
Krtap14 16 88825291 to 88826145 854 - protein coding gene keratin associated protein 14
Tssr141971 16 88826139 to 88826151 12 - TSS region transcription start site region 141971
Tssr139247 16 88828985 to 88829000 15 + TSS region transcription start site region 139247
Krtap15 16 88829009 to 88829844 835 + protein coding gene keratin associated protein 15
Tssr139248 16 88829110 to 88829135 25 + TSS region transcription start site region 139248
Krtap19-1 16 88868918 to 88869410 492 - protein coding gene keratin associated protein 19-1
Tssr141972 16 88869445 to 88869449 4 - TSS region transcription start site region 141972
Krtap19-2 16 88873665 to 88874269 604 - protein coding gene keratin associated protein 19-2
Tssr141973 16 88874308 to 88874313 5 - TSS region transcription start site region 141973
Krtap19-3 16 88877513 to 88878038 525 - protein coding gene keratin associated protein 19-3
Tssr141974 16 88878031 to 88878040 9 - TSS region transcription start site region 141974
Krtap19-4 16 88884786 to 88885089 303 - protein coding gene keratin associated protein 19-4
Tssr141975 16 88885110 to 88885114 4 - TSS region transcription start site region 141975
Krtap19-5 16 88895968 to 88896449 481 - protein coding gene keratin associated protein 19-5
Tssr141976 16 88896474 to 88896489 15 - TSS region transcription start site region 141976
Krtap19-9a 16 88924054 to 88924219 165 - protein coding gene keratin associated protein 19-9A
Tssr141977 16 88924266 to 88924271 5 - TSS region transcription start site region 141977
Tssr139249 16 88924789 to 88924795 6 + TSS region transcription start site region 139249
D16Mit225 16 88930884 to 88931082 198 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-225
Krtap19-9b 16 88931804 to 88932264 460 - protein coding gene keratin associated protein 19-9B
Tssr141978 16 88932261 to 88932267 6 - TSS region transcription start site region 141978
Krtap16-3 16 88962304 to 88962873 569 - protein coding gene keratin associated protein 16-3
Tssr141979 16 88962865 to 88962877 12 - TSS region transcription start site region 141979
Tssr141980 16 88962935 to 88962960 25 - TSS region transcription start site region 141980
Gm41515 16 88981537 to 88981785 248 - protein coding gene predicted gene, 41515
Tssr141981 16 88981828 to 88981831 3 - TSS region transcription start site region 141981
Gm49689 16 89009659 to 89010232 573 - pseudogene predicted gene, 49689
Krtap22-2 16 89010395 to 89010759 364 - protein coding gene keratin associated protein 22-2
Tssr141982 16 89010758 to 89010766 8 - TSS region transcription start site region 141982
Gm10229 16 89015284 to 89015846 562 + protein coding gene predicted gene 10229
Krtap6-1 16 89031699 to 89032292 593 + protein coding gene keratin associated protein 6-1
Gm10228 16 89040923 to 89041472 549 - protein coding gene predicted gene 10228