Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:87812232-89812236

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr139241 16 87823756 to 87823761 5 + TSS region transcription start site region 139241
2810407A14Rik 16 87823950 to 87872183 48233 + lincRNA gene RIKEN cDNA 2810407A14 gene
Grik1 16 87895900 to 88290265 394365 - protein coding gene glutamate receptor, ionotropic, kainate 1
Tssr141949 16 87902275 to 87902280 5 - TSS region transcription start site region 141949
4930590A17Rik 16 87933354 to 88012206 78852 + lncRNA gene RIKEN cDNA 4930590A17 gene
D16Ium72 16 87965542 to 87965723 181 DNA segment DNA segment, Chr 16, Indiana University Medical 72
Gm33207 16 88012366 to 88016443 4077 + lncRNA gene predicted gene, 33207
Gm46553 16 88134754 to 88142516 7762 - lncRNA gene predicted gene, 46553
Tssr141950 16 88167438 to 88167439 1 - TSS region transcription start site region 141950
Gm41486 16 88224657 to 88226200 1543 + lncRNA gene predicted gene, 41486
Tssr141951 16 88225432 to 88225446 14 - TSS region transcription start site region 141951
Tssr139242 16 88225518 to 88225544 26 + TSS region transcription start site region 139242
Cpgi8404 16 88289377 to 88290583 1206 CpG island CpG island 8404
Tssr141952 16 88290186 to 88290197 11 - TSS region transcription start site region 141952
Tssr141953 16 88290199 to 88290226 27 - TSS region transcription start site region 141953
Gm33255 16 88367902 to 88381696 13794 - lincRNA gene predicted gene, 33255
4930420G21Rik 16 88376609 to 88443450 66841 + lincRNA gene RIKEN cDNA 4930420G21 gene
Gm46546 16 88459945 to 88460193 248 + pseudogene predicted gene, 46546
Cldn17 16 88505807 to 88506978 1171 - protein coding gene claudin 17
Tssr141954 16 88506956 to 88506965 9 - TSS region transcription start site region 141954
Tssr141955 16 88506971 to 88506994 23 - TSS region transcription start site region 141955
Cldn8 16 88560828 to 88563183 2355 - protein coding gene claudin 8
Cpgi8405 16 88562388 to 88562732 344 CpG island CpG island 8405
Tssr141956 16 88563019 to 88563026 7 - TSS region transcription start site region 141956
Tssr141957 16 88563058 to 88563070 12 - TSS region transcription start site region 141957
Tssr141958 16 88563107 to 88563118 11 - TSS region transcription start site region 141958
Tssr141959 16 88563130 to 88563141 11 - TSS region transcription start site region 141959
Tssr141960 16 88563144 to 88563147 3 - TSS region transcription start site region 141960
Tssr141961 16 88563149 to 88563164 15 - TSS region transcription start site region 141961
Tssr141962 16 88563166 to 88563200 34 - TSS region transcription start site region 141962
Tssr141963 16 88563201 to 88563214 13 - TSS region transcription start site region 141963
D16Ium45 16 88581459 to 88581618 159 DNA segment DNA segment, Chr 16, Indiana University Medical 45
Gm33372 16 88592288 to 88596750 4462 - lncRNA gene predicted gene, 33372
Gm49688 16 88608670 to 88638214 29544 + lincRNA gene predicted gene, 49688
Tssr139243 16 88608716 to 88608724 8 + TSS region transcription start site region 139243
Krtap24-1 16 88610709 to 88612279 1570 - protein coding gene keratin associated protein 24-1
Tssr141964 16 88612273 to 88612279 6 - TSS region transcription start site region 141964
Gm23587 16 88614527 to 88614610 83 - snRNA gene predicted gene, 23587
2310079G19Rik 16 88626788 to 88627666 878 - protein coding gene RIKEN cDNA 2310079G19 gene
Tssr141965 16 88627658 to 88627667 9 - TSS region transcription start site region 141965
Krtap26-1 16 88646824 to 88647796 972 - protein coding gene keratin associated protein 26-1
Tssr141966 16 88647786 to 88647799 13 - TSS region transcription start site region 141966
Krtap27-1 16 88671046 to 88671654 608 - protein coding gene keratin associated protein 27-1
Tssr141967 16 88671721 to 88671726 5 - TSS region transcription start site region 141967
Gm7667 16 88682104 to 88682728 624 - pseudogene predicted gene 7667
2310061N02Rik 16 88707171 to 88707962 791 - protein coding gene RIKEN cDNA 2310061N02 gene
Tssr141968 16 88707961 to 88707965 4 - TSS region transcription start site region 141968
Tssr139244 16 88728828 to 88728845 17 + TSS region transcription start site region 139244
Krtap13-1 16 88728862 to 88729611 749 + protein coding gene keratin associated protein 13-1
Cpgi8406 16 88750235 to 88750481 246 CpG island CpG island 8406
Krtap13 16 88750744 to 88751628 884 - protein coding gene keratin associated protein 13
Tssr4949 16 88758844 to 88758851 7 + TSS region transcription start site region 4949
2310034C09Rik 16 88758847 to 88759789 942 + protein coding gene RIKEN cDNA 2310034C09 gene
2310057N15Rik 16 88773181 to 88774206 1025 - protein coding gene RIKEN cDNA 2310057N15 gene
Tssr141969 16 88774201 to 88774206 5 - TSS region transcription start site region 141969
Tssr139245 16 88777829 to 88777835 6 + TSS region transcription start site region 139245
Gm5965 16 88777896 to 88778528 632 + protein coding gene predicted gene 5965
Gm20741 16 88811440 to 88812220 780 - pseudogene predicted gene, 20741
Tssr141970 16 88812232 to 88812236 4 - TSS region transcription start site region 141970
4930553J12Rik 16 88820044 to 88820892 848 + lincRNA gene RIKEN cDNA 4930553J12 gene
Tssr139246 16 88820047 to 88820050 3 + TSS region transcription start site region 139246
Krtap14 16 88825291 to 88826145 854 - protein coding gene keratin associated protein 14
Tssr141971 16 88826139 to 88826151 12 - TSS region transcription start site region 141971
Tssr139247 16 88828985 to 88829000 15 + TSS region transcription start site region 139247
Krtap15 16 88829009 to 88829844 835 + protein coding gene keratin associated protein 15
Tssr139248 16 88829110 to 88829135 25 + TSS region transcription start site region 139248
Krtap19-1 16 88868918 to 88869410 492 - protein coding gene keratin associated protein 19-1
Tssr141972 16 88869445 to 88869449 4 - TSS region transcription start site region 141972
Krtap19-2 16 88873665 to 88874269 604 - protein coding gene keratin associated protein 19-2
Tssr141973 16 88874308 to 88874313 5 - TSS region transcription start site region 141973
Krtap19-3 16 88877513 to 88878038 525 - protein coding gene keratin associated protein 19-3
Tssr141974 16 88878031 to 88878040 9 - TSS region transcription start site region 141974
Krtap19-4 16 88884786 to 88885089 303 - protein coding gene keratin associated protein 19-4
Tssr141975 16 88885110 to 88885114 4 - TSS region transcription start site region 141975
Krtap19-5 16 88895968 to 88896449 481 - protein coding gene keratin associated protein 19-5
Tssr141976 16 88896474 to 88896489 15 - TSS region transcription start site region 141976
Krtap19-9a 16 88924054 to 88924219 165 - protein coding gene keratin associated protein 19-9A
Tssr141977 16 88924266 to 88924271 5 - TSS region transcription start site region 141977
Tssr139249 16 88924789 to 88924795 6 + TSS region transcription start site region 139249
D16Mit225 16 88930884 to 88931082 198 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-225
Krtap19-9b 16 88931804 to 88932264 460 - protein coding gene keratin associated protein 19-9B
Tssr141978 16 88932261 to 88932267 6 - TSS region transcription start site region 141978
Krtap16-3 16 88962304 to 88962873 569 - protein coding gene keratin associated protein 16-3
Tssr141979 16 88962865 to 88962877 12 - TSS region transcription start site region 141979
Tssr141980 16 88962935 to 88962960 25 - TSS region transcription start site region 141980
Gm41515 16 88981537 to 88981785 248 - protein coding gene predicted gene, 41515
Tssr141981 16 88981828 to 88981831 3 - TSS region transcription start site region 141981
Gm49689 16 89009659 to 89010232 573 - pseudogene predicted gene, 49689
Krtap22-2 16 89010395 to 89010759 364 - protein coding gene keratin associated protein 22-2
Tssr141982 16 89010758 to 89010766 8 - TSS region transcription start site region 141982
Gm10229 16 89015284 to 89015846 562 + protein coding gene predicted gene 10229
Krtap6-1 16 89031699 to 89032292 593 + protein coding gene keratin associated protein 6-1
Gm10228 16 89040923 to 89041472 549 - protein coding gene predicted gene 10228
Krtap6-5 16 89047289 to 89047883 594 - protein coding gene keratin associated protein 6-5
Tssr141983 16 89047898 to 89047902 4 - TSS region transcription start site region 141983
1110025L11Rik 16 89063412 to 89064002 590 - protein coding gene RIKEN cDNA 1110025L11 gene
Gm41487 16 89069501 to 89160079 90578 - lncRNA gene predicted gene, 41487
Krtap6-3 16 89084015 to 89084534 519 + protein coding gene keratin associated protein 6-3
Tssr139250 16 89084021 to 89084025 4 + TSS region transcription start site region 139250
Tssr139251 16 89092095 to 89092105 10 + TSS region transcription start site region 139251
Gm38490 16 89092134 to 89092349 215 + protein coding gene predicted gene, 38490
Gm33726 16 89106497 to 89106661 164 - protein coding gene predicted gene, 33726
Gm33798 16 89122324 to 89122479 155 - protein coding gene predicted gene, 33798
Tssr141984 16 89122531 to 89122534 3 - TSS region transcription start site region 141984
Tssr139252 16 89129201 to 89129205 4 + TSS region transcription start site region 139252
Gm33888 16 89129257 to 89133106 3849 + protein coding gene predicted gene, 33888
Tssr139253 16 89132856 to 89132858 2 + TSS region transcription start site region 139253
Tssr139254 16 89140884 to 89140889 5 + TSS region transcription start site region 139254
Gm6358 16 89140944 to 89141123 179 + protein coding gene predicted gene 6358
Tssr139255 16 89151083 to 89151087 4 + TSS region transcription start site region 139255
Gm10061 16 89151139 to 89151303 164 + protein coding gene predicted gene 10061
Tssr139256 16 89157950 to 89157952 2 + TSS region transcription start site region 139256
Gm9789 16 89157952 to 89158348 396 + protein coding gene predicted gene 9789
Tssr139257 16 89169433 to 89169437 4 + TSS region transcription start site region 139257
Gm7735 16 89169490 to 89169648 158 + protein coding gene predicted gene 7735
Tssr139258 16 89174732 to 89174736 4 + TSS region transcription start site region 139258
1110057P08Rik 16 89174741 to 89175193 452 + protein coding gene RIKEN cDNA 1110057P08 gene
Tssr139259 16 89183259 to 89183263 4 + TSS region transcription start site region 139259
Gm34396 16 89183315 to 89183497 182 + protein coding gene predicted gene, 34396
Tssr139260 16 89205858 to 89205862 4 + TSS region transcription start site region 139260
Krtap20-2 16 89205861 to 89206394 533 + protein coding gene keratin associated protein 20-2
Tssr139261 16 89211475 to 89211481 6 + TSS region transcription start site region 139261
Gm34478 16 89211487 to 89211781 294 + protein coding gene predicted gene, 34478
Tssr139262 16 89215929 to 89215932 3 + TSS region transcription start site region 139262
Gm34566 16 89215952 to 89216160 208 + protein coding gene predicted gene, 34566
Gm34650 16 89222396 to 89222646 250 + protein coding gene predicted gene, 34650
Gm34733 16 89226811 to 89227103 292 + protein coding gene predicted gene, 34733
Tssr139263 16 89226826 to 89226831 5 + TSS region transcription start site region 139263
Gm34826 16 89230783 to 89231006 223 + protein coding gene predicted gene, 34826
Gm35004 16 89242633 to 89242808 175 + protein coding gene predicted gene, 35004
Gm35091 16 89247120 to 89247305 185 + protein coding gene predicted gene, 35091
Gm35174 16 89250970 to 89251267 297 + protein coding gene predicted gene, 35174
Tssr139264 16 89250997 to 89251003 6 + TSS region transcription start site region 139264
Gm35257 16 89260831 to 89261208 377 + protein coding gene predicted gene, 35257
Tssr139265 16 89274451 to 89274457 6 + TSS region transcription start site region 139265
Gm35342 16 89274509 to 89274667 158 + protein coding gene predicted gene, 35342
Gm41488 16 89276381 to 89278306 1925 - lncRNA gene predicted gene, 41488
Gm35427 16 89278331 to 89278788 457 + protein coding gene predicted gene, 35427
Tssr139266 16 89278408 to 89278410 2 + TSS region transcription start site region 139266
Tssr139267 16 89288327 to 89288334 7 + TSS region transcription start site region 139267
Gm33084 16 89288386 to 89288631 245 + protein coding gene predicted gene, 33084
Tssr139268 16 89306926 to 89306937 11 + TSS region transcription start site region 139268
D16Mit227 16 89345379 to 89345528 149 DNA segment DNA Segment, Chr 16, Massachusetts Institute of Technology-227
Krtap21-1 16 89403218 to 89403868 650 - protein coding gene keratin associated protein 21-1
Tssr141985 16 89403803 to 89403806 3 - TSS region transcription start site region 141985
Tssr139269 16 89404695 to 89404699 4 + TSS region transcription start site region 139269
Krtap6-2 16 89419326 to 89420111 785 - protein coding gene keratin associated protein 6-2
Tssr141986 16 89420127 to 89420134 7 - TSS region transcription start site region 141986
Gm23655 16 89451495 to 89451599 104 - snRNA gene predicted gene, 23655
Krtap8-1 16 89487379 to 89487952 573 - protein coding gene keratin associated protein 8-1
Tssr141987 16 89487945 to 89487957 12 - TSS region transcription start site region 141987
Tssr4950 16 89488235 to 89488242 7 + TSS region transcription start site region 4950
Krtap7-1 16 89507703 to 89508323 620 - protein coding gene keratin associated protein 7-1
Tssr141988 16 89507738 to 89507743 5 - TSS region transcription start site region 141988
Tssr141989 16 89508313 to 89508327 14 - TSS region transcription start site region 141989
Tssr139270 16 89511979 to 89511985 6 + TSS region transcription start site region 139270
Krtap11-1 16 89570176 to 89571183 1007 - protein coding gene keratin associated protein 11-1
Tssr141990 16 89571144 to 89571153 9 - TSS region transcription start site region 141990
Tssr141991 16 89571171 to 89571190 19 - TSS region transcription start site region 141991
Gm49696 16 89584535 to 89584998 463 + lincRNA gene predicted gene, 49696
Tssr139271 16 89585954 to 89585962 8 + TSS region transcription start site region 139271
Gm17844 16 89632842 to 89633415 573 - pseudogene predicted gene, 17844
Gm35500 16 89645420 to 89719145 73725 - lncRNA gene predicted gene, 35500
Tssr141992 16 89701440 to 89701445 5 - TSS region transcription start site region 141992
Tssr141993 16 89733179 to 89733184 5 - TSS region transcription start site region 141993
Cpgi8407 16 89772820 to 89773446 626 CpG island CpG island 8407
Cpgi8408 16 89773880 to 89774094 214 CpG island CpG island 8408
Del(16Tiam1-Kcnj6)7Yey 16 89787111 to 94997696 5210585 chromosomal deletion deletion, Chr 16, Y Eugene Yu 7
Tiam1 16 89787111 to 90143769 356658 - protein coding gene T cell lymphoma invasion and metastasis 1
Dp(16Tiam1-Kcnj6)6Yey 16 89787111 to 94997696 5210585 chromosomal duplication duplication, Chr 16, Y Eugene Yu 6