Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:87739377-88840583

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm32925 16 87737943 to 87799641 61698 + lncRNA gene predicted gene, 32925
D16Mit191 16 87755787 to 87755907 120 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 191
Gm23994 16 87761556 to 87761643 87 - snoRNA gene predicted gene, 23994
Tssr139240 16 87787540 to 87787551 11 + TSS region transcription start site region 139240
Tssr139241 16 87823756 to 87823761 5 + TSS region transcription start site region 139241
2810407A14Rik 16 87823950 to 87872183 48233 + lincRNA gene RIKEN cDNA 2810407A14 gene
Grik1 16 87895900 to 88290265 394365 - protein coding gene glutamate receptor, ionotropic, kainate 1
Tssr141949 16 87902275 to 87902280 5 - TSS region transcription start site region 141949
4930590A17Rik 16 87933354 to 88012206 78852 + lncRNA gene RIKEN cDNA 4930590A17 gene
D16Ium72 16 87965542 to 87965723 181 DNA segment DNA segment, Chr 16, Indiana University Medical 72
Gm33207 16 88012366 to 88016443 4077 + lncRNA gene predicted gene, 33207
Gm46553 16 88134754 to 88142516 7762 - lncRNA gene predicted gene, 46553
Tssr141950 16 88167438 to 88167439 1 - TSS region transcription start site region 141950
Gm41486 16 88224657 to 88226200 1543 + lncRNA gene predicted gene, 41486
Tssr141951 16 88225432 to 88225446 14 - TSS region transcription start site region 141951
Tssr139242 16 88225518 to 88225544 26 + TSS region transcription start site region 139242
Cpgi8404 16 88289377 to 88290583 1206 CpG island CpG island 8404
Tssr141952 16 88290186 to 88290197 11 - TSS region transcription start site region 141952
Tssr141953 16 88290199 to 88290226 27 - TSS region transcription start site region 141953
Gm33255 16 88367902 to 88381696 13794 - lincRNA gene predicted gene, 33255
4930420G21Rik 16 88376609 to 88443450 66841 + lincRNA gene RIKEN cDNA 4930420G21 gene
Gm46546 16 88459945 to 88460193 248 + pseudogene predicted gene, 46546
Cldn17 16 88505807 to 88506978 1171 - protein coding gene claudin 17
Tssr141954 16 88506956 to 88506965 9 - TSS region transcription start site region 141954
Tssr141955 16 88506971 to 88506994 23 - TSS region transcription start site region 141955
Cldn8 16 88560828 to 88563183 2355 - protein coding gene claudin 8
Cpgi8405 16 88562388 to 88562732 344 CpG island CpG island 8405
Tssr141956 16 88563019 to 88563026 7 - TSS region transcription start site region 141956
Tssr141957 16 88563058 to 88563070 12 - TSS region transcription start site region 141957
Tssr141958 16 88563107 to 88563118 11 - TSS region transcription start site region 141958
Tssr141959 16 88563130 to 88563141 11 - TSS region transcription start site region 141959
Tssr141960 16 88563144 to 88563147 3 - TSS region transcription start site region 141960
Tssr141961 16 88563149 to 88563164 15 - TSS region transcription start site region 141961
Tssr141962 16 88563166 to 88563200 34 - TSS region transcription start site region 141962
Tssr141963 16 88563201 to 88563214 13 - TSS region transcription start site region 141963
D16Ium45 16 88581459 to 88581618 159 DNA segment DNA segment, Chr 16, Indiana University Medical 45
Gm33372 16 88592288 to 88596750 4462 - lncRNA gene predicted gene, 33372
Gm49688 16 88608670 to 88638214 29544 + lincRNA gene predicted gene, 49688
Tssr139243 16 88608716 to 88608724 8 + TSS region transcription start site region 139243
Krtap24-1 16 88610709 to 88612279 1570 - protein coding gene keratin associated protein 24-1
Tssr141964 16 88612273 to 88612279 6 - TSS region transcription start site region 141964
Gm23587 16 88614527 to 88614610 83 - snRNA gene predicted gene, 23587
2310079G19Rik 16 88626788 to 88627666 878 - protein coding gene RIKEN cDNA 2310079G19 gene
Tssr141965 16 88627658 to 88627667 9 - TSS region transcription start site region 141965
Krtap26-1 16 88646824 to 88647796 972 - protein coding gene keratin associated protein 26-1
Tssr141966 16 88647786 to 88647799 13 - TSS region transcription start site region 141966
Krtap27-1 16 88671046 to 88671654 608 - protein coding gene keratin associated protein 27-1
Tssr141967 16 88671721 to 88671726 5 - TSS region transcription start site region 141967
Gm7667 16 88682104 to 88682728 624 - pseudogene predicted gene 7667
2310061N02Rik 16 88707171 to 88707962 791 - protein coding gene RIKEN cDNA 2310061N02 gene
Tssr141968 16 88707961 to 88707965 4 - TSS region transcription start site region 141968
Tssr139244 16 88728828 to 88728845 17 + TSS region transcription start site region 139244
Krtap13-1 16 88728862 to 88729611 749 + protein coding gene keratin associated protein 13-1
Cpgi8406 16 88750235 to 88750481 246 CpG island CpG island 8406
Krtap13 16 88750744 to 88751628 884 - protein coding gene keratin associated protein 13
Tssr4949 16 88758844 to 88758851 7 + TSS region transcription start site region 4949
2310034C09Rik 16 88758847 to 88759789 942 + protein coding gene RIKEN cDNA 2310034C09 gene
2310057N15Rik 16 88773181 to 88774206 1025 - protein coding gene RIKEN cDNA 2310057N15 gene
Tssr141969 16 88774201 to 88774206 5 - TSS region transcription start site region 141969
Tssr139245 16 88777829 to 88777835 6 + TSS region transcription start site region 139245
Gm5965 16 88777896 to 88778528 632 + protein coding gene predicted gene 5965
Gm20741 16 88811440 to 88812220 780 - pseudogene predicted gene, 20741
Tssr141970 16 88812232 to 88812236 4 - TSS region transcription start site region 141970
4930553J12Rik 16 88820044 to 88820892 848 + lincRNA gene RIKEN cDNA 4930553J12 gene
Tssr139246 16 88820047 to 88820050 3 + TSS region transcription start site region 139246
Krtap14 16 88825291 to 88826145 854 - protein coding gene keratin associated protein 14
Tssr141971 16 88826139 to 88826151 12 - TSS region transcription start site region 141971
Tssr139247 16 88828985 to 88829000 15 + TSS region transcription start site region 139247
Krtap15 16 88829009 to 88829844 835 + protein coding gene keratin associated protein 15
Tssr139248 16 88829110 to 88829135 25 + TSS region transcription start site region 139248